Wall clock time and date at job start Wed Apr 1 2020 04:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 110.88542 * 2 1 4 4 C 1.55129 * 111.18995 * 236.06641 * 2 1 3 5 5 N 1.47424 * 104.72654 * 279.19298 * 4 2 1 6 6 C 1.34773 * 125.65135 * 155.82083 * 5 4 2 7 7 O 1.21626 * 119.99773 * 355.09246 * 6 5 4 8 8 C 1.47160 * 120.00141 * 175.10271 * 6 5 4 9 9 C 1.38410 * 126.88174 * 2.05775 * 8 6 5 10 10 C 1.39677 * 105.35459 * 180.27181 * 9 8 6 11 11 N 1.30858 * 107.86357 * 359.74808 * 10 9 8 12 12 N 1.28442 * 110.93133 * 0.02562 * 11 10 9 13 13 C 1.46497 * 125.19588 * 179.97438 * 12 11 10 14 14 C 1.53002 * 109.46797 * 83.76684 * 13 12 11 15 15 C 1.53784 * 113.61301 * 185.27562 * 14 13 12 16 16 C 1.53785 * 87.08037 * 220.02091 * 15 14 13 17 17 C 1.53781 * 87.08030 * 25.43367 * 16 15 14 18 18 C 1.47025 * 108.69872 * 335.55140 * 5 4 2 19 19 C 1.54322 * 107.27082 * 1.29096 * 18 5 4 20 20 H 1.09000 * 110.72280 * 140.55658 * 19 18 5 21 21 N 1.46501 * 110.72053 * 263.64615 * 19 18 5 22 22 C 1.36932 * 120.00528 * 277.75924 * 21 19 18 23 23 H 1.08004 * 119.99904 * 5.01529 * 22 21 19 24 24 C 1.38811 * 120.00108 * 185.01450 * 22 21 19 25 25 N 1.31614 * 120.00123 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 119.99774 * 179.97438 * 24 22 21 27 27 H 1.48508 * 109.46842 * 60.00434 * 26 24 22 28 28 H 1.48499 * 109.46832 * 180.02562 * 26 24 22 29 29 H 1.48494 * 109.47301 * 300.00451 * 26 24 22 30 30 H 1.08996 * 109.46917 * 296.11804 * 1 2 3 31 31 H 1.09002 * 109.47377 * 56.11682 * 1 2 3 32 32 H 1.09001 * 109.47231 * 176.11843 * 1 2 3 33 33 H 1.09002 * 109.47265 * 183.88249 * 3 2 1 34 34 H 1.09011 * 109.47309 * 303.88256 * 3 2 1 35 35 H 1.08998 * 109.47596 * 63.88271 * 3 2 1 36 36 H 1.08999 * 110.49612 * 160.34846 * 4 2 1 37 37 H 1.09004 * 110.34423 * 37.95825 * 4 2 1 38 38 H 1.07998 * 127.32137 * 359.97438 * 9 8 6 39 39 H 1.07996 * 126.06654 * 179.77072 * 10 9 8 40 40 H 1.08993 * 109.47268 * 323.77329 * 13 12 11 41 41 H 1.08998 * 109.47040 * 203.76378 * 13 12 11 42 42 H 1.08994 * 112.85451 * 316.47598 * 14 13 12 43 43 H 1.08996 * 113.61265 * 105.47517 * 15 14 13 44 44 H 1.08998 * 113.61304 * 334.56700 * 15 14 13 45 45 H 1.09001 * 113.61000 * 139.98285 * 16 15 14 46 46 H 1.09003 * 113.61407 * 270.88133 * 16 15 14 47 47 H 1.09003 * 113.61250 * 89.11776 * 17 16 15 48 48 H 1.09000 * 113.61288 * 220.01876 * 17 16 15 49 49 H 1.08998 * 109.87943 * 120.70691 * 18 5 4 50 50 H 1.08995 * 109.88421 * 241.71798 * 18 5 4 51 51 H 0.97001 * 119.99881 * 97.75013 * 21 19 18 52 52 H 0.97000 * 119.99701 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 6 2.0908 -0.8074 -1.2001 5 7 2.0138 -2.2162 -0.7726 6 6 1.9471 -3.2835 -1.5928 7 8 1.8571 -3.1218 -2.7950 8 6 1.9828 -4.6444 -1.0340 9 6 2.0422 -4.9915 0.3045 10 6 2.0620 -6.3880 0.3240 11 7 2.0117 -6.8074 -0.9145 12 7 1.9618 -5.8183 -1.7323 13 6 1.8981 -5.9315 -3.1915 14 6 0.4461 -6.1463 -3.6234 15 6 0.2837 -6.4064 -5.1303 16 6 -0.9688 -5.5161 -5.0691 17 6 -0.3305 -4.8377 -3.8455 18 6 2.0286 -2.2644 0.6968 19 6 2.0861 -0.8075 1.2024 20 1 1.4524 -0.6784 2.0798 21 7 3.4662 -0.4164 1.5003 22 6 4.0307 -0.7572 2.7004 23 1 3.4884 -1.3828 3.3940 24 6 5.2999 -0.2986 3.0256 25 7 5.9609 0.4633 2.1803 26 14 6.0695 -0.7630 4.6632 27 1 6.1880 -2.2406 4.7531 28 1 7.4183 -0.1506 4.7675 29 1 5.2140 -0.2667 5.7708 30 1 -0.3633 0.4524 0.9227 31 1 -0.3634 0.5729 -0.8531 32 1 -0.3634 -1.0253 -0.0696 33 1 3.1629 1.4034 -0.0696 34 1 1.6697 1.9732 -0.8532 35 1 1.7824 1.9302 0.9227 36 1 3.1252 -0.5272 -1.3986 37 1 1.4764 -0.6457 -2.0858 38 1 2.0722 -4.3243 1.1532 39 1 2.1099 -7.0109 1.2049 40 1 2.5029 -6.7778 -3.5170 41 1 2.2802 -5.0164 -3.6440 42 1 -0.0798 -6.8666 -2.9968 43 1 0.0683 -7.4469 -5.3731 44 1 1.0881 -5.9873 -5.7349 45 1 -1.0765 -4.8544 -5.9285 46 1 -1.8826 -6.0634 -4.8378 47 1 0.3060 -3.9898 -4.0988 48 1 -1.0417 -4.6118 -3.0510 49 1 1.1219 -2.7476 1.0609 50 1 2.9049 -2.8136 1.0410 51 1 3.9802 0.0839 0.8473 52 1 6.8477 0.7840 2.4077 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995798672.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:23 Heat of formation + Delta-G solvation = 85.005434 kcal Electronic energy + Delta-G solvation = -32127.273981 eV Core-core repulsion = 28129.831976 eV Total energy + Delta-G solvation = -3997.442006 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.45752 -39.90280 -38.97428 -37.81348 -34.16144 -33.53739 -32.94521 -30.88019 -30.66217 -28.34683 -27.97565 -26.78523 -26.34500 -25.73430 -24.17954 -23.57764 -22.62631 -21.30457 -21.13547 -19.57521 -19.34649 -18.78297 -17.27518 -16.80827 -16.29266 -16.25898 -15.76232 -15.44331 -15.16436 -14.80027 -14.33777 -14.17480 -14.10731 -13.87451 -13.68896 -13.54805 -13.07078 -12.85334 -12.73761 -12.49221 -12.40539 -12.26912 -12.02770 -11.85435 -11.73360 -11.57206 -11.55625 -11.03399 -10.91235 -10.88078 -10.77905 -10.60562 -10.58365 -10.42401 -10.38989 -10.28803 -9.90818 -9.76885 -9.68473 -9.07565 -8.99784 -8.86227 -8.31771 -7.08716 -5.86692 -3.17165 1.41412 2.41784 2.73600 3.27754 3.38810 3.40853 3.44011 3.44811 4.31310 4.45257 4.48493 4.50473 4.53941 4.64351 4.79453 4.88657 5.02344 5.09038 5.19174 5.24164 5.30590 5.35122 5.41284 5.50322 5.54357 5.62032 5.65306 5.68096 5.69334 5.71764 5.77164 5.84455 5.88154 5.90833 5.93889 6.06153 6.08566 6.12634 6.19374 6.23347 6.31025 6.34257 6.36841 6.50808 6.55035 6.64619 6.73330 6.83941 6.86675 7.61157 7.72146 8.12839 8.30271 8.32101 9.43390 9.97515 10.32299 11.35254 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013203 B = 0.003281 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.231250 B = 8531.949326 C = 9905.884912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.087 4.087 3 C -0.126 4.126 4 C 0.124 3.876 5 N -0.586 5.586 6 C 0.602 3.398 7 O -0.554 6.554 8 C -0.028 4.028 9 C -0.194 4.194 10 C -0.009 4.009 11 N -0.284 5.284 12 N -0.255 5.255 13 C 0.123 3.877 14 C -0.124 4.124 15 C -0.128 4.128 16 C -0.143 4.143 17 C -0.135 4.135 18 C 0.064 3.936 19 C 0.178 3.822 20 H 0.069 0.931 21 N -0.712 5.712 22 C -0.248 4.248 23 H 0.072 0.928 24 C -0.006 4.006 25 N -0.929 5.929 26 Si 0.906 3.094 27 H -0.285 1.285 28 H -0.292 1.292 29 H -0.285 1.285 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.046 0.954 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.173 0.827 39 H 0.184 0.816 40 H 0.092 0.908 41 H 0.121 0.879 42 H 0.093 0.907 43 H 0.069 0.931 44 H 0.085 0.915 45 H 0.068 0.932 46 H 0.076 0.924 47 H 0.105 0.895 48 H 0.059 0.941 49 H 0.061 0.939 50 H 0.086 0.914 51 H 0.387 0.613 52 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.186 -8.782 -10.238 18.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.089 4.089 3 C -0.184 4.184 4 C 0.002 3.998 5 N -0.317 5.317 6 C 0.390 3.610 7 O -0.435 6.435 8 C -0.156 4.156 9 C -0.223 4.223 10 C -0.184 4.184 11 N -0.116 5.116 12 N -0.043 5.043 13 C 0.003 3.997 14 C -0.143 4.143 15 C -0.166 4.166 16 C -0.180 4.180 17 C -0.172 4.172 18 C -0.062 4.062 19 C 0.066 3.934 20 H 0.087 0.913 21 N -0.354 5.354 22 C -0.379 4.379 23 H 0.090 0.910 24 C -0.203 4.203 25 N -0.576 5.576 26 Si 0.737 3.263 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.212 1.212 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.190 0.810 39 H 0.201 0.799 40 H 0.110 0.890 41 H 0.139 0.861 42 H 0.111 0.889 43 H 0.087 0.913 44 H 0.103 0.897 45 H 0.087 0.913 46 H 0.095 0.905 47 H 0.123 0.877 48 H 0.077 0.923 49 H 0.079 0.921 50 H 0.104 0.896 51 H 0.223 0.777 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.166 -9.750 -11.532 20.035 hybrid contribution 0.810 0.366 1.435 1.688 sum -12.356 -9.384 -10.097 18.512 Atomic orbital electron populations 1.21681 0.93839 1.01521 1.01685 1.22024 0.95362 0.96072 0.95428 1.21587 1.02105 0.93504 1.01206 1.22371 1.01245 0.78961 0.97227 1.47992 1.70162 1.05666 1.07881 1.16459 0.77184 0.82154 0.85196 1.90667 1.52662 1.86060 1.14105 1.21318 1.13292 0.88786 0.92229 1.22950 1.07072 0.96479 0.95796 1.23568 1.06299 0.94227 0.94346 1.73129 1.20066 1.16817 1.01599 1.45675 1.49578 1.01653 1.07375 1.22322 0.98394 1.05616 0.73336 1.22910 0.94463 0.99686 0.97258 1.22854 0.98734 1.00227 0.94764 1.22801 0.97157 0.99003 0.99051 1.23120 0.99322 0.97188 0.97562 1.23650 1.01101 1.02972 0.78443 1.21245 0.88755 0.89137 0.94295 0.91300 1.42449 1.08269 1.66149 1.18495 1.19142 0.98616 1.25671 0.94446 0.91049 1.24750 0.97546 0.99741 0.98251 1.69641 1.13544 1.38548 1.35837 0.86292 0.78437 0.77950 0.83621 1.21146 1.21745 1.21168 0.92206 0.92763 0.92849 0.91146 0.93528 0.91951 0.90922 0.90849 0.81004 0.79919 0.88953 0.86080 0.88897 0.91264 0.89656 0.91284 0.90517 0.87715 0.92255 0.92123 0.89622 0.77745 0.93318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.60 8.58 37.16 0.32 -1.28 16 2 C -0.09 -1.28 0.84 -152.25 -0.13 -1.41 16 3 C -0.13 -1.89 8.22 37.15 0.31 -1.59 16 4 C 0.12 1.93 5.85 -2.41 -0.01 1.92 16 5 N -0.59 -9.47 3.31 -171.75 -0.57 -10.04 16 6 C 0.60 10.04 7.83 -12.64 -0.10 9.94 16 7 O -0.55 -9.61 12.45 5.25 0.07 -9.55 16 8 C -0.03 -0.45 6.93 -82.06 -0.57 -1.02 16 9 C -0.19 -2.86 9.45 -38.98 -0.37 -3.23 16 10 C -0.01 -0.12 12.03 -17.43 -0.21 -0.33 16 11 N -0.28 -4.23 11.90 30.59 0.36 -3.87 16 12 N -0.26 -3.78 3.35 -57.14 -0.19 -3.97 16 13 C 0.12 1.52 5.80 -4.04 -0.02 1.50 16 14 C -0.12 -1.34 3.96 -89.80 -0.36 -1.70 16 15 C -0.13 -1.10 7.64 -25.91 -0.20 -1.30 16 16 C -0.14 -1.29 8.08 -25.92 -0.21 -1.49 16 17 C -0.13 -1.54 7.24 -25.92 -0.19 -1.73 16 18 C 0.06 1.03 4.40 -3.06 -0.01 1.02 16 19 C 0.18 3.09 2.85 -66.10 -0.19 2.90 16 20 H 0.07 1.19 8.04 -51.93 -0.42 0.77 16 21 N -0.71 -15.86 4.71 -51.66 -0.24 -16.10 16 22 C -0.25 -6.26 9.90 -15.06 -0.15 -6.41 16 23 H 0.07 1.73 7.83 -52.48 -0.41 1.32 16 24 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 25 N -0.93 -26.50 13.06 55.49 0.72 -25.77 16 26 Si 0.91 21.29 29.55 -169.99 -5.02 16.27 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 29 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.67 7.91 -51.93 -0.41 0.26 16 33 H 0.07 1.23 6.31 -51.93 -0.33 0.90 16 34 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.24 7.99 -51.93 -0.41 0.83 16 37 H 0.07 1.09 7.91 -51.93 -0.41 0.68 16 38 H 0.17 2.39 4.63 -52.49 -0.24 2.15 16 39 H 0.18 1.90 8.06 -52.49 -0.42 1.48 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.12 1.62 5.71 -51.93 -0.30 1.32 16 42 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.10 1.39 5.90 -51.93 -0.31 1.08 16 48 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.06 0.86 7.17 -51.93 -0.37 0.48 16 50 H 0.09 1.56 6.57 -51.93 -0.34 1.22 16 51 H 0.39 9.28 5.95 -40.82 -0.24 9.04 16 52 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 402.57 15.07 6.07 6.07 Total: -1.00 -29.22 402.57 -9.39 -38.61 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -8.40 Total: 12.81 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -2.18 Total: -4.46 kcal Atomic # 7 Polarization: -59.84 SS G_CDS: 0.09 Total: -59.75 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.07 Total: -9.55 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -29.22 -9.39 -38.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995798672.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.618 kcal (2) G-P(sol) polarization free energy of solvation -29.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds