Wall clock time and date at job start Wed Apr 1 2020 03:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30837 * 125.90206 * 2 1 4 4 N 1.40082 * 108.20709 * 180.26119 * 3 2 1 5 5 H 0.96994 * 126.04282 * 179.70073 * 4 3 2 6 6 C 1.34945 * 107.92293 * 359.71706 * 4 3 2 7 7 C 1.50705 * 126.12775 * 180.02562 * 6 4 3 8 8 C 1.35316 * 107.74853 * 359.97438 * 6 4 3 9 9 C 1.50703 * 126.04236 * 179.97438 * 8 6 4 10 10 H 1.08999 * 109.46692 * 4.64865 * 9 8 6 11 11 C 1.53000 * 109.47214 * 244.64963 * 9 8 6 12 12 C 1.50700 * 109.46816 * 124.64959 * 9 8 6 13 13 O 1.21274 * 120.00335 * 0.02562 * 12 9 8 14 14 N 1.34779 * 119.99486 * 180.02562 * 12 9 8 15 15 C 1.46506 * 119.99576 * 179.97438 * 14 12 9 16 16 C 1.53572 * 112.24474 * 300.35509 * 15 14 12 17 17 C 1.54228 * 106.67600 * 238.84122 * 16 15 14 18 18 C 1.54761 * 104.15326 * 335.04881 * 17 16 15 19 19 C 1.54778 * 103.21525 * 37.81002 * 18 17 16 20 20 H 1.09009 * 111.86471 * 85.85347 * 19 18 17 21 21 N 1.46972 * 108.69034 * 209.80474 * 19 18 17 22 22 C 1.36942 * 125.57617 * 294.14115 * 21 19 18 23 23 H 1.07998 * 120.00186 * 0.02562 * 22 21 19 24 24 C 1.38816 * 119.99483 * 180.02562 * 22 21 19 25 25 N 1.31620 * 120.00244 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99430 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47685 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47272 * 120.00333 * 26 24 22 29 29 H 1.48510 * 109.47057 * 239.99705 * 26 24 22 30 30 C 1.47372 * 108.84223 * 114.40911 * 21 19 18 31 31 C 1.54917 * 112.77627 * 64.06773 * 15 14 12 32 32 H 1.09005 * 109.46968 * 275.81579 * 1 2 3 33 33 H 1.09008 * 109.47058 * 35.80667 * 1 2 3 34 34 H 1.08997 * 109.47536 * 155.81484 * 1 2 3 35 35 H 1.08995 * 109.47304 * 269.97551 * 7 6 4 36 36 H 1.09002 * 109.47015 * 29.97836 * 7 6 4 37 37 H 1.09000 * 109.47083 * 149.97532 * 7 6 4 38 38 H 1.09003 * 109.46998 * 174.36860 * 11 9 8 39 39 H 1.08997 * 109.47376 * 294.36862 * 11 9 8 40 40 H 1.09000 * 109.47291 * 54.36814 * 11 9 8 41 41 H 0.97000 * 120.00034 * 0.02562 * 14 12 9 42 42 H 1.08999 * 110.02310 * 119.53900 * 16 15 14 43 43 H 1.09006 * 110.05813 * 358.16526 * 16 15 14 44 44 H 1.09000 * 110.49179 * 216.38479 * 17 16 15 45 45 H 1.09000 * 110.49199 * 93.71578 * 17 16 15 46 46 H 1.08999 * 110.67078 * 279.38087 * 18 17 16 47 47 H 1.08997 * 110.80687 * 156.30777 * 18 17 16 48 48 H 0.96998 * 119.99320 * 180.02562 * 25 24 22 49 49 H 1.09002 * 110.36677 * 93.87168 * 30 21 19 50 50 H 1.09002 * 110.36720 * 216.19908 * 30 21 19 51 51 H 1.08999 * 110.97095 * 204.56939 * 31 15 14 52 52 H 1.09004 * 110.96985 * 328.29255 * 31 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 -0.0061 5 1 4.3908 1.2077 -0.0115 6 6 3.6142 -0.7154 -0.0034 7 6 4.8349 -1.5991 -0.0074 8 6 2.3271 -1.1330 0.0048 9 6 1.8598 -2.5658 0.0098 10 1 2.7214 -3.2286 0.0891 11 6 1.1069 -2.8612 -1.2890 12 6 0.9428 -2.7909 1.1843 13 8 0.6929 -1.8778 1.9423 14 7 0.4004 -4.0070 1.3922 15 6 -0.4907 -4.2261 2.5344 16 6 0.2010 -3.9380 3.8749 17 6 0.1352 -5.2418 4.6961 18 6 -1.0917 -5.9897 4.1211 19 6 -1.0134 -5.6850 2.6056 20 1 -0.3663 -6.3894 2.0828 21 7 -2.3760 -5.6827 2.0547 22 6 -3.2043 -6.7702 1.9733 23 1 -2.8697 -7.7320 2.3328 24 6 -4.4741 -6.6361 1.4287 25 7 -4.8818 -5.4640 0.9901 26 14 -5.6042 -8.1194 1.3183 27 1 -4.9138 -9.3104 1.8749 28 1 -6.8428 -7.8569 2.0944 29 1 -5.9545 -8.3701 -0.1030 30 6 -2.7026 -4.3200 1.5985 31 6 -1.7936 -3.3926 2.4470 32 1 -0.3633 0.1041 1.0224 33 1 -0.3633 0.8335 -0.6013 34 1 -0.3634 -0.9374 -0.4210 35 1 5.1241 -1.8146 -1.0359 36 1 5.6537 -1.0900 0.5012 37 1 4.6100 -2.5318 0.5098 38 1 0.8561 -3.9212 -1.3305 39 1 0.1919 -2.2698 -1.3212 40 1 1.7364 -2.6032 -2.1407 41 1 0.6005 -4.7374 0.7861 42 1 -0.3221 -3.1392 4.4007 43 1 1.2402 -3.6553 3.7063 44 1 -0.0138 -5.0201 5.7529 45 1 1.0420 -5.8294 4.5525 46 1 -2.0155 -5.5965 4.5453 47 1 -1.0119 -7.0614 4.3027 48 1 -5.7692 -5.3704 0.6099 49 1 -2.4762 -4.2106 0.5378 50 1 -3.7528 -4.0979 1.7880 51 1 -2.2168 -3.2252 3.4375 52 1 -1.6179 -2.4464 1.9352 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992341498.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:37 Heat of formation + Delta-G solvation = 34.786425 kcal Electronic energy + Delta-G solvation = -32608.195960 eV Core-core repulsion = 28608.576295 eV Total energy + Delta-G solvation = -3999.619665 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.45820 -41.39382 -39.46017 -35.99402 -35.25435 -34.58777 -34.15929 -33.23745 -31.60408 -30.85915 -28.97192 -28.36745 -27.67757 -27.41171 -25.68928 -25.10058 -22.69425 -21.58922 -21.22062 -21.08283 -20.06754 -19.92002 -18.83814 -18.48642 -17.37348 -17.09701 -16.79935 -16.22911 -16.02946 -15.76023 -15.38526 -15.20331 -14.80500 -14.60492 -14.55649 -14.43097 -14.15599 -13.88279 -13.66035 -13.50266 -13.44786 -13.27178 -13.17681 -13.02781 -12.89367 -12.85691 -12.76804 -12.62885 -12.45012 -12.22381 -12.19701 -11.94846 -11.84524 -11.63691 -11.48108 -11.41462 -11.25279 -11.19356 -10.68984 -10.41753 -10.11955 -9.77370 -9.28365 -8.80450 -7.69065 -5.13475 0.95690 1.50057 1.50761 1.60470 1.71873 1.88748 2.03868 2.43728 2.55595 3.40037 3.45430 3.69976 3.71504 3.80079 3.89699 4.02615 4.03156 4.17566 4.29216 4.35218 4.42214 4.44801 4.49721 4.51691 4.54182 4.65456 4.73651 4.74074 4.80498 4.85157 4.89527 4.93317 4.97903 5.01952 5.08453 5.13466 5.17181 5.18429 5.24555 5.26111 5.28139 5.37462 5.41373 5.53408 5.57386 5.70720 5.76190 5.82314 5.93036 6.36859 6.52613 6.79359 6.81494 7.17234 7.51814 7.85931 8.49888 9.31845 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016448 B = 0.003124 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.971312 B = 8959.622244 C = 9630.925135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.099 3.901 3 N -0.342 5.342 4 N -0.473 5.473 5 H 0.449 0.551 6 C 0.103 3.897 7 C -0.092 4.092 8 C -0.237 4.237 9 C -0.019 4.019 10 H 0.129 0.871 11 C -0.141 4.141 12 C 0.515 3.485 13 O -0.557 6.557 14 N -0.703 5.703 15 C 0.177 3.823 16 C -0.102 4.102 17 C -0.110 4.110 18 C -0.126 4.126 19 C 0.154 3.846 20 H 0.059 0.941 21 N -0.611 5.611 22 C -0.220 4.220 23 H 0.084 0.916 24 C -0.070 4.070 25 N -0.950 5.950 26 Si 0.974 3.026 27 H -0.264 1.264 28 H -0.298 1.298 29 H -0.296 1.296 30 C 0.164 3.836 31 C -0.128 4.128 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.072 0.928 39 H 0.045 0.955 40 H 0.081 0.919 41 H 0.407 0.593 42 H 0.055 0.945 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.083 0.917 46 H 0.045 0.955 47 H 0.065 0.935 48 H 0.243 0.757 49 H -0.013 1.013 50 H 0.068 0.932 51 H 0.057 0.943 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.397 4.736 -2.062 22.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.066 4.066 3 N -0.166 5.166 4 N -0.182 5.182 5 H 0.295 0.705 6 C -0.027 4.027 7 C -0.150 4.150 8 C -0.249 4.249 9 C -0.042 4.042 10 H 0.147 0.853 11 C -0.198 4.198 12 C 0.302 3.698 13 O -0.434 6.434 14 N -0.354 5.354 15 C 0.089 3.911 16 C -0.141 4.141 17 C -0.148 4.148 18 C -0.166 4.166 19 C 0.047 3.953 20 H 0.077 0.923 21 N -0.335 5.335 22 C -0.349 4.349 23 H 0.102 0.898 24 C -0.262 4.262 25 N -0.600 5.600 26 Si 0.803 3.197 27 H -0.189 1.189 28 H -0.226 1.226 29 H -0.224 1.224 30 C 0.039 3.961 31 C -0.167 4.167 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.120 0.880 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.100 0.900 41 H 0.243 0.757 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.101 0.899 46 H 0.064 0.936 47 H 0.083 0.917 48 H 0.053 0.947 49 H 0.005 0.995 50 H 0.086 0.914 51 H 0.076 0.924 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 22.045 6.599 -1.594 23.066 hybrid contribution -1.042 -1.135 -0.442 1.602 sum 21.003 5.464 -2.036 21.797 Atomic orbital electron populations 1.20204 0.87471 1.02658 1.02347 1.22171 0.96878 0.90753 0.96833 1.77194 0.87886 1.23090 1.28439 1.46087 1.06839 1.05285 1.60025 0.70518 1.21382 0.97390 0.85127 0.98762 1.20666 0.91351 0.97941 1.05076 1.19287 0.91807 0.94798 1.18982 1.19528 0.98371 0.93280 0.92974 0.85343 1.21842 1.00110 1.02250 0.95630 1.21016 0.80618 0.81613 0.86508 1.90668 1.61723 1.42741 1.48284 1.45845 1.47653 1.12645 1.29298 1.21311 0.88803 0.94390 0.86556 1.22160 1.00152 0.97877 0.93878 1.22304 0.98017 0.95261 0.99224 1.22815 0.97776 0.99986 0.96046 1.22053 0.86243 0.93244 0.93714 0.92312 1.44724 1.11657 1.06011 1.71128 1.19427 0.94271 0.88816 1.32388 0.89778 1.25550 0.99310 0.99405 1.01901 1.70071 1.18693 1.23094 1.48176 0.85065 0.78685 0.79324 0.76613 1.18866 1.22561 1.22353 1.21655 0.98872 0.83065 0.92498 1.23133 0.95735 0.97945 0.99919 0.91663 0.91084 0.90845 0.87959 0.89223 0.88767 0.90870 0.93635 0.90019 0.75693 0.92647 0.91517 0.90841 0.89882 0.93606 0.91674 0.94731 0.99535 0.91401 0.92419 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.03 8.83 71.24 0.63 -1.41 16 2 C 0.10 2.92 6.53 43.10 0.28 3.20 16 3 N -0.34 -9.93 12.70 -47.38 -0.60 -10.53 16 4 N -0.47 -9.64 7.36 -48.00 -0.35 -9.99 16 5 H 0.45 5.84 8.96 -213.34 -1.91 3.93 16 6 C 0.10 1.91 7.21 41.41 0.30 2.21 16 7 C -0.09 -0.77 10.10 71.24 0.72 -0.05 16 8 C -0.24 -5.70 4.43 -20.14 -0.09 -5.79 16 9 C -0.02 -0.40 2.84 -12.28 -0.03 -0.44 16 10 H 0.13 1.81 6.76 -2.39 -0.02 1.80 16 11 C -0.14 -2.78 8.88 71.98 0.64 -2.14 16 12 C 0.52 14.51 5.64 87.66 0.49 15.00 16 13 O -0.56 -19.53 11.49 -3.01 -0.03 -19.57 16 14 N -0.70 -19.95 5.15 -415.80 -2.14 -22.09 16 15 C 0.18 6.00 0.74 5.18 0.00 6.00 16 16 C -0.10 -3.09 5.22 31.20 0.16 -2.93 16 17 C -0.11 -2.94 6.84 31.61 0.22 -2.73 16 18 C -0.13 -4.32 6.21 31.80 0.20 -4.12 16 19 C 0.15 5.81 3.64 46.24 0.17 5.98 16 20 H 0.06 2.09 8.01 -2.38 -0.02 2.07 16 21 N -0.61 -29.71 3.03 -663.17 -2.01 -31.72 16 22 C -0.22 -11.72 10.01 84.03 0.84 -10.88 16 23 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 24 C -0.07 -3.86 5.49 84.86 0.47 -3.40 16 25 N -0.95 -56.36 10.06 21.65 0.22 -56.14 16 26 Si 0.97 45.08 29.55 68.60 2.03 47.10 16 27 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 28 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 29 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 30 C 0.16 8.17 5.93 86.94 0.52 8.69 16 31 C -0.13 -5.28 5.78 31.98 0.18 -5.09 16 32 H 0.06 2.19 7.48 -2.38 -0.02 2.17 16 33 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 34 H 0.07 2.17 5.01 -2.39 -0.01 2.15 16 35 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.09 0.69 7.08 -2.39 -0.02 0.68 16 38 H 0.07 1.31 7.73 -2.39 -0.02 1.29 16 39 H 0.04 1.10 5.63 -2.39 -0.01 1.09 16 40 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.41 9.92 8.05 -92.71 -0.75 9.18 16 42 H 0.05 1.84 7.37 -2.39 -0.02 1.82 16 43 H 0.07 1.94 7.41 -2.38 -0.02 1.92 16 44 H 0.07 1.78 8.14 -2.39 -0.02 1.77 16 45 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.05 1.82 8.09 -2.39 -0.02 1.80 16 47 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 48 H 0.24 14.14 8.31 -92.71 -0.77 13.37 16 49 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 50 H 0.07 3.94 5.81 -2.39 -0.01 3.93 16 51 H 0.06 2.45 7.62 -2.39 -0.02 2.43 16 52 H 0.06 2.60 6.84 -2.39 -0.02 2.58 16 Total: -1.00 -73.51 394.09 1.10 -72.41 By element: Atomic # 1 Polarization: 30.14 SS G_CDS: -1.70 Total: 28.43 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: 5.69 Total: 2.10 kcal Atomic # 7 Polarization: -125.59 SS G_CDS: -4.89 Total: -130.48 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.03 Total: -19.57 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -73.51 1.10 -72.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992341498.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.200 kcal (2) G-P(sol) polarization free energy of solvation -73.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds