Wall clock time and date at job start Wed Apr 1 2020 04:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 110.78019 * 2 1 4 4 C 1.54319 * 110.72359 * 123.23887 * 2 1 3 5 5 N 1.47026 * 107.27181 * 140.55436 * 4 2 1 6 6 C 1.34777 * 125.64259 * 181.02349 * 5 4 2 7 7 O 1.21276 * 120.00543 * 0.02562 * 6 5 4 8 8 C 1.50705 * 119.99507 * 180.02562 * 6 5 4 9 9 C 1.50698 * 109.47008 * 180.02562 * 8 6 5 10 10 C 1.34849 * 125.96393 * 125.00087 * 9 8 6 11 11 N 1.36320 * 106.68906 * 179.97438 * 10 9 8 12 12 C 1.35422 * 107.39895 * 0.04688 * 11 10 9 13 13 N 1.30092 * 108.62439 * 359.93691 * 12 11 10 14 14 C 1.51039 * 123.98198 * 179.90166 * 12 11 10 15 15 C 1.53398 * 108.21139 * 344.06182 * 14 12 11 16 16 C 1.53412 * 109.31775 * 48.82235 * 15 14 12 17 17 C 1.46471 * 127.77728 * 180.02562 * 11 10 9 18 18 C 1.47413 * 108.70316 * 1.28935 * 5 4 2 19 19 C 1.55133 * 104.72547 * 335.55108 * 18 5 4 20 20 H 1.08993 * 111.22401 * 279.17619 * 19 18 5 21 21 N 1.46500 * 110.90684 * 155.27450 * 19 18 5 22 22 C 1.36940 * 120.00221 * 92.97824 * 21 19 18 23 23 H 1.08000 * 119.99574 * 359.97438 * 22 21 19 24 24 C 1.38810 * 119.99893 * 179.97438 * 22 21 19 25 25 N 1.31621 * 119.99736 * 179.97438 * 24 22 21 26 26 Si 1.86799 * 120.00384 * 0.02562 * 24 22 21 27 27 H 1.48496 * 109.47317 * 89.99497 * 26 24 22 28 28 H 1.48503 * 109.46865 * 210.00135 * 26 24 22 29 29 H 1.48497 * 109.46752 * 329.99487 * 26 24 22 30 30 H 1.08999 * 109.47153 * 298.21568 * 1 2 3 31 31 H 1.09003 * 109.47137 * 58.21853 * 1 2 3 32 32 H 1.08999 * 109.47091 * 178.21058 * 1 2 3 33 33 H 1.08999 * 109.47025 * 181.78762 * 3 2 1 34 34 H 1.09002 * 109.46883 * 301.78565 * 3 2 1 35 35 H 1.08992 * 109.47094 * 61.78504 * 3 2 1 36 36 H 1.09007 * 109.88049 * 21.13794 * 4 2 1 37 37 H 1.08996 * 110.01252 * 260.04574 * 4 2 1 38 38 H 1.08996 * 109.47308 * 59.99726 * 8 6 5 39 39 H 1.09008 * 109.46834 * 299.99967 * 8 6 5 40 40 H 1.07995 * 126.65928 * 0.02562 * 10 9 8 41 41 H 1.08997 * 109.71340 * 103.74318 * 14 12 11 42 42 H 1.08999 * 109.71385 * 224.38005 * 14 12 11 43 43 H 1.08997 * 109.50425 * 168.74650 * 15 14 12 44 44 H 1.08996 * 109.50734 * 288.83701 * 15 14 12 45 45 H 1.08997 * 109.64615 * 170.57774 * 16 15 14 46 46 H 1.08999 * 109.43087 * 50.50109 * 16 15 14 47 47 H 1.09002 * 109.58294 * 282.65416 * 17 11 10 48 48 H 1.09005 * 109.58543 * 42.92964 * 17 11 10 49 49 H 1.09005 * 110.36813 * 94.48365 * 18 5 4 50 50 H 1.08999 * 110.37070 * 216.80579 * 18 5 4 51 51 H 0.97002 * 120.00115 * 272.97744 * 21 19 18 52 52 H 0.96999 * 120.00186 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0761 -0.7911 1.2072 5 7 3.2446 -1.5507 0.7389 6 6 3.9923 -2.3835 1.4897 7 8 3.7193 -2.5564 2.6586 8 6 5.1679 -3.1001 0.8766 9 6 5.8297 -3.9631 1.9197 10 6 6.0653 -5.2871 1.8188 11 7 6.6773 -5.6651 2.9768 12 6 6.7964 -4.5605 3.7512 13 7 6.2882 -3.5480 3.1117 14 6 7.4234 -4.5564 5.1252 15 6 7.5086 -6.0067 5.6177 16 6 8.1253 -6.8807 4.5179 17 6 7.1359 -7.0042 3.3536 18 6 3.4666 -1.2455 -0.6861 19 6 2.0789 -0.7955 -1.2139 20 1 1.4448 -1.6532 -1.4380 21 7 2.2214 0.0696 -2.3876 22 6 2.1867 -0.4713 -3.6451 23 1 2.0547 -1.5357 -3.7716 24 6 2.3212 0.3485 -4.7572 25 7 2.2883 -0.1715 -5.9659 26 14 2.5503 2.1894 -4.5384 27 1 3.9992 2.5001 -4.4430 28 1 1.9666 2.9027 -5.7028 29 1 1.8669 2.6289 -3.2954 30 1 -0.3633 0.4859 0.9055 31 1 -0.3633 0.5413 -0.8736 32 1 -0.3633 -1.0272 -0.0321 33 1 3.1620 1.4058 -0.0321 34 1 1.6956 1.9622 -0.8736 35 1 1.7475 1.9425 0.9055 36 1 1.3130 -1.4758 1.5775 37 1 2.3736 -0.1043 1.9995 38 1 5.8839 -2.3688 0.5018 39 1 4.8229 -3.7257 0.0533 40 1 5.8180 -5.9242 0.9826 41 1 8.4238 -4.1269 5.0716 42 1 6.8078 -3.9716 5.8086 43 1 8.1325 -6.0519 6.5103 44 1 6.5085 -6.3703 5.8538 45 1 8.3427 -7.8717 4.9162 46 1 9.0480 -6.4209 4.1641 47 1 6.2830 -7.6094 3.6609 48 1 7.6298 -7.4741 2.5030 49 1 4.1947 -0.4414 -0.7930 50 1 3.8031 -2.1361 -1.2169 51 1 2.3404 1.0256 -2.2739 52 1 2.3820 0.4013 -6.7430 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995845193.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:04 Heat of formation + Delta-G solvation = 35.775620 kcal Electronic energy + Delta-G solvation = -30787.450367 eV Core-core repulsion = 26787.873596 eV Total energy + Delta-G solvation = -3999.576771 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.38363 -39.92165 -37.97055 -36.81711 -34.16593 -33.39813 -33.20551 -31.75975 -31.10331 -29.15663 -27.95531 -27.76112 -27.12478 -25.75032 -24.10162 -23.65887 -22.50791 -21.40465 -20.55201 -19.32636 -18.94018 -18.59638 -17.63750 -16.98566 -16.67238 -16.00482 -15.90379 -15.12056 -14.85071 -14.58841 -14.50805 -14.31359 -14.17733 -13.95374 -13.80629 -13.66125 -13.59541 -13.15478 -12.85995 -12.60659 -12.56263 -12.32134 -12.11729 -11.91880 -11.81487 -11.61125 -11.56546 -11.44722 -11.38530 -11.35252 -11.31251 -11.00835 -10.54979 -10.51734 -10.30952 -9.93727 -9.85978 -9.61130 -9.52854 -9.44166 -9.00402 -8.25643 -8.19701 -7.36293 -5.84069 -3.21027 1.98052 2.63377 3.01481 3.05673 3.32284 3.35183 3.41160 3.49107 4.01820 4.15986 4.22586 4.29919 4.52524 4.67865 4.74157 4.84668 4.93924 4.97558 5.01383 5.04999 5.09447 5.17281 5.22644 5.31262 5.36990 5.42506 5.45308 5.47811 5.54427 5.66005 5.67597 5.71749 5.72419 5.78702 5.89745 5.92546 5.95875 6.06717 6.16016 6.25169 6.26205 6.27507 6.40244 6.52095 6.56367 6.64851 6.75785 6.80217 7.13766 7.90275 7.93004 8.18249 8.34973 8.58466 9.12336 9.84501 10.03504 11.33741 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017880 B = 0.002275 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.654032 B =12305.814977 C =13162.927403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.091 4.091 3 C -0.138 4.138 4 C 0.124 3.876 5 N -0.618 5.618 6 C 0.531 3.469 7 O -0.533 6.533 8 C -0.050 4.050 9 C 0.023 3.977 10 C -0.050 4.050 11 N -0.459 5.459 12 C 0.202 3.798 13 N -0.458 5.458 14 C -0.032 4.032 15 C -0.125 4.125 16 C -0.134 4.134 17 C 0.104 3.896 18 C 0.073 3.927 19 C 0.187 3.813 20 H 0.077 0.923 21 N -0.735 5.735 22 C -0.249 4.249 23 H 0.092 0.908 24 C 0.009 3.991 25 N -0.930 5.930 26 Si 0.879 3.121 27 H -0.283 1.283 28 H -0.290 1.290 29 H -0.276 1.276 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.174 0.826 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.088 0.912 46 H 0.075 0.925 47 H 0.082 0.918 48 H 0.088 0.912 49 H 0.067 0.933 50 H 0.074 0.926 51 H 0.366 0.634 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.591 -12.142 20.966 26.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.093 4.093 3 C -0.195 4.195 4 C 0.001 3.999 5 N -0.353 5.353 6 C 0.319 3.681 7 O -0.409 6.409 8 C -0.091 4.091 9 C -0.107 4.107 10 C -0.183 4.183 11 N -0.143 5.143 12 C -0.060 4.060 13 N -0.176 5.176 14 C -0.071 4.071 15 C -0.163 4.163 16 C -0.172 4.172 17 C -0.019 4.019 18 C -0.053 4.053 19 C 0.075 3.925 20 H 0.095 0.905 21 N -0.377 5.377 22 C -0.379 4.379 23 H 0.110 0.890 24 C -0.187 4.187 25 N -0.577 5.577 26 Si 0.709 3.291 27 H -0.209 1.209 28 H -0.216 1.216 29 H -0.202 1.202 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.191 0.809 41 H 0.105 0.895 42 H 0.112 0.888 43 H 0.099 0.901 44 H 0.089 0.911 45 H 0.106 0.894 46 H 0.094 0.906 47 H 0.100 0.900 48 H 0.107 0.893 49 H 0.085 0.915 50 H 0.092 0.908 51 H 0.202 0.798 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.473 -11.783 21.708 26.454 hybrid contribution 0.232 0.454 -0.599 0.787 sum 9.706 -11.329 21.109 25.848 Atomic orbital electron populations 1.21689 0.93314 1.01948 1.01719 1.21904 0.96200 0.95752 0.95396 1.21768 1.01087 0.95032 1.01623 1.21935 0.87594 0.94169 0.96197 1.48483 1.30027 1.44552 1.12270 1.20056 0.83177 0.78874 0.85981 1.90687 1.70382 1.63719 1.16151 1.19843 0.95282 0.98273 0.95693 1.19971 1.04750 0.91401 0.94607 1.22209 1.06981 0.96967 0.92144 1.45266 1.45451 1.09194 1.14397 1.23236 1.04280 0.81814 0.96670 1.69935 1.13617 1.28774 1.05291 1.20148 1.00824 0.97427 0.88693 1.21717 1.02040 0.94301 0.98285 1.21942 0.98424 1.01778 0.95041 1.21935 0.98784 0.82013 0.99120 1.23431 1.01829 1.00892 0.79104 1.21356 0.92191 0.93322 0.85663 0.90514 1.42774 1.87848 1.05358 1.01751 1.19083 1.42839 0.94725 0.81257 0.89016 1.24658 1.01635 0.97327 0.95086 1.69692 1.56524 1.34466 0.96998 0.86645 0.78123 0.87199 0.77088 1.20930 1.21650 1.20197 0.93124 0.91581 0.92551 0.92434 0.91765 0.92830 0.91843 0.92055 0.87971 0.87809 0.80861 0.89506 0.88763 0.90060 0.91136 0.89366 0.90604 0.89967 0.89342 0.91455 0.90807 0.79841 0.92953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.82 8.49 37.16 0.32 -1.51 16 2 C -0.09 -1.40 0.85 -152.67 -0.13 -1.53 16 3 C -0.14 -2.07 7.55 37.16 0.28 -1.79 16 4 C 0.12 1.92 6.04 -3.06 -0.02 1.91 16 5 N -0.62 -10.05 3.32 -170.38 -0.57 -10.62 16 6 C 0.53 9.14 7.84 -10.98 -0.09 9.05 16 7 O -0.53 -11.00 15.90 5.56 0.09 -10.91 16 8 C -0.05 -0.71 5.27 -29.03 -0.15 -0.86 16 9 C 0.02 0.34 5.87 -82.72 -0.49 -0.15 16 10 C -0.05 -0.61 11.53 -16.76 -0.19 -0.80 16 11 N -0.46 -5.00 3.13 -113.74 -0.36 -5.36 16 12 C 0.20 2.61 7.65 -155.24 -1.19 1.42 16 13 N -0.46 -7.57 10.62 -6.88 -0.07 -7.64 16 14 C -0.03 -0.28 6.34 -27.51 -0.17 -0.45 16 15 C -0.13 -0.70 5.96 -26.31 -0.16 -0.86 16 16 C -0.13 -0.63 5.97 -26.37 -0.16 -0.79 16 17 C 0.10 0.66 6.97 -3.91 -0.03 0.63 16 18 C 0.07 1.21 6.07 -2.41 -0.01 1.19 16 19 C 0.19 3.37 2.97 -65.66 -0.20 3.17 16 20 H 0.08 1.45 7.99 -51.93 -0.41 1.03 16 21 N -0.73 -16.03 4.95 -51.23 -0.25 -16.28 16 22 C -0.25 -6.57 10.44 -15.06 -0.16 -6.73 16 23 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 24 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 25 N -0.93 -28.10 13.97 55.49 0.78 -27.33 16 26 Si 0.88 21.19 27.74 -169.99 -4.71 16.48 16 27 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 28 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 29 H -0.28 -6.20 6.52 56.52 0.37 -5.83 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 33 H 0.06 0.88 7.42 -51.93 -0.39 0.50 16 34 H 0.06 1.05 6.75 -51.93 -0.35 0.70 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.98 7.82 -51.93 -0.41 0.57 16 37 H 0.06 0.95 7.85 -51.93 -0.41 0.55 16 38 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.10 1.22 7.82 -51.92 -0.41 0.81 16 40 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.07 0.44 8.12 -51.93 -0.42 0.01 16 45 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 46 H 0.08 0.38 8.12 -51.93 -0.42 -0.04 16 47 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 49 H 0.07 1.14 7.70 -51.93 -0.40 0.74 16 50 H 0.07 1.17 7.48 -51.93 -0.39 0.78 16 51 H 0.37 7.91 3.31 -40.82 -0.14 7.78 16 52 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 406.00 15.07 6.12 6.12 Total: -1.00 -35.40 406.00 -10.42 -45.82 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -8.80 Total: 7.66 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -2.64 Total: 2.06 kcal Atomic # 7 Polarization: -66.76 SS G_CDS: -0.47 Total: -67.23 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.09 Total: -10.91 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.71 Total: 16.48 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.40 -10.42 -45.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995845193.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.591 kcal (2) G-P(sol) polarization free energy of solvation -35.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds