Wall clock time and date at job start Wed Apr 1 2020 03:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30837 * 125.90206 * 2 1 4 4 N 1.40082 * 108.20709 * 180.26119 * 3 2 1 5 5 H 0.96994 * 126.04282 * 179.70073 * 4 3 2 6 6 C 1.34945 * 107.92293 * 359.71706 * 4 3 2 7 7 C 1.50705 * 126.12775 * 180.02562 * 6 4 3 8 8 C 1.35316 * 107.74853 * 359.97438 * 6 4 3 9 9 C 1.50703 * 126.04236 * 179.97438 * 8 6 4 10 10 H 1.08999 * 109.46692 * 4.64865 * 9 8 6 11 11 C 1.53000 * 109.47214 * 244.64963 * 9 8 6 12 12 C 1.50700 * 109.46816 * 124.64959 * 9 8 6 13 13 O 1.21274 * 120.00335 * 0.02562 * 12 9 8 14 14 N 1.34779 * 119.99486 * 180.02562 * 12 9 8 15 15 C 1.46506 * 119.99576 * 179.97438 * 14 12 9 16 16 C 1.53572 * 112.24474 * 300.35509 * 15 14 12 17 17 C 1.54228 * 106.67600 * 238.84122 * 16 15 14 18 18 C 1.54761 * 104.15326 * 335.04881 * 17 16 15 19 19 C 1.54778 * 103.21525 * 37.81002 * 18 17 16 20 20 H 1.09009 * 111.86471 * 85.85347 * 19 18 17 21 21 N 1.46972 * 108.69034 * 209.80474 * 19 18 17 22 22 C 1.36942 * 125.57617 * 294.14115 * 21 19 18 23 23 H 1.07998 * 120.00186 * 0.02562 * 22 21 19 24 24 C 1.38816 * 119.99483 * 180.02562 * 22 21 19 25 25 N 1.31620 * 120.00244 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99430 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47685 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47272 * 120.00333 * 26 24 22 29 29 H 1.48510 * 109.47057 * 239.99705 * 26 24 22 30 30 C 1.47372 * 108.84223 * 114.40911 * 21 19 18 31 31 C 1.54917 * 112.77627 * 64.06773 * 15 14 12 32 32 H 1.09005 * 109.46968 * 275.81579 * 1 2 3 33 33 H 1.09008 * 109.47058 * 35.80667 * 1 2 3 34 34 H 1.08997 * 109.47536 * 155.81484 * 1 2 3 35 35 H 1.08995 * 109.47304 * 269.97551 * 7 6 4 36 36 H 1.09002 * 109.47015 * 29.97836 * 7 6 4 37 37 H 1.09000 * 109.47083 * 149.97532 * 7 6 4 38 38 H 1.09003 * 109.46998 * 174.36860 * 11 9 8 39 39 H 1.08997 * 109.47376 * 294.36862 * 11 9 8 40 40 H 1.09000 * 109.47291 * 54.36814 * 11 9 8 41 41 H 0.97000 * 120.00034 * 0.02562 * 14 12 9 42 42 H 1.08999 * 110.02310 * 119.53900 * 16 15 14 43 43 H 1.09006 * 110.05813 * 358.16526 * 16 15 14 44 44 H 1.09000 * 110.49179 * 216.38479 * 17 16 15 45 45 H 1.09000 * 110.49199 * 93.71578 * 17 16 15 46 46 H 1.08999 * 110.67078 * 279.38087 * 18 17 16 47 47 H 1.08997 * 110.80687 * 156.30777 * 18 17 16 48 48 H 0.96998 * 119.99320 * 180.02562 * 25 24 22 49 49 H 1.09002 * 110.36677 * 93.87168 * 30 21 19 50 50 H 1.09002 * 110.36720 * 216.19908 * 30 21 19 51 51 H 1.08999 * 110.97095 * 204.56939 * 31 15 14 52 52 H 1.09004 * 110.96985 * 328.29255 * 31 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 -0.0061 5 1 4.3908 1.2077 -0.0115 6 6 3.6142 -0.7154 -0.0034 7 6 4.8349 -1.5991 -0.0074 8 6 2.3271 -1.1330 0.0048 9 6 1.8598 -2.5658 0.0098 10 1 2.7214 -3.2286 0.0891 11 6 1.1069 -2.8612 -1.2890 12 6 0.9428 -2.7909 1.1843 13 8 0.6929 -1.8778 1.9423 14 7 0.4004 -4.0070 1.3922 15 6 -0.4907 -4.2261 2.5344 16 6 0.2010 -3.9380 3.8749 17 6 0.1352 -5.2418 4.6961 18 6 -1.0917 -5.9897 4.1211 19 6 -1.0134 -5.6850 2.6056 20 1 -0.3663 -6.3894 2.0828 21 7 -2.3760 -5.6827 2.0547 22 6 -3.2043 -6.7702 1.9733 23 1 -2.8697 -7.7320 2.3328 24 6 -4.4741 -6.6361 1.4287 25 7 -4.8818 -5.4640 0.9901 26 14 -5.6042 -8.1194 1.3183 27 1 -4.9138 -9.3104 1.8749 28 1 -6.8428 -7.8569 2.0944 29 1 -5.9545 -8.3701 -0.1030 30 6 -2.7026 -4.3200 1.5985 31 6 -1.7936 -3.3926 2.4470 32 1 -0.3633 0.1041 1.0224 33 1 -0.3633 0.8335 -0.6013 34 1 -0.3634 -0.9374 -0.4210 35 1 5.1241 -1.8146 -1.0359 36 1 5.6537 -1.0900 0.5012 37 1 4.6100 -2.5318 0.5098 38 1 0.8561 -3.9212 -1.3305 39 1 0.1919 -2.2698 -1.3212 40 1 1.7364 -2.6032 -2.1407 41 1 0.6005 -4.7374 0.7861 42 1 -0.3221 -3.1392 4.4007 43 1 1.2402 -3.6553 3.7063 44 1 -0.0138 -5.0201 5.7529 45 1 1.0420 -5.8294 4.5525 46 1 -2.0155 -5.5965 4.5453 47 1 -1.0119 -7.0614 4.3027 48 1 -5.7692 -5.3704 0.6099 49 1 -2.4762 -4.2106 0.5378 50 1 -3.7528 -4.0979 1.7880 51 1 -2.2168 -3.2252 3.4375 52 1 -1.6179 -2.4464 1.9352 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992341498.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:38 Heat of formation + Delta-G solvation = 55.545760 kcal Electronic energy + Delta-G solvation = -32607.295768 eV Core-core repulsion = 28608.576295 eV Total energy + Delta-G solvation = -3998.719473 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.51531 -40.03163 -38.10902 -34.30647 -34.16404 -33.45852 -33.14373 -31.40292 -30.40417 -29.51078 -27.96264 -26.85534 -26.68256 -25.99545 -24.13213 -23.78616 -21.33633 -20.15985 -19.97449 -19.87533 -18.85065 -18.67926 -17.44184 -16.98191 -16.29965 -15.73026 -15.28816 -14.93686 -14.83870 -14.28848 -14.23258 -13.77638 -13.62353 -13.46640 -13.36005 -13.13168 -12.99363 -12.82709 -12.53772 -12.39505 -12.22052 -12.18767 -11.97636 -11.72997 -11.71669 -11.50338 -11.28400 -11.10439 -10.95774 -10.83491 -10.62403 -10.49064 -10.31726 -10.09390 -9.99348 -9.90621 -9.65826 -9.57757 -9.18394 -9.13777 -8.64289 -8.43108 -8.36202 -6.82858 -5.62925 -3.06003 1.82898 2.73708 2.83763 3.03896 3.39509 3.45207 3.47685 3.62722 4.48653 4.50728 4.65274 4.79238 4.86581 4.98958 5.09747 5.18051 5.20916 5.26770 5.34275 5.36507 5.40951 5.54087 5.59074 5.69707 5.72015 5.81770 5.87760 5.91232 5.92734 6.05397 6.07319 6.07983 6.12647 6.15386 6.20057 6.32045 6.36360 6.41178 6.46916 6.59618 6.64661 6.75279 6.83914 6.84505 7.04309 7.21795 7.26823 7.58095 7.67147 7.74633 7.89230 7.97846 8.39469 8.67751 9.23512 9.84537 10.48824 11.39237 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016448 B = 0.003124 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.971312 B = 8959.622244 C = 9630.925135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.120 3.880 3 N -0.305 5.305 4 N -0.482 5.482 5 H 0.434 0.566 6 C 0.086 3.914 7 C -0.093 4.093 8 C -0.210 4.210 9 C -0.031 4.031 10 H 0.095 0.905 11 C -0.144 4.144 12 C 0.516 3.484 13 O -0.526 6.526 14 N -0.706 5.706 15 C 0.164 3.836 16 C -0.109 4.109 17 C -0.125 4.125 18 C -0.130 4.130 19 C 0.161 3.839 20 H 0.045 0.955 21 N -0.596 5.596 22 C -0.219 4.219 23 H 0.077 0.923 24 C -0.011 4.011 25 N -0.919 5.919 26 Si 0.911 3.089 27 H -0.281 1.281 28 H -0.291 1.291 29 H -0.292 1.292 30 C 0.153 3.847 31 C -0.140 4.140 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.397 0.603 42 H 0.068 0.932 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.056 0.944 46 H 0.073 0.927 47 H 0.056 0.944 48 H 0.251 0.749 49 H 0.009 0.991 50 H 0.107 0.893 51 H 0.065 0.935 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.703 6.347 -2.245 19.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.046 4.046 3 N -0.128 5.128 4 N -0.189 5.189 5 H 0.278 0.722 6 C -0.042 4.042 7 C -0.151 4.151 8 C -0.221 4.221 9 C -0.054 4.054 10 H 0.113 0.887 11 C -0.201 4.201 12 C 0.301 3.699 13 O -0.401 6.401 14 N -0.357 5.357 15 C 0.078 3.922 16 C -0.148 4.148 17 C -0.163 4.163 18 C -0.170 4.170 19 C 0.053 3.947 20 H 0.063 0.937 21 N -0.320 5.320 22 C -0.347 4.347 23 H 0.094 0.906 24 C -0.206 4.206 25 N -0.568 5.568 26 Si 0.742 3.258 27 H -0.206 1.206 28 H -0.218 1.218 29 H -0.219 1.219 30 C 0.028 3.972 31 C -0.179 4.179 32 H 0.106 0.894 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.231 0.769 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.092 0.908 47 H 0.075 0.925 48 H 0.061 0.939 49 H 0.027 0.973 50 H 0.125 0.875 51 H 0.084 0.916 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 18.297 8.220 -1.784 20.138 hybrid contribution 0.049 -1.699 -0.379 1.741 sum 18.346 6.521 -2.164 19.590 Atomic orbital electron populations 1.20329 0.86649 1.02549 1.03745 1.22083 0.96908 0.89631 0.96007 1.77289 0.86231 1.22321 1.26994 1.46038 1.07392 1.04517 1.60990 0.72243 1.20742 0.96566 0.85176 1.01724 1.20465 0.92936 0.98478 1.03261 1.19080 0.91088 0.94768 1.17179 1.19548 0.98135 0.93109 0.94587 0.88715 1.21854 1.00778 1.02190 0.95296 1.20401 0.80845 0.82508 0.86103 1.90670 1.60647 1.41904 1.46920 1.45910 1.48210 1.11862 1.29707 1.21555 0.89472 0.96530 0.84635 1.22246 1.00203 0.97419 0.94899 1.22367 0.98641 0.96480 0.98824 1.22947 0.97429 0.99185 0.97420 1.21798 0.88347 0.91719 0.92858 0.93738 1.44541 1.09799 1.06660 1.70976 1.19073 0.93954 0.87912 1.33747 0.90552 1.24769 0.97650 0.97033 1.01152 1.69812 1.18850 1.21270 1.46830 0.86048 0.80839 0.81647 0.77242 1.20607 1.21831 1.21876 1.22023 1.00280 0.81725 0.93151 1.23343 0.94658 0.98558 1.01387 0.89429 0.91716 0.90544 0.90158 0.91158 0.89640 0.91662 0.91442 0.91780 0.76893 0.91357 0.92418 0.92409 0.92484 0.90805 0.92502 0.93851 0.97264 0.87531 0.91611 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.05 8.83 36.01 0.32 -0.73 16 2 C 0.12 1.76 6.53 -82.41 -0.54 1.22 16 3 N -0.31 -4.46 12.70 33.67 0.43 -4.04 16 4 N -0.48 -5.35 7.36 33.48 0.25 -5.10 16 5 H 0.43 3.30 8.96 -182.62 -1.64 1.66 16 6 C 0.09 0.92 7.21 -82.26 -0.59 0.33 16 7 C -0.09 -0.60 10.10 36.01 0.36 -0.24 16 8 C -0.21 -2.69 4.43 -105.05 -0.47 -3.16 16 9 C -0.03 -0.36 2.84 -92.92 -0.26 -0.62 16 10 H 0.09 0.87 6.76 -51.93 -0.35 0.52 16 11 C -0.14 -1.53 8.88 37.16 0.33 -1.20 16 12 C 0.52 7.56 5.64 -10.98 -0.06 7.50 16 13 O -0.53 -9.26 11.49 5.56 0.06 -9.20 16 14 N -0.71 -10.52 5.15 -45.35 -0.23 -10.75 16 15 C 0.16 2.85 0.74 -129.37 -0.10 2.76 16 16 C -0.11 -1.76 5.22 -25.79 -0.13 -1.89 16 17 C -0.12 -1.86 6.84 -25.16 -0.17 -2.04 16 18 C -0.13 -2.32 6.21 -24.87 -0.15 -2.47 16 19 C 0.16 3.12 3.64 -65.60 -0.24 2.88 16 20 H 0.05 0.85 8.01 -51.92 -0.42 0.43 16 21 N -0.60 -14.28 3.03 -160.96 -0.49 -14.77 16 22 C -0.22 -5.79 10.01 -15.06 -0.15 -5.94 16 23 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 24 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 25 N -0.92 -26.16 10.06 55.49 0.56 -25.61 16 26 Si 0.91 21.62 29.55 -169.99 -5.02 16.59 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 29 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 30 C 0.15 3.63 5.93 -2.44 -0.01 3.61 16 31 C -0.14 -2.79 5.78 -24.60 -0.14 -2.94 16 32 H 0.09 1.36 7.48 -51.93 -0.39 0.97 16 33 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 34 H 0.08 1.06 5.01 -51.93 -0.26 0.80 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.53 7.08 -51.93 -0.37 0.16 16 38 H 0.06 0.65 7.73 -51.93 -0.40 0.25 16 39 H 0.07 0.81 5.63 -51.93 -0.29 0.52 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.40 5.26 8.05 -40.82 -0.33 4.93 16 42 H 0.07 1.16 7.37 -51.93 -0.38 0.78 16 43 H 0.06 0.92 7.41 -51.93 -0.38 0.54 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.07 1.48 8.09 -51.93 -0.42 1.06 16 47 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 48 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 49 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 50 H 0.11 2.90 5.81 -51.93 -0.30 2.60 16 51 H 0.07 1.34 7.62 -51.93 -0.40 0.94 16 52 H 0.07 1.32 6.84 -51.93 -0.36 0.97 16 LS Contribution 394.09 15.07 5.94 5.94 Total: -1.00 -32.37 394.09 -10.23 -42.60 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -9.61 Total: 7.63 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -2.11 Total: -3.29 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: 0.51 Total: -60.27 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.06 Total: -9.20 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.37 -10.23 -42.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992341498.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.146 kcal (2) G-P(sol) polarization free energy of solvation -32.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds