Wall clock time and date at job start Wed Apr 1 2020 04:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 110.78019 * 2 1 4 4 C 1.54319 * 110.72359 * 123.23887 * 2 1 3 5 5 N 1.47026 * 107.27181 * 140.55436 * 4 2 1 6 6 C 1.34777 * 125.64259 * 181.02349 * 5 4 2 7 7 O 1.21276 * 120.00543 * 0.02562 * 6 5 4 8 8 C 1.50705 * 119.99507 * 180.02562 * 6 5 4 9 9 C 1.50698 * 109.47008 * 180.02562 * 8 6 5 10 10 C 1.34849 * 125.96393 * 125.00087 * 9 8 6 11 11 N 1.36320 * 106.68906 * 179.97438 * 10 9 8 12 12 C 1.35422 * 107.39895 * 0.04688 * 11 10 9 13 13 N 1.30092 * 108.62439 * 359.93691 * 12 11 10 14 14 C 1.51039 * 123.98198 * 179.90166 * 12 11 10 15 15 C 1.53398 * 108.21139 * 344.06182 * 14 12 11 16 16 C 1.53412 * 109.31775 * 48.82235 * 15 14 12 17 17 C 1.46471 * 127.77728 * 180.02562 * 11 10 9 18 18 C 1.47413 * 108.70316 * 1.28935 * 5 4 2 19 19 C 1.55133 * 104.72547 * 335.55108 * 18 5 4 20 20 H 1.08993 * 111.22401 * 279.17619 * 19 18 5 21 21 N 1.46500 * 110.90684 * 155.27450 * 19 18 5 22 22 C 1.36940 * 120.00221 * 92.97824 * 21 19 18 23 23 H 1.08000 * 119.99574 * 359.97438 * 22 21 19 24 24 C 1.38810 * 119.99893 * 179.97438 * 22 21 19 25 25 N 1.31621 * 119.99736 * 179.97438 * 24 22 21 26 26 Si 1.86799 * 120.00384 * 0.02562 * 24 22 21 27 27 H 1.48496 * 109.47317 * 89.99497 * 26 24 22 28 28 H 1.48503 * 109.46865 * 210.00135 * 26 24 22 29 29 H 1.48497 * 109.46752 * 329.99487 * 26 24 22 30 30 H 1.08999 * 109.47153 * 298.21568 * 1 2 3 31 31 H 1.09003 * 109.47137 * 58.21853 * 1 2 3 32 32 H 1.08999 * 109.47091 * 178.21058 * 1 2 3 33 33 H 1.08999 * 109.47025 * 181.78762 * 3 2 1 34 34 H 1.09002 * 109.46883 * 301.78565 * 3 2 1 35 35 H 1.08992 * 109.47094 * 61.78504 * 3 2 1 36 36 H 1.09007 * 109.88049 * 21.13794 * 4 2 1 37 37 H 1.08996 * 110.01252 * 260.04574 * 4 2 1 38 38 H 1.08996 * 109.47308 * 59.99726 * 8 6 5 39 39 H 1.09008 * 109.46834 * 299.99967 * 8 6 5 40 40 H 1.07995 * 126.65928 * 0.02562 * 10 9 8 41 41 H 1.08997 * 109.71340 * 103.74318 * 14 12 11 42 42 H 1.08999 * 109.71385 * 224.38005 * 14 12 11 43 43 H 1.08997 * 109.50425 * 168.74650 * 15 14 12 44 44 H 1.08996 * 109.50734 * 288.83701 * 15 14 12 45 45 H 1.08997 * 109.64615 * 170.57774 * 16 15 14 46 46 H 1.08999 * 109.43087 * 50.50109 * 16 15 14 47 47 H 1.09002 * 109.58294 * 282.65416 * 17 11 10 48 48 H 1.09005 * 109.58543 * 42.92964 * 17 11 10 49 49 H 1.09005 * 110.36813 * 94.48365 * 18 5 4 50 50 H 1.08999 * 110.37070 * 216.80579 * 18 5 4 51 51 H 0.97002 * 120.00115 * 272.97744 * 21 19 18 52 52 H 0.96999 * 120.00186 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0761 -0.7911 1.2072 5 7 3.2446 -1.5507 0.7389 6 6 3.9923 -2.3835 1.4897 7 8 3.7193 -2.5564 2.6586 8 6 5.1679 -3.1001 0.8766 9 6 5.8297 -3.9631 1.9197 10 6 6.0653 -5.2871 1.8188 11 7 6.6773 -5.6651 2.9768 12 6 6.7964 -4.5605 3.7512 13 7 6.2882 -3.5480 3.1117 14 6 7.4234 -4.5564 5.1252 15 6 7.5086 -6.0067 5.6177 16 6 8.1253 -6.8807 4.5179 17 6 7.1359 -7.0042 3.3536 18 6 3.4666 -1.2455 -0.6861 19 6 2.0789 -0.7955 -1.2139 20 1 1.4448 -1.6532 -1.4380 21 7 2.2214 0.0696 -2.3876 22 6 2.1867 -0.4713 -3.6451 23 1 2.0547 -1.5357 -3.7716 24 6 2.3212 0.3485 -4.7572 25 7 2.2883 -0.1715 -5.9659 26 14 2.5503 2.1894 -4.5384 27 1 3.9992 2.5001 -4.4430 28 1 1.9666 2.9027 -5.7028 29 1 1.8669 2.6289 -3.2954 30 1 -0.3633 0.4859 0.9055 31 1 -0.3633 0.5413 -0.8736 32 1 -0.3633 -1.0272 -0.0321 33 1 3.1620 1.4058 -0.0321 34 1 1.6956 1.9622 -0.8736 35 1 1.7475 1.9425 0.9055 36 1 1.3130 -1.4758 1.5775 37 1 2.3736 -0.1043 1.9995 38 1 5.8839 -2.3688 0.5018 39 1 4.8229 -3.7257 0.0533 40 1 5.8180 -5.9242 0.9826 41 1 8.4238 -4.1269 5.0716 42 1 6.8078 -3.9716 5.8086 43 1 8.1325 -6.0519 6.5103 44 1 6.5085 -6.3703 5.8538 45 1 8.3427 -7.8717 4.9162 46 1 9.0480 -6.4209 4.1641 47 1 6.2830 -7.6094 3.6609 48 1 7.6298 -7.4741 2.5030 49 1 4.1947 -0.4414 -0.7930 50 1 3.8031 -2.1361 -1.2169 51 1 2.3404 1.0256 -2.2739 52 1 2.3820 0.4013 -6.7430 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995845193.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:03 Heat of formation + Delta-G solvation = 14.073417 kcal Electronic energy + Delta-G solvation = -30788.391445 eV Core-core repulsion = 26787.873596 eV Total energy + Delta-G solvation = -4000.517849 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.25645 -41.28086 -39.32750 -37.48018 -35.93290 -34.64216 -34.14612 -33.09741 -32.68183 -29.90404 -29.44737 -28.80264 -28.32016 -26.85464 -25.53686 -24.75482 -23.13752 -22.93032 -21.61838 -20.47850 -20.12321 -19.76654 -19.39657 -17.94705 -17.74544 -17.29727 -16.82494 -16.43709 -16.30955 -15.91103 -15.41935 -15.23473 -15.09862 -15.07634 -14.91927 -14.63474 -14.55640 -14.48955 -14.37386 -14.08492 -13.58165 -13.50049 -13.37025 -13.11395 -13.05006 -12.97466 -12.76891 -12.66760 -12.60074 -12.14360 -12.04923 -11.95784 -11.93587 -11.88004 -11.86126 -11.63799 -11.34758 -10.99507 -10.88017 -10.72112 -10.39557 -9.64602 -9.27536 -9.15725 -7.98468 -5.32484 1.08811 1.40857 1.43085 1.49891 1.70428 1.85244 1.97406 2.29358 2.51155 3.30566 3.31725 3.37516 3.61625 3.65512 3.72272 3.80334 3.80487 3.91166 4.00115 4.13006 4.16126 4.27301 4.32201 4.35308 4.38448 4.43109 4.44750 4.52920 4.58755 4.68603 4.77764 4.80221 4.82683 4.84226 4.87272 4.96146 4.97886 5.00391 5.03121 5.09581 5.15600 5.16480 5.27580 5.30965 5.39942 5.41294 5.47560 5.79826 5.82028 6.25196 6.33896 6.57089 7.10381 7.24454 7.24879 7.84947 8.04678 9.22463 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017880 B = 0.002275 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.654032 B =12305.814977 C =13162.927403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.080 4.080 3 C -0.137 4.137 4 C 0.125 3.875 5 N -0.616 5.616 6 C 0.529 3.471 7 O -0.570 6.570 8 C -0.045 4.045 9 C -0.018 4.018 10 C -0.044 4.044 11 N -0.456 5.456 12 C 0.190 3.810 13 N -0.513 5.513 14 C -0.035 4.035 15 C -0.119 4.119 16 C -0.129 4.129 17 C 0.093 3.907 18 C 0.084 3.916 19 C 0.178 3.822 20 H 0.067 0.933 21 N -0.734 5.734 22 C -0.226 4.226 23 H 0.064 0.936 24 C -0.058 4.058 25 N -0.981 5.981 26 Si 0.941 3.059 27 H -0.279 1.279 28 H -0.300 1.300 29 H -0.249 1.249 30 H 0.074 0.926 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.105 0.895 39 H 0.126 0.874 40 H 0.203 0.797 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.105 0.895 44 H 0.064 0.936 45 H 0.118 0.882 46 H 0.074 0.926 47 H 0.093 0.907 48 H 0.108 0.892 49 H 0.067 0.933 50 H 0.080 0.920 51 H 0.370 0.630 52 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.424 -12.827 22.972 28.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.082 4.082 3 C -0.194 4.194 4 C 0.002 3.998 5 N -0.350 5.350 6 C 0.318 3.682 7 O -0.449 6.449 8 C -0.085 4.085 9 C -0.147 4.147 10 C -0.178 4.178 11 N -0.139 5.139 12 C -0.073 4.073 13 N -0.232 5.232 14 C -0.073 4.073 15 C -0.157 4.157 16 C -0.166 4.166 17 C -0.027 4.027 18 C -0.042 4.042 19 C 0.068 3.932 20 H 0.085 0.915 21 N -0.378 5.378 22 C -0.357 4.357 23 H 0.082 0.918 24 C -0.249 4.249 25 N -0.631 5.631 26 Si 0.769 3.231 27 H -0.206 1.206 28 H -0.227 1.227 29 H -0.174 1.174 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.123 0.877 39 H 0.144 0.856 40 H 0.220 0.780 41 H 0.114 0.886 42 H 0.102 0.898 43 H 0.124 0.876 44 H 0.082 0.918 45 H 0.136 0.864 46 H 0.092 0.908 47 H 0.111 0.889 48 H 0.126 0.874 49 H 0.085 0.915 50 H 0.098 0.902 51 H 0.206 0.794 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.310 -12.488 23.779 28.770 hybrid contribution -0.038 0.540 -1.134 1.256 sum 10.272 -11.948 22.646 27.588 Atomic orbital electron populations 1.21680 0.92126 1.02262 1.02375 1.21841 0.97111 0.95721 0.93507 1.21772 1.00776 0.94532 1.02368 1.21972 0.87420 0.94196 0.96199 1.48503 1.30133 1.44365 1.11981 1.20603 0.83545 0.78493 0.85543 1.90662 1.71511 1.64968 1.17792 1.19860 0.94010 0.98488 0.96134 1.20230 1.06684 0.92881 0.94932 1.22655 1.05658 0.96389 0.93097 1.45565 1.44338 1.10416 1.13537 1.23881 1.03724 0.81896 0.97837 1.69847 1.15593 1.31195 1.06615 1.20331 1.00624 0.99786 0.86604 1.21717 1.02399 0.92115 0.99498 1.21973 0.97547 1.03116 0.93975 1.22357 0.99821 0.79856 1.00696 1.23195 1.00564 1.01156 0.79250 1.21493 0.93110 0.93086 0.85529 0.91499 1.42681 1.87950 1.05918 1.01209 1.19032 1.40074 0.93514 0.83046 0.91832 1.25379 1.02813 1.01965 0.94777 1.69862 1.59255 1.36050 0.97921 0.85631 0.78228 0.81623 0.77645 1.20576 1.22661 1.17352 0.90707 0.92762 0.92378 0.92876 0.92773 0.90398 0.91639 0.91748 0.87690 0.85592 0.77975 0.88592 0.89838 0.87644 0.91752 0.86360 0.90774 0.88901 0.87390 0.91479 0.90200 0.79370 0.93453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.33 8.49 71.98 0.61 -2.72 16 2 C -0.08 -2.34 0.85 -50.99 -0.04 -2.38 16 3 C -0.14 -3.80 7.55 71.98 0.54 -3.26 16 4 C 0.13 3.71 6.04 86.73 0.52 4.23 16 5 N -0.62 -19.57 3.32 -811.36 -2.70 -22.27 16 6 C 0.53 18.16 7.84 87.66 0.69 18.85 16 7 O -0.57 -23.87 15.90 -3.02 -0.05 -23.92 16 8 C -0.04 -1.25 5.27 29.10 0.15 -1.10 16 9 C -0.02 -0.55 5.87 41.40 0.24 -0.30 16 10 C -0.04 -1.02 11.53 83.22 0.96 -0.06 16 11 N -0.46 -9.35 3.13 -513.76 -1.61 -10.96 16 12 C 0.19 4.87 7.65 138.23 1.06 5.92 16 13 N -0.51 -17.35 10.62 -175.70 -1.87 -19.21 16 14 C -0.03 -0.58 6.34 30.09 0.19 -0.39 16 15 C -0.12 -1.08 5.96 30.87 0.18 -0.90 16 16 C -0.13 -0.81 5.97 30.83 0.18 -0.63 16 17 C 0.09 0.94 6.97 86.48 0.60 1.54 16 18 C 0.08 2.70 6.07 86.94 0.53 3.22 16 19 C 0.18 6.28 2.97 46.46 0.14 6.42 16 20 H 0.07 2.51 7.99 -2.39 -0.02 2.49 16 21 N -0.73 -31.39 4.95 -316.01 -1.56 -32.96 16 22 C -0.23 -11.98 10.44 84.03 0.88 -11.10 16 23 H 0.06 3.68 8.06 -2.91 -0.02 3.66 16 24 C -0.06 -3.24 5.50 84.86 0.47 -2.78 16 25 N -0.98 -60.71 13.97 21.65 0.30 -60.41 16 26 Si 0.94 43.57 27.74 68.60 1.90 45.47 16 27 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 28 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 29 H -0.25 -10.28 6.52 99.48 0.65 -9.63 16 30 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.06 1.49 8.13 -2.39 -0.02 1.47 16 33 H 0.05 1.51 7.42 -2.39 -0.02 1.50 16 34 H 0.05 1.62 6.75 -2.39 -0.02 1.61 16 35 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.07 1.93 7.82 -2.38 -0.02 1.91 16 37 H 0.06 1.90 7.85 -2.39 -0.02 1.88 16 38 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 39 H 0.13 2.85 7.82 -2.38 -0.02 2.83 16 40 H 0.20 3.20 8.06 -2.91 -0.02 3.17 16 41 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.06 0.68 8.12 -2.39 -0.02 0.66 16 45 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 46 H 0.07 0.54 8.12 -2.39 -0.02 0.52 16 47 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.11 0.69 8.14 -2.38 -0.02 0.67 16 49 H 0.07 2.20 7.70 -2.38 -0.02 2.18 16 50 H 0.08 2.47 7.48 -2.39 -0.02 2.45 16 51 H 0.37 15.34 3.31 -92.71 -0.31 15.04 16 52 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -79.39 406.00 2.87 -76.53 By element: Atomic # 1 Polarization: 32.62 SS G_CDS: 0.54 Total: 33.16 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: 7.91 Total: 14.56 kcal Atomic # 7 Polarization: -138.37 SS G_CDS: -7.44 Total: -145.81 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -0.05 Total: -23.92 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 1.90 Total: 45.47 kcal Total: -79.39 2.87 -76.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995845193.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.602 kcal (2) G-P(sol) polarization free energy of solvation -79.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds