Wall clock time and date at job start Wed Apr 1 2020 04:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 110.88542 * 2 1 4 4 C 1.55129 * 111.18995 * 236.06641 * 2 1 3 5 5 N 1.47424 * 104.72654 * 279.19298 * 4 2 1 6 6 C 1.34773 * 125.65135 * 155.82083 * 5 4 2 7 7 O 1.21626 * 119.99773 * 355.09246 * 6 5 4 8 8 C 1.47160 * 120.00141 * 175.10271 * 6 5 4 9 9 C 1.38410 * 126.88174 * 2.05775 * 8 6 5 10 10 C 1.39677 * 105.35459 * 180.27181 * 9 8 6 11 11 N 1.30858 * 107.86357 * 359.74808 * 10 9 8 12 12 N 1.28442 * 110.93133 * 0.02562 * 11 10 9 13 13 C 1.46497 * 125.19588 * 179.97438 * 12 11 10 14 14 C 1.53002 * 109.46797 * 83.76684 * 13 12 11 15 15 C 1.53784 * 113.61301 * 185.27562 * 14 13 12 16 16 C 1.53785 * 87.08037 * 220.02091 * 15 14 13 17 17 C 1.53781 * 87.08030 * 25.43367 * 16 15 14 18 18 C 1.47025 * 108.69872 * 335.55140 * 5 4 2 19 19 C 1.54322 * 107.27082 * 1.29096 * 18 5 4 20 20 H 1.09000 * 110.72280 * 140.55658 * 19 18 5 21 21 N 1.46501 * 110.72053 * 263.64615 * 19 18 5 22 22 C 1.36932 * 120.00528 * 277.75924 * 21 19 18 23 23 H 1.08004 * 119.99904 * 5.01529 * 22 21 19 24 24 C 1.38811 * 120.00108 * 185.01450 * 22 21 19 25 25 N 1.31614 * 120.00123 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 119.99774 * 179.97438 * 24 22 21 27 27 H 1.48508 * 109.46842 * 60.00434 * 26 24 22 28 28 H 1.48499 * 109.46832 * 180.02562 * 26 24 22 29 29 H 1.48494 * 109.47301 * 300.00451 * 26 24 22 30 30 H 1.08996 * 109.46917 * 296.11804 * 1 2 3 31 31 H 1.09002 * 109.47377 * 56.11682 * 1 2 3 32 32 H 1.09001 * 109.47231 * 176.11843 * 1 2 3 33 33 H 1.09002 * 109.47265 * 183.88249 * 3 2 1 34 34 H 1.09011 * 109.47309 * 303.88256 * 3 2 1 35 35 H 1.08998 * 109.47596 * 63.88271 * 3 2 1 36 36 H 1.08999 * 110.49612 * 160.34846 * 4 2 1 37 37 H 1.09004 * 110.34423 * 37.95825 * 4 2 1 38 38 H 1.07998 * 127.32137 * 359.97438 * 9 8 6 39 39 H 1.07996 * 126.06654 * 179.77072 * 10 9 8 40 40 H 1.08993 * 109.47268 * 323.77329 * 13 12 11 41 41 H 1.08998 * 109.47040 * 203.76378 * 13 12 11 42 42 H 1.08994 * 112.85451 * 316.47598 * 14 13 12 43 43 H 1.08996 * 113.61265 * 105.47517 * 15 14 13 44 44 H 1.08998 * 113.61304 * 334.56700 * 15 14 13 45 45 H 1.09001 * 113.61000 * 139.98285 * 16 15 14 46 46 H 1.09003 * 113.61407 * 270.88133 * 16 15 14 47 47 H 1.09003 * 113.61250 * 89.11776 * 17 16 15 48 48 H 1.09000 * 113.61288 * 220.01876 * 17 16 15 49 49 H 1.08998 * 109.87943 * 120.70691 * 18 5 4 50 50 H 1.08995 * 109.88421 * 241.71798 * 18 5 4 51 51 H 0.97001 * 119.99881 * 97.75013 * 21 19 18 52 52 H 0.97000 * 119.99701 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 6 2.0908 -0.8074 -1.2001 5 7 2.0138 -2.2162 -0.7726 6 6 1.9471 -3.2835 -1.5928 7 8 1.8571 -3.1218 -2.7950 8 6 1.9828 -4.6444 -1.0340 9 6 2.0422 -4.9915 0.3045 10 6 2.0620 -6.3880 0.3240 11 7 2.0117 -6.8074 -0.9145 12 7 1.9618 -5.8183 -1.7323 13 6 1.8981 -5.9315 -3.1915 14 6 0.4461 -6.1463 -3.6234 15 6 0.2837 -6.4064 -5.1303 16 6 -0.9688 -5.5161 -5.0691 17 6 -0.3305 -4.8377 -3.8455 18 6 2.0286 -2.2644 0.6968 19 6 2.0861 -0.8075 1.2024 20 1 1.4524 -0.6784 2.0798 21 7 3.4662 -0.4164 1.5003 22 6 4.0307 -0.7572 2.7004 23 1 3.4884 -1.3828 3.3940 24 6 5.2999 -0.2986 3.0256 25 7 5.9609 0.4633 2.1803 26 14 6.0695 -0.7630 4.6632 27 1 6.1880 -2.2406 4.7531 28 1 7.4183 -0.1506 4.7675 29 1 5.2140 -0.2667 5.7708 30 1 -0.3633 0.4524 0.9227 31 1 -0.3634 0.5729 -0.8531 32 1 -0.3634 -1.0253 -0.0696 33 1 3.1629 1.4034 -0.0696 34 1 1.6697 1.9732 -0.8532 35 1 1.7824 1.9302 0.9227 36 1 3.1252 -0.5272 -1.3986 37 1 1.4764 -0.6457 -2.0858 38 1 2.0722 -4.3243 1.1532 39 1 2.1099 -7.0109 1.2049 40 1 2.5029 -6.7778 -3.5170 41 1 2.2802 -5.0164 -3.6440 42 1 -0.0798 -6.8666 -2.9968 43 1 0.0683 -7.4469 -5.3731 44 1 1.0881 -5.9873 -5.7349 45 1 -1.0765 -4.8544 -5.9285 46 1 -1.8826 -6.0634 -4.8378 47 1 0.3060 -3.9898 -4.0988 48 1 -1.0417 -4.6118 -3.0510 49 1 1.1219 -2.7476 1.0609 50 1 2.9049 -2.8136 1.0410 51 1 3.9802 0.0839 0.8473 52 1 6.8477 0.7840 2.4077 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995798672.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:22 Heat of formation + Delta-G solvation = 69.402629 kcal Electronic energy + Delta-G solvation = -32127.950570 eV Core-core repulsion = 28129.831976 eV Total energy + Delta-G solvation = -3998.118594 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.58289 -41.21798 -39.81990 -39.13202 -35.76656 -34.93180 -34.04682 -32.61798 -31.87974 -29.59755 -29.15088 -28.02524 -27.59980 -26.53753 -25.85659 -24.57622 -23.94736 -22.56838 -22.35389 -20.60101 -20.36326 -20.08015 -19.05110 -18.07621 -17.56992 -17.40316 -16.95546 -16.49985 -16.36874 -16.28648 -15.76310 -15.48115 -15.28174 -15.10733 -14.89401 -14.72363 -14.41922 -14.22405 -13.86031 -13.70661 -13.38551 -13.28553 -13.22689 -13.07848 -13.00912 -12.78828 -12.72717 -12.67142 -12.49909 -12.17015 -12.08204 -11.93796 -11.72297 -11.67673 -11.44106 -11.41566 -11.29022 -11.21793 -11.00781 -10.84761 -10.23855 -9.96971 -9.64300 -8.96644 -7.89353 -5.17407 0.20588 1.30473 1.52475 1.53555 1.59003 1.62972 2.05720 2.15122 2.60051 3.24306 3.41240 3.42004 3.61942 3.64067 3.69388 3.78234 3.80801 3.89923 3.92484 4.05396 4.18223 4.20007 4.30195 4.38385 4.42035 4.46691 4.56537 4.64305 4.66305 4.76870 4.79066 4.81812 4.84934 4.88876 4.91470 4.92857 5.02121 5.03420 5.04578 5.10109 5.11298 5.23317 5.25931 5.33641 5.41828 5.50424 5.56982 5.57669 5.62616 5.75766 6.32316 6.40903 6.92629 7.08584 7.40283 8.14327 8.37341 9.33628 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013203 B = 0.003281 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.231250 B = 8531.949326 C = 9905.884912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.075 4.075 3 C -0.121 4.121 4 C 0.125 3.875 5 N -0.588 5.588 6 C 0.598 3.402 7 O -0.565 6.565 8 C -0.050 4.050 9 C -0.198 4.198 10 C -0.008 4.008 11 N -0.294 5.294 12 N -0.257 5.257 13 C 0.119 3.881 14 C -0.120 4.120 15 C -0.117 4.117 16 C -0.134 4.134 17 C -0.140 4.140 18 C 0.076 3.924 19 C 0.170 3.830 20 H 0.078 0.922 21 N -0.723 5.723 22 C -0.234 4.234 23 H 0.083 0.917 24 C -0.071 4.071 25 N -0.968 5.968 26 Si 0.964 3.036 27 H -0.280 1.280 28 H -0.304 1.304 29 H -0.277 1.277 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.038 0.962 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.050 0.950 37 H 0.084 0.916 38 H 0.178 0.822 39 H 0.215 0.785 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.076 0.924 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.045 0.955 49 H 0.087 0.913 50 H 0.064 0.936 51 H 0.375 0.625 52 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.307 -10.209 -10.273 21.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.076 4.076 3 C -0.178 4.178 4 C 0.003 3.997 5 N -0.319 5.319 6 C 0.386 3.614 7 O -0.446 6.446 8 C -0.178 4.178 9 C -0.227 4.227 10 C -0.183 4.183 11 N -0.127 5.127 12 N -0.045 5.045 13 C -0.001 4.001 14 C -0.140 4.140 15 C -0.155 4.155 16 C -0.172 4.172 17 C -0.177 4.177 18 C -0.049 4.049 19 C 0.059 3.941 20 H 0.095 0.905 21 N -0.363 5.363 22 C -0.366 4.366 23 H 0.101 0.899 24 C -0.263 4.263 25 N -0.618 5.618 26 Si 0.794 3.206 27 H -0.206 1.206 28 H -0.231 1.231 29 H -0.203 1.203 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.102 0.898 38 H 0.195 0.805 39 H 0.232 0.768 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.109 0.891 45 H 0.095 0.905 46 H 0.105 0.895 47 H 0.103 0.897 48 H 0.064 0.936 49 H 0.105 0.895 50 H 0.082 0.918 51 H 0.209 0.791 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -15.345 -11.208 -11.568 22.247 hybrid contribution 1.402 0.778 1.400 2.128 sum -13.944 -10.430 -10.168 20.164 Atomic orbital electron populations 1.21638 0.91222 1.02057 1.03081 1.21979 0.97126 0.95175 0.93338 1.21516 1.00149 0.94063 1.02112 1.22349 1.00231 0.78960 0.98150 1.48016 1.70202 1.05797 1.07847 1.16652 0.76943 0.82626 0.85142 1.90663 1.53110 1.86324 1.14531 1.21362 1.14690 0.88748 0.93021 1.23111 1.06799 0.97251 0.95494 1.24110 1.05081 0.94148 0.94931 1.73130 1.20386 1.16975 1.02162 1.45906 1.49227 1.01280 1.08096 1.22472 0.99740 1.05516 0.72324 1.22879 0.93129 0.99163 0.98786 1.22843 0.98586 1.01257 0.92829 1.22792 0.97638 0.98811 0.97928 1.23050 0.99188 0.96956 0.98506 1.23415 1.01391 1.01616 0.78457 1.21484 0.86467 0.90301 0.95802 0.90472 1.42604 1.10144 1.66086 1.17462 1.19568 0.98256 1.23691 0.95042 0.89932 1.25455 0.98666 1.00993 1.01221 1.69801 1.13536 1.40887 1.37618 0.85347 0.76987 0.77630 0.80599 1.20588 1.23109 1.20274 0.91101 0.91079 0.92776 0.94253 0.90925 0.92391 0.93200 0.89798 0.80453 0.76818 0.87485 0.87418 0.89430 0.89540 0.89123 0.90534 0.89472 0.89723 0.93646 0.89487 0.91753 0.79067 0.94332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.69 8.58 71.98 0.62 -2.07 16 2 C -0.07 -2.11 0.84 -50.72 -0.04 -2.16 16 3 C -0.12 -3.55 8.22 71.98 0.59 -2.96 16 4 C 0.13 3.87 5.85 86.93 0.51 4.38 16 5 N -0.59 -18.78 3.31 -815.54 -2.70 -21.48 16 6 C 0.60 19.90 7.83 86.59 0.68 20.58 16 7 O -0.56 -19.77 12.45 -4.11 -0.05 -19.82 16 8 C -0.05 -1.57 6.93 40.79 0.28 -1.28 16 9 C -0.20 -5.59 9.45 22.66 0.21 -5.38 16 10 C -0.01 -0.19 12.03 85.19 1.02 0.83 16 11 N -0.29 -8.37 11.90 -57.14 -0.68 -9.05 16 12 N -0.26 -7.45 3.35 -334.70 -1.12 -8.57 16 13 C 0.12 2.87 5.80 86.38 0.50 3.37 16 14 C -0.12 -2.48 3.96 -10.27 -0.04 -2.52 16 15 C -0.12 -1.78 7.64 31.12 0.24 -1.55 16 16 C -0.13 -2.18 8.08 31.12 0.25 -1.92 16 17 C -0.14 -3.12 7.24 31.12 0.23 -2.89 16 18 C 0.08 2.39 4.40 86.73 0.38 2.77 16 19 C 0.17 5.74 2.85 46.18 0.13 5.87 16 20 H 0.08 2.52 8.04 -2.39 -0.02 2.50 16 21 N -0.72 -32.46 4.71 -317.34 -1.49 -33.96 16 22 C -0.23 -11.78 9.90 84.03 0.83 -10.95 16 23 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 24 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 25 N -0.97 -56.91 13.06 21.65 0.28 -56.63 16 26 Si 0.96 44.20 29.55 68.60 2.03 46.22 16 27 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 28 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 29 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 30 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.05 1.20 7.91 -2.39 -0.02 1.18 16 33 H 0.04 1.41 6.31 -2.39 -0.02 1.39 16 34 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 35 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.05 1.77 7.99 -2.39 -0.02 1.75 16 37 H 0.08 2.41 7.91 -2.39 -0.02 2.40 16 38 H 0.18 4.69 4.63 -2.91 -0.01 4.68 16 39 H 0.22 3.85 8.06 -2.91 -0.02 3.83 16 40 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.11 2.91 5.71 -2.39 -0.01 2.89 16 42 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.09 1.30 8.10 -2.39 -0.02 1.28 16 45 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.08 2.26 5.90 -2.39 -0.01 2.24 16 48 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.09 2.28 7.17 -2.39 -0.02 2.26 16 50 H 0.06 2.32 6.57 -2.39 -0.02 2.30 16 51 H 0.38 18.61 5.95 -92.71 -0.55 18.05 16 52 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -63.89 402.57 3.50 -60.39 By element: Atomic # 1 Polarization: 41.79 SS G_CDS: 0.37 Total: 42.16 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: 6.86 Total: 0.74 kcal Atomic # 7 Polarization: -123.97 SS G_CDS: -5.71 Total: -129.69 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.05 Total: -19.82 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -63.89 3.50 -60.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995798672.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.790 kcal (2) G-P(sol) polarization free energy of solvation -63.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds