Wall clock time and date at job start Wed Apr 1 2020 04:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 110.78273 * 2 1 4 4 C 1.54325 * 110.71912 * 123.23966 * 2 1 3 5 5 N 1.47020 * 107.27297 * 140.55457 * 4 2 1 6 6 C 1.34776 * 125.64880 * 181.01977 * 5 4 2 7 7 O 1.21282 * 119.99940 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00035 * 179.97438 * 6 5 4 9 9 C 1.50706 * 109.47294 * 180.02562 * 8 6 5 10 10 N 1.31062 * 125.96082 * 269.69720 * 9 8 6 11 11 N 1.40306 * 108.26739 * 179.86841 * 10 9 8 12 12 H 0.96998 * 126.08653 * 180.11147 * 11 10 9 13 13 C 1.34321 * 107.81695 * 0.35403 * 11 10 9 14 14 C 1.35755 * 107.84084 * 359.83159 * 13 11 10 15 15 C 1.50843 * 124.10675 * 179.86852 * 14 13 11 16 16 C 1.53363 * 108.38100 * 343.44140 * 15 14 13 17 17 C 1.53106 * 109.50920 * 49.94609 * 16 15 14 18 18 C 1.50821 * 128.03500 * 179.88046 * 13 11 10 19 19 C 1.47427 * 108.70233 * 1.28965 * 5 4 2 20 20 C 1.55126 * 104.71948 * 335.55009 * 19 5 4 21 21 H 1.08995 * 111.19315 * 279.18965 * 20 19 5 22 22 N 1.46504 * 110.90278 * 155.27888 * 20 19 5 23 23 C 1.36939 * 120.00406 * 92.97636 * 22 20 19 24 24 H 1.07999 * 119.99238 * 359.97438 * 23 22 20 25 25 C 1.38803 * 119.99976 * 179.97438 * 23 22 20 26 26 N 1.31620 * 120.00289 * 0.02562 * 25 23 22 27 27 Si 1.86805 * 119.99828 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.47036 * 0.02562 * 27 25 23 29 29 H 1.48501 * 109.46978 * 120.00260 * 27 25 23 30 30 H 1.48497 * 109.47052 * 239.99999 * 27 25 23 31 31 H 1.08997 * 109.47662 * 298.21399 * 1 2 3 32 32 H 1.09000 * 109.46864 * 58.21485 * 1 2 3 33 33 H 1.09000 * 109.47291 * 178.20792 * 1 2 3 34 34 H 1.09002 * 109.47385 * 181.78069 * 3 2 1 35 35 H 1.08999 * 109.47310 * 301.78599 * 3 2 1 36 36 H 1.09002 * 109.46746 * 61.77966 * 3 2 1 37 37 H 1.09007 * 109.87921 * 21.13795 * 4 2 1 38 38 H 1.08995 * 110.01267 * 260.04917 * 4 2 1 39 39 H 1.09001 * 109.46665 * 60.00498 * 8 6 5 40 40 H 1.09000 * 109.47722 * 300.00830 * 8 6 5 41 41 H 1.09002 * 109.67866 * 103.16317 * 15 14 13 42 42 H 1.08990 * 109.68339 * 223.71670 * 15 14 13 43 43 H 1.09001 * 109.46489 * 169.95768 * 16 15 14 44 44 H 1.08993 * 109.46178 * 289.93557 * 16 15 14 45 45 H 1.08995 * 109.46882 * 49.74141 * 17 16 15 46 46 H 1.09007 * 109.46714 * 169.71985 * 17 16 15 47 47 H 1.09005 * 109.67873 * 43.66608 * 18 13 11 48 48 H 1.08996 * 109.71527 * 283.12627 * 18 13 11 49 49 H 1.08999 * 110.36438 * 94.48084 * 19 5 4 50 50 H 1.09005 * 110.36351 * 216.80032 * 19 5 4 51 51 H 0.96998 * 119.99599 * 272.97446 * 22 20 19 52 52 H 0.97000 * 120.00030 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0728 1.4304 0.0000 4 6 2.0759 -0.7912 1.2073 5 7 3.2444 -1.5508 0.7391 6 6 3.9922 -2.3836 1.4898 7 8 3.7190 -2.5564 2.6588 8 6 5.1670 -3.1010 0.8765 9 6 5.8290 -3.9640 1.9197 10 7 6.8039 -3.5980 2.7156 11 7 7.1331 -4.6867 3.5372 12 1 7.8194 -4.6983 4.2225 13 6 6.3322 -5.7116 3.2019 14 6 5.5156 -5.2915 2.2021 15 6 4.4681 -6.1561 1.5458 16 6 4.7688 -7.6213 1.8847 17 6 4.9778 -7.7643 3.3947 18 6 6.3002 -7.0983 3.7941 19 6 3.4665 -1.2456 -0.6861 20 6 2.0789 -0.7955 -1.2137 21 1 1.4452 -1.6536 -1.4375 22 7 2.2215 0.0695 -2.3875 23 6 2.1868 -0.4714 -3.6450 24 1 2.0548 -1.5358 -3.7714 25 6 2.3214 0.3483 -4.7571 26 7 2.4828 1.6455 -4.6029 27 14 2.2748 -0.3897 -6.4725 28 1 2.0849 -1.8592 -6.3741 29 1 1.1485 0.2045 -7.2365 30 1 3.5533 -0.1008 -7.1705 31 1 -0.3634 0.4858 0.9055 32 1 -0.3633 0.5413 -0.8736 33 1 -0.3634 -1.0272 -0.0321 34 1 3.1621 1.4057 -0.0319 35 1 1.6957 1.9622 -0.8735 36 1 1.7474 1.9425 0.9055 37 1 1.3128 -1.4759 1.5775 38 1 2.3734 -0.1044 1.9996 39 1 5.8833 -2.3702 0.5011 40 1 4.8214 -3.7269 0.0537 41 1 3.4814 -5.8871 1.9227 42 1 4.5000 -6.0151 0.4655 43 1 3.9312 -8.2454 1.5732 44 1 5.6713 -7.9371 1.3616 45 1 4.1546 -7.2829 3.9226 46 1 5.0095 -8.8215 3.6585 47 1 6.3661 -7.0351 4.8804 48 1 7.1363 -7.6820 3.4090 49 1 4.1947 -0.4415 -0.7927 50 1 3.8032 -2.1363 -1.2167 51 1 2.3405 1.0255 -2.2738 52 1 2.5772 2.2182 -5.3800 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995820989.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:56 Heat of formation + Delta-G solvation = 13.528091 kcal Electronic energy + Delta-G solvation = -31162.039364 eV Core-core repulsion = 27161.497868 eV Total energy + Delta-G solvation = -4000.541496 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.58651 -41.25714 -39.30019 -37.36181 -35.84029 -34.76715 -34.34910 -32.62255 -31.18645 -30.34607 -29.57561 -29.08740 -28.26710 -26.97426 -25.76334 -24.43710 -23.14384 -22.93797 -21.61150 -20.14913 -19.74277 -19.64534 -19.16199 -18.49928 -18.04846 -17.19158 -16.69440 -16.33242 -16.18151 -15.67259 -15.42804 -15.12252 -14.98136 -14.80943 -14.66219 -14.52700 -14.37642 -14.36787 -14.06657 -13.96766 -13.68425 -13.39275 -13.31595 -12.99495 -12.93761 -12.84514 -12.80854 -12.72381 -12.57080 -12.05218 -11.99479 -11.84922 -11.76566 -11.69576 -11.51779 -11.44893 -11.38136 -11.30176 -11.06470 -10.86631 -10.27616 -9.66017 -9.22090 -8.97514 -7.89819 -5.18268 0.86454 1.52502 1.53889 1.56018 1.58712 1.62862 1.88546 2.17281 2.61306 3.39626 3.43728 3.50601 3.67611 3.77757 3.85666 3.90459 3.94240 4.04063 4.12601 4.17938 4.31237 4.34039 4.35982 4.43551 4.46946 4.49802 4.60941 4.67407 4.68951 4.79310 4.79721 4.81310 4.86302 4.89614 5.02964 5.04343 5.08128 5.08429 5.17816 5.22486 5.23252 5.30995 5.34373 5.41927 5.44840 5.50516 5.52167 5.60749 5.68376 6.31809 6.44923 6.51078 6.69599 7.11598 7.40429 8.12874 8.37519 9.33407 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012834 B = 0.002623 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.106975 B =10671.710240 C =11639.851668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.079 4.079 3 C -0.129 4.129 4 C 0.124 3.876 5 N -0.609 5.609 6 C 0.535 3.465 7 O -0.577 6.577 8 C -0.055 4.055 9 C 0.090 3.910 10 N -0.328 5.328 11 N -0.464 5.464 12 H 0.449 0.551 13 C 0.090 3.910 14 C -0.247 4.247 15 C -0.044 4.044 16 C -0.115 4.115 17 C -0.113 4.113 18 C -0.053 4.053 19 C 0.082 3.918 20 C 0.175 3.825 21 H 0.069 0.931 22 N -0.719 5.719 23 C -0.236 4.236 24 H 0.081 0.919 25 C -0.070 4.070 26 N -0.967 5.967 27 Si 0.966 3.034 28 H -0.264 1.264 29 H -0.299 1.299 30 H -0.298 1.298 31 H 0.071 0.929 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.045 0.955 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.112 0.888 40 H 0.133 0.867 41 H 0.054 0.946 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.055 0.945 46 H 0.098 0.902 47 H 0.096 0.904 48 H 0.106 0.894 49 H 0.060 0.940 50 H 0.083 0.917 51 H 0.381 0.619 52 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.135 -18.355 16.594 25.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.080 4.080 3 C -0.186 4.186 4 C 0.002 3.998 5 N -0.342 5.342 6 C 0.324 3.676 7 O -0.458 6.458 8 C -0.097 4.097 9 C -0.075 4.075 10 N -0.152 5.152 11 N -0.173 5.173 12 H 0.295 0.705 13 C -0.040 4.040 14 C -0.258 4.258 15 C -0.082 4.082 16 C -0.153 4.153 17 C -0.151 4.151 18 C -0.091 4.091 19 C -0.044 4.044 20 C 0.064 3.936 21 H 0.087 0.913 22 N -0.360 5.360 23 C -0.368 4.368 24 H 0.099 0.901 25 C -0.263 4.263 26 N -0.618 5.618 27 Si 0.796 3.204 28 H -0.188 1.188 29 H -0.226 1.226 30 H -0.225 1.225 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.130 0.870 40 H 0.150 0.850 41 H 0.072 0.928 42 H 0.091 0.909 43 H 0.099 0.901 44 H 0.089 0.911 45 H 0.074 0.926 46 H 0.116 0.884 47 H 0.114 0.886 48 H 0.124 0.876 49 H 0.078 0.922 50 H 0.101 0.899 51 H 0.216 0.784 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.794 -17.657 17.429 25.477 hybrid contribution 0.076 0.302 -1.000 1.048 sum 5.871 -17.355 16.429 24.608 Atomic orbital electron populations 1.21645 0.92210 1.02235 1.02078 1.21807 0.96985 0.95480 0.93754 1.21652 1.00247 0.94878 1.01830 1.22014 0.87346 0.94228 0.96251 1.48449 1.29889 1.43755 1.12152 1.20311 0.83326 0.78551 0.85449 1.90665 1.71906 1.65375 1.17812 1.19978 0.94725 0.98655 0.96295 1.21429 0.94961 0.94340 0.96746 1.77330 1.19895 1.09683 1.08307 1.45901 1.31650 1.08059 1.31669 0.70533 1.21496 0.92846 0.92994 0.96658 1.20050 1.06081 0.94825 1.04822 1.20036 0.94845 0.93984 0.99345 1.21593 1.02695 0.94560 0.96413 1.21575 0.95794 1.01679 0.96056 1.20542 1.00616 0.86846 1.01134 1.23313 1.01127 1.00944 0.78994 1.21527 0.92682 0.93178 0.86174 0.91340 1.42568 1.86182 1.06692 1.00533 1.19677 1.39822 0.93009 0.84267 0.90143 1.25453 1.03711 0.95833 1.01260 1.69806 1.58558 1.03928 1.29489 0.85181 0.76301 0.78216 0.80700 1.18778 1.22642 1.22535 0.90985 0.93216 0.92005 0.93623 0.93069 0.91004 0.91063 0.91907 0.86969 0.84959 0.92785 0.90949 0.90148 0.91097 0.92646 0.88375 0.88553 0.87629 0.92154 0.89850 0.78363 0.94166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.40 8.49 71.98 0.61 -2.79 16 2 C -0.08 -2.40 0.85 -51.00 -0.04 -2.44 16 3 C -0.13 -4.04 7.55 71.98 0.54 -3.49 16 4 C 0.12 3.69 6.04 86.73 0.52 4.21 16 5 N -0.61 -18.99 3.32 -811.35 -2.70 -21.69 16 6 C 0.53 17.56 7.84 87.66 0.69 18.25 16 7 O -0.58 -22.88 16.36 -3.04 -0.05 -22.93 16 8 C -0.06 -1.52 5.13 29.10 0.15 -1.37 16 9 C 0.09 2.67 5.71 42.93 0.24 2.91 16 10 N -0.33 -10.04 12.71 -47.63 -0.61 -10.65 16 11 N -0.46 -10.40 7.34 -47.99 -0.35 -10.75 16 12 H 0.45 6.75 8.96 -213.19 -1.91 4.84 16 13 C 0.09 1.86 7.08 41.64 0.29 2.16 16 14 C -0.25 -6.18 5.91 -20.14 -0.12 -6.30 16 15 C -0.04 -0.89 6.05 30.02 0.18 -0.71 16 16 C -0.12 -1.55 5.90 30.75 0.18 -1.37 16 17 C -0.11 -1.27 5.90 30.75 0.18 -1.09 16 18 C -0.05 -0.59 6.30 30.01 0.19 -0.40 16 19 C 0.08 2.64 6.07 86.93 0.53 3.17 16 20 C 0.18 6.25 2.97 46.46 0.14 6.39 16 21 H 0.07 2.47 7.99 -2.39 -0.02 2.45 16 22 N -0.72 -32.67 5.15 -316.03 -1.63 -34.30 16 23 C -0.24 -11.98 9.96 84.03 0.84 -11.15 16 24 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 25 C -0.07 -3.78 5.50 84.86 0.47 -3.32 16 26 N -0.97 -56.35 13.06 21.65 0.28 -56.07 16 27 Si 0.97 43.95 29.55 68.60 2.03 45.98 16 28 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 29 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 30 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 31 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.06 1.58 8.13 -2.39 -0.02 1.56 16 34 H 0.04 1.50 7.42 -2.39 -0.02 1.48 16 35 H 0.05 1.83 6.75 -2.39 -0.02 1.82 16 36 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.07 2.04 7.82 -2.38 -0.02 2.02 16 38 H 0.06 1.87 7.85 -2.39 -0.02 1.86 16 39 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 40 H 0.13 2.99 7.58 -2.39 -0.02 2.98 16 41 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.07 1.38 7.94 -2.39 -0.02 1.36 16 43 H 0.08 0.88 8.14 -2.39 -0.02 0.87 16 44 H 0.07 0.87 8.11 -2.39 -0.02 0.86 16 45 H 0.05 0.79 8.11 -2.39 -0.02 0.77 16 46 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 47 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 48 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.06 2.10 7.69 -2.39 -0.02 2.08 16 50 H 0.08 2.48 7.48 -2.38 -0.02 2.46 16 51 H 0.38 18.70 5.45 -92.71 -0.51 18.19 16 52 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -71.22 408.77 1.09 -70.13 By element: Atomic # 1 Polarization: 39.10 SS G_CDS: -1.49 Total: 37.61 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: 5.60 Total: 2.67 kcal Atomic # 7 Polarization: -128.46 SS G_CDS: -5.00 Total: -133.46 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.05 Total: -22.93 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -71.22 1.09 -70.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995820989.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.659 kcal (2) G-P(sol) polarization free energy of solvation -71.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds