Wall clock time and date at job start Wed Apr 1 2020 04:17:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53002 * 110.78019 * 2 1
4 4 C 1.54319 * 110.72359 * 123.23887 * 2 1 3
5 5 N 1.47026 * 107.27181 * 140.55436 * 4 2 1
6 6 C 1.34777 * 125.64259 * 181.02349 * 5 4 2
7 7 O 1.21276 * 120.00543 * 0.02562 * 6 5 4
8 8 C 1.50705 * 119.99507 * 180.02562 * 6 5 4
9 9 C 1.50698 * 109.47008 * 180.02562 * 8 6 5
10 10 C 1.34849 * 125.96393 * 125.00087 * 9 8 6
11 11 N 1.36320 * 106.68906 * 179.97438 * 10 9 8
12 12 C 1.35422 * 107.39895 * 0.04688 * 11 10 9
13 13 N 1.30092 * 108.62439 * 359.93691 * 12 11 10
14 14 C 1.51039 * 123.98198 * 179.90166 * 12 11 10
15 15 C 1.53398 * 108.21139 * 344.06182 * 14 12 11
16 16 C 1.53412 * 109.31775 * 48.82235 * 15 14 12
17 17 C 1.46471 * 127.77728 * 180.02562 * 11 10 9
18 18 C 1.47413 * 108.70316 * 1.28935 * 5 4 2
19 19 C 1.55133 * 104.72547 * 335.55108 * 18 5 4
20 20 H 1.08993 * 111.22401 * 279.17619 * 19 18 5
21 21 N 1.46500 * 110.90684 * 155.27450 * 19 18 5
22 22 C 1.36940 * 120.00221 * 92.97824 * 21 19 18
23 23 H 1.08000 * 119.99574 * 359.97438 * 22 21 19
24 24 C 1.38810 * 119.99893 * 179.97438 * 22 21 19
25 25 N 1.31621 * 119.99736 * 179.97438 * 24 22 21
26 26 Si 1.86799 * 120.00384 * 0.02562 * 24 22 21
27 27 H 1.48496 * 109.47317 * 89.99497 * 26 24 22
28 28 H 1.48503 * 109.46865 * 210.00135 * 26 24 22
29 29 H 1.48497 * 109.46752 * 329.99487 * 26 24 22
30 30 H 1.08999 * 109.47153 * 298.21568 * 1 2 3
31 31 H 1.09003 * 109.47137 * 58.21853 * 1 2 3
32 32 H 1.08999 * 109.47091 * 178.21058 * 1 2 3
33 33 H 1.08999 * 109.47025 * 181.78762 * 3 2 1
34 34 H 1.09002 * 109.46883 * 301.78565 * 3 2 1
35 35 H 1.08992 * 109.47094 * 61.78504 * 3 2 1
36 36 H 1.09007 * 109.88049 * 21.13794 * 4 2 1
37 37 H 1.08996 * 110.01252 * 260.04574 * 4 2 1
38 38 H 1.08996 * 109.47308 * 59.99726 * 8 6 5
39 39 H 1.09008 * 109.46834 * 299.99967 * 8 6 5
40 40 H 1.07995 * 126.65928 * 0.02562 * 10 9 8
41 41 H 1.08997 * 109.71340 * 103.74318 * 14 12 11
42 42 H 1.08999 * 109.71385 * 224.38005 * 14 12 11
43 43 H 1.08997 * 109.50425 * 168.74650 * 15 14 12
44 44 H 1.08996 * 109.50734 * 288.83701 * 15 14 12
45 45 H 1.08997 * 109.64615 * 170.57774 * 16 15 14
46 46 H 1.08999 * 109.43087 * 50.50109 * 16 15 14
47 47 H 1.09002 * 109.58294 * 282.65416 * 17 11 10
48 48 H 1.09005 * 109.58543 * 42.92964 * 17 11 10
49 49 H 1.09005 * 110.36813 * 94.48365 * 18 5 4
50 50 H 1.08999 * 110.37070 * 216.80579 * 18 5 4
51 51 H 0.97002 * 120.00115 * 272.97744 * 21 19 18
52 52 H 0.96999 * 120.00186 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0728 1.4305 0.0000
4 6 2.0761 -0.7911 1.2072
5 7 3.2446 -1.5507 0.7389
6 6 3.9923 -2.3835 1.4897
7 8 3.7193 -2.5564 2.6586
8 6 5.1679 -3.1001 0.8766
9 6 5.8297 -3.9631 1.9197
10 6 6.0653 -5.2871 1.8188
11 7 6.6773 -5.6651 2.9768
12 6 6.7964 -4.5605 3.7512
13 7 6.2882 -3.5480 3.1117
14 6 7.4234 -4.5564 5.1252
15 6 7.5086 -6.0067 5.6177
16 6 8.1253 -6.8807 4.5179
17 6 7.1359 -7.0042 3.3536
18 6 3.4666 -1.2455 -0.6861
19 6 2.0789 -0.7955 -1.2139
20 1 1.4448 -1.6532 -1.4380
21 7 2.2214 0.0696 -2.3876
22 6 2.1867 -0.4713 -3.6451
23 1 2.0547 -1.5357 -3.7716
24 6 2.3212 0.3485 -4.7572
25 7 2.2883 -0.1715 -5.9659
26 14 2.5503 2.1894 -4.5384
27 1 3.9992 2.5001 -4.4430
28 1 1.9666 2.9027 -5.7028
29 1 1.8669 2.6289 -3.2954
30 1 -0.3633 0.4859 0.9055
31 1 -0.3633 0.5413 -0.8736
32 1 -0.3633 -1.0272 -0.0321
33 1 3.1620 1.4058 -0.0321
34 1 1.6956 1.9622 -0.8736
35 1 1.7475 1.9425 0.9055
36 1 1.3130 -1.4758 1.5775
37 1 2.3736 -0.1043 1.9995
38 1 5.8839 -2.3688 0.5018
39 1 4.8229 -3.7257 0.0533
40 1 5.8180 -5.9242 0.9826
41 1 8.4238 -4.1269 5.0716
42 1 6.8078 -3.9716 5.8086
43 1 8.1325 -6.0519 6.5103
44 1 6.5085 -6.3703 5.8538
45 1 8.3427 -7.8717 4.9162
46 1 9.0480 -6.4209 4.1641
47 1 6.2830 -7.6094 3.6609
48 1 7.6298 -7.4741 2.5030
49 1 4.1947 -0.4414 -0.7930
50 1 3.8031 -2.1361 -1.2169
51 1 2.3404 1.0256 -2.2739
52 1 2.3820 0.4013 -6.7430
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000995845193.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:17:03
Heat of formation + Delta-G solvation = 14.073417 kcal
Electronic energy + Delta-G solvation = -30788.391445 eV
Core-core repulsion = 26787.873596 eV
Total energy + Delta-G solvation = -4000.517849 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-43.25645 -41.28086 -39.32750 -37.48018 -35.93290 -34.64216 -34.14612 -33.09741
-32.68183 -29.90404 -29.44737 -28.80264 -28.32016 -26.85464 -25.53686 -24.75482
-23.13752 -22.93032 -21.61838 -20.47850 -20.12321 -19.76654 -19.39657 -17.94705
-17.74544 -17.29727 -16.82494 -16.43709 -16.30955 -15.91103 -15.41935 -15.23473
-15.09862 -15.07634 -14.91927 -14.63474 -14.55640 -14.48955 -14.37386 -14.08492
-13.58165 -13.50049 -13.37025 -13.11395 -13.05006 -12.97466 -12.76891 -12.66760
-12.60074 -12.14360 -12.04923 -11.95784 -11.93587 -11.88004 -11.86126 -11.63799
-11.34758 -10.99507 -10.88017 -10.72112 -10.39557 -9.64602 -9.27536 -9.15725
-7.98468 -5.32484 1.08811 1.40857 1.43085 1.49891 1.70428 1.85244
1.97406 2.29358 2.51155 3.30566 3.31725 3.37516 3.61625 3.65512
3.72272 3.80334 3.80487 3.91166 4.00115 4.13006 4.16126 4.27301
4.32201 4.35308 4.38448 4.43109 4.44750 4.52920 4.58755 4.68603
4.77764 4.80221 4.82683 4.84226 4.87272 4.96146 4.97886 5.00391
5.03121 5.09581 5.15600 5.16480 5.27580 5.30965 5.39942 5.41294
5.47560 5.79826 5.82028 6.25196 6.33896 6.57089 7.10381 7.24454
7.24879 7.84947 8.04678 9.22463
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.017880 B = 0.002275 C = 0.002127
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1565.654032 B =12305.814977 C =13162.927403
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C -0.080 4.080
3 C -0.137 4.137
4 C 0.125 3.875
5 N -0.616 5.616
6 C 0.529 3.471
7 O -0.570 6.570
8 C -0.045 4.045
9 C -0.018 4.018
10 C -0.044 4.044
11 N -0.456 5.456
12 C 0.190 3.810
13 N -0.513 5.513
14 C -0.035 4.035
15 C -0.119 4.119
16 C -0.129 4.129
17 C 0.093 3.907
18 C 0.084 3.916
19 C 0.178 3.822
20 H 0.067 0.933
21 N -0.734 5.734
22 C -0.226 4.226
23 H 0.064 0.936
24 C -0.058 4.058
25 N -0.981 5.981
26 Si 0.941 3.059
27 H -0.279 1.279
28 H -0.300 1.300
29 H -0.249 1.249
30 H 0.074 0.926
31 H 0.053 0.947
32 H 0.057 0.943
33 H 0.052 0.948
34 H 0.053 0.947
35 H 0.077 0.923
36 H 0.065 0.935
37 H 0.064 0.936
38 H 0.105 0.895
39 H 0.126 0.874
40 H 0.203 0.797
41 H 0.096 0.904
42 H 0.083 0.917
43 H 0.105 0.895
44 H 0.064 0.936
45 H 0.118 0.882
46 H 0.074 0.926
47 H 0.093 0.907
48 H 0.108 0.892
49 H 0.067 0.933
50 H 0.080 0.920
51 H 0.370 0.630
52 H 0.257 0.743
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.424 -12.827 22.972 28.301
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C -0.082 4.082
3 C -0.194 4.194
4 C 0.002 3.998
5 N -0.350 5.350
6 C 0.318 3.682
7 O -0.449 6.449
8 C -0.085 4.085
9 C -0.147 4.147
10 C -0.178 4.178
11 N -0.139 5.139
12 C -0.073 4.073
13 N -0.232 5.232
14 C -0.073 4.073
15 C -0.157 4.157
16 C -0.166 4.166
17 C -0.027 4.027
18 C -0.042 4.042
19 C 0.068 3.932
20 H 0.085 0.915
21 N -0.378 5.378
22 C -0.357 4.357
23 H 0.082 0.918
24 C -0.249 4.249
25 N -0.631 5.631
26 Si 0.769 3.231
27 H -0.206 1.206
28 H -0.227 1.227
29 H -0.174 1.174
30 H 0.093 0.907
31 H 0.072 0.928
32 H 0.076 0.924
33 H 0.071 0.929
34 H 0.072 0.928
35 H 0.096 0.904
36 H 0.084 0.916
37 H 0.083 0.917
38 H 0.123 0.877
39 H 0.144 0.856
40 H 0.220 0.780
41 H 0.114 0.886
42 H 0.102 0.898
43 H 0.124 0.876
44 H 0.082 0.918
45 H 0.136 0.864
46 H 0.092 0.908
47 H 0.111 0.889
48 H 0.126 0.874
49 H 0.085 0.915
50 H 0.098 0.902
51 H 0.206 0.794
52 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges 10.310 -12.488 23.779 28.770
hybrid contribution -0.038 0.540 -1.134 1.256
sum 10.272 -11.948 22.646 27.588
Atomic orbital electron populations
1.21680 0.92126 1.02262 1.02375 1.21841 0.97111 0.95721 0.93507
1.21772 1.00776 0.94532 1.02368 1.21972 0.87420 0.94196 0.96199
1.48503 1.30133 1.44365 1.11981 1.20603 0.83545 0.78493 0.85543
1.90662 1.71511 1.64968 1.17792 1.19860 0.94010 0.98488 0.96134
1.20230 1.06684 0.92881 0.94932 1.22655 1.05658 0.96389 0.93097
1.45565 1.44338 1.10416 1.13537 1.23881 1.03724 0.81896 0.97837
1.69847 1.15593 1.31195 1.06615 1.20331 1.00624 0.99786 0.86604
1.21717 1.02399 0.92115 0.99498 1.21973 0.97547 1.03116 0.93975
1.22357 0.99821 0.79856 1.00696 1.23195 1.00564 1.01156 0.79250
1.21493 0.93110 0.93086 0.85529 0.91499 1.42681 1.87950 1.05918
1.01209 1.19032 1.40074 0.93514 0.83046 0.91832 1.25379 1.02813
1.01965 0.94777 1.69862 1.59255 1.36050 0.97921 0.85631 0.78228
0.81623 0.77645 1.20576 1.22661 1.17352 0.90707 0.92762 0.92378
0.92876 0.92773 0.90398 0.91639 0.91748 0.87690 0.85592 0.77975
0.88592 0.89838 0.87644 0.91752 0.86360 0.90774 0.88901 0.87390
0.91479 0.90200 0.79370 0.93453
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.33 8.49 71.98 0.61 -2.72 16
2 C -0.08 -2.34 0.85 -50.99 -0.04 -2.38 16
3 C -0.14 -3.80 7.55 71.98 0.54 -3.26 16
4 C 0.13 3.71 6.04 86.73 0.52 4.23 16
5 N -0.62 -19.57 3.32 -811.36 -2.70 -22.27 16
6 C 0.53 18.16 7.84 87.66 0.69 18.85 16
7 O -0.57 -23.87 15.90 -3.02 -0.05 -23.92 16
8 C -0.04 -1.25 5.27 29.10 0.15 -1.10 16
9 C -0.02 -0.55 5.87 41.40 0.24 -0.30 16
10 C -0.04 -1.02 11.53 83.22 0.96 -0.06 16
11 N -0.46 -9.35 3.13 -513.76 -1.61 -10.96 16
12 C 0.19 4.87 7.65 138.23 1.06 5.92 16
13 N -0.51 -17.35 10.62 -175.70 -1.87 -19.21 16
14 C -0.03 -0.58 6.34 30.09 0.19 -0.39 16
15 C -0.12 -1.08 5.96 30.87 0.18 -0.90 16
16 C -0.13 -0.81 5.97 30.83 0.18 -0.63 16
17 C 0.09 0.94 6.97 86.48 0.60 1.54 16
18 C 0.08 2.70 6.07 86.94 0.53 3.22 16
19 C 0.18 6.28 2.97 46.46 0.14 6.42 16
20 H 0.07 2.51 7.99 -2.39 -0.02 2.49 16
21 N -0.73 -31.39 4.95 -316.01 -1.56 -32.96 16
22 C -0.23 -11.98 10.44 84.03 0.88 -11.10 16
23 H 0.06 3.68 8.06 -2.91 -0.02 3.66 16
24 C -0.06 -3.24 5.50 84.86 0.47 -2.78 16
25 N -0.98 -60.71 13.97 21.65 0.30 -60.41 16
26 Si 0.94 43.57 27.74 68.60 1.90 45.47 16
27 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16
28 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16
29 H -0.25 -10.28 6.52 99.48 0.65 -9.63 16
30 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16
31 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16
32 H 0.06 1.49 8.13 -2.39 -0.02 1.47 16
33 H 0.05 1.51 7.42 -2.39 -0.02 1.50 16
34 H 0.05 1.62 6.75 -2.39 -0.02 1.61 16
35 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16
36 H 0.07 1.93 7.82 -2.38 -0.02 1.91 16
37 H 0.06 1.90 7.85 -2.39 -0.02 1.88 16
38 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16
39 H 0.13 2.85 7.82 -2.38 -0.02 2.83 16
40 H 0.20 3.20 8.06 -2.91 -0.02 3.17 16
41 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16
42 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16
43 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16
44 H 0.06 0.68 8.12 -2.39 -0.02 0.66 16
45 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16
46 H 0.07 0.54 8.12 -2.39 -0.02 0.52 16
47 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16
48 H 0.11 0.69 8.14 -2.38 -0.02 0.67 16
49 H 0.07 2.20 7.70 -2.38 -0.02 2.18 16
50 H 0.08 2.47 7.48 -2.39 -0.02 2.45 16
51 H 0.37 15.34 3.31 -92.71 -0.31 15.04 16
52 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16
Total: -1.00 -79.39 406.00 2.87 -76.53
By element:
Atomic # 1 Polarization: 32.62 SS G_CDS: 0.54 Total: 33.16 kcal
Atomic # 6 Polarization: 6.66 SS G_CDS: 7.91 Total: 14.56 kcal
Atomic # 7 Polarization: -138.37 SS G_CDS: -7.44 Total: -145.81 kcal
Atomic # 8 Polarization: -23.87 SS G_CDS: -0.05 Total: -23.92 kcal
Atomic # 14 Polarization: 43.57 SS G_CDS: 1.90 Total: 45.47 kcal
Total: -79.39 2.87 -76.53 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000995845193.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 90.602 kcal
(2) G-P(sol) polarization free energy of solvation -79.395 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.207 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.866 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.529 kcal
(6) G-S(sol) free energy of system = (1) + (5) 14.073 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds