Wall clock time and date at job start Wed Apr 1 2020 04:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 110.77901 * 2 1 4 4 C 1.54326 * 110.72263 * 123.23520 * 2 1 3 5 5 N 1.47025 * 107.27302 * 140.55712 * 4 2 1 6 6 C 1.34769 * 125.64902 * 181.02446 * 5 4 2 7 7 O 1.21284 * 120.00321 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00255 * 180.02562 * 6 5 4 9 9 C 1.50693 * 109.47562 * 179.97438 * 8 6 5 10 10 C 1.34856 * 125.96540 * 124.99506 * 9 8 6 11 11 N 1.36129 * 106.75094 * 180.11181 * 10 9 8 12 12 C 1.35614 * 107.39230 * 359.90326 * 11 10 9 13 13 N 1.30088 * 108.57644 * 0.07689 * 12 11 10 14 14 C 1.51047 * 124.03478 * 179.97438 * 12 11 10 15 15 C 1.53402 * 108.20877 * 344.17272 * 14 12 11 16 16 C 1.53147 * 109.23731 * 48.82599 * 15 14 12 17 17 C 1.46471 * 127.92795 * 180.27756 * 11 10 9 18 18 C 1.47427 * 108.69898 * 1.28911 * 5 4 2 19 19 C 1.55130 * 104.72602 * 335.55141 * 18 5 4 20 20 H 1.09000 * 110.90559 * 155.27514 * 19 18 5 21 21 N 1.46502 * 111.22562 * 279.17795 * 19 18 5 22 22 C 1.36938 * 120.00025 * 267.20480 * 21 19 18 23 23 H 1.08000 * 119.99605 * 0.02562 * 22 21 19 24 24 C 1.38808 * 119.99967 * 180.02562 * 22 21 19 25 25 N 1.31617 * 120.00028 * 180.02562 * 24 22 21 26 26 Si 1.86807 * 120.00060 * 359.97438 * 24 22 21 27 27 H 1.48499 * 109.46715 * 90.00245 * 26 24 22 28 28 H 1.48498 * 109.47059 * 209.99991 * 26 24 22 29 29 H 1.48494 * 109.47112 * 330.00298 * 26 24 22 30 30 H 1.09000 * 109.47545 * 298.21384 * 1 2 3 31 31 H 1.09001 * 109.47124 * 58.22073 * 1 2 3 32 32 H 1.09006 * 109.46654 * 178.21480 * 1 2 3 33 33 H 1.09002 * 109.47242 * 181.78792 * 3 2 1 34 34 H 1.09007 * 109.46992 * 301.78112 * 3 2 1 35 35 H 1.09000 * 109.47182 * 61.78066 * 3 2 1 36 36 H 1.08997 * 109.87844 * 21.14276 * 4 2 1 37 37 H 1.08996 * 110.01154 * 260.04897 * 4 2 1 38 38 H 1.09003 * 109.46812 * 60.00152 * 8 6 5 39 39 H 1.09003 * 109.47048 * 300.00179 * 8 6 5 40 40 H 1.07996 * 126.65111 * 0.02562 * 10 9 8 41 41 H 1.09002 * 109.71556 * 224.50068 * 14 12 11 42 42 H 1.08994 * 109.71493 * 103.85252 * 14 12 11 43 43 H 1.08995 * 109.51343 * 288.89481 * 15 14 12 44 44 H 1.09008 * 109.54501 * 168.76970 * 15 14 12 45 45 H 1.08999 * 109.46855 * 170.50397 * 16 15 14 46 46 H 1.08999 * 109.47018 * 50.51497 * 16 15 14 47 47 H 1.09002 * 109.58349 * 42.78990 * 17 11 10 48 48 H 1.09005 * 109.58201 * 282.51621 * 17 11 10 49 49 H 1.08999 * 110.36685 * 94.48741 * 18 5 4 50 50 H 1.09005 * 110.36469 * 216.80139 * 18 5 4 51 51 H 0.96998 * 119.99915 * 87.20244 * 21 19 18 52 52 H 0.97001 * 120.00459 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0760 -0.7911 1.2073 5 7 3.2446 -1.5507 0.7391 6 6 3.9923 -2.3834 1.4898 7 8 3.7193 -2.5563 2.6588 8 6 5.1679 -3.0999 0.8769 9 6 5.8306 -3.9620 1.9202 10 6 6.0665 -5.2860 1.8203 11 7 6.6756 -5.6644 2.9775 12 6 6.7967 -4.5581 3.7524 13 7 6.2886 -3.5460 3.1122 14 6 7.4236 -4.5529 5.1266 15 6 7.5094 -6.0030 5.6197 16 6 8.1258 -6.8739 4.5212 17 6 7.1390 -7.0015 3.3555 18 6 3.4666 -1.2455 -0.6860 19 6 2.0790 -0.7955 -1.2138 20 1 2.1850 -0.1519 -2.0871 21 7 1.2267 -1.9484 -1.5150 22 6 1.2019 -2.4693 -2.7812 23 1 1.8110 -2.0305 -3.5576 24 6 0.3939 -3.5613 -3.0666 25 7 0.3705 -4.0623 -4.2835 26 14 -0.6590 -4.3207 -1.7234 27 1 -1.9877 -3.6579 -1.7020 28 1 -0.8335 -5.7708 -1.9917 29 1 0.0071 -4.1370 -0.4090 30 1 -0.3634 0.4858 0.9055 31 1 -0.3633 0.5412 -0.8736 32 1 -0.3633 -1.0272 -0.0320 33 1 3.1620 1.4058 -0.0321 34 1 1.6956 1.9622 -0.8736 35 1 1.7473 1.9426 0.9055 36 1 1.3130 -1.4757 1.5776 37 1 2.3735 -0.1042 1.9996 38 1 5.8840 -2.3686 0.5022 39 1 4.8231 -3.7256 0.0536 40 1 5.8190 -5.9237 0.9846 41 1 6.8075 -3.9682 5.8097 42 1 8.4237 -4.1230 5.0729 43 1 6.5094 -6.3673 5.8549 44 1 8.1328 -6.0482 6.5128 45 1 8.3443 -7.8637 4.9220 46 1 9.0484 -6.4136 4.1674 47 1 7.6357 -7.4698 2.5057 48 1 6.2881 -7.6099 3.6621 49 1 4.1947 -0.4414 -0.7929 50 1 3.8032 -2.1361 -1.2167 51 1 0.6800 -2.3427 -0.8175 52 1 -0.1944 -4.8252 -4.4832 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995845213.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:07 Heat of formation + Delta-G solvation = 35.772773 kcal Electronic energy + Delta-G solvation = -31269.782356 eV Core-core repulsion = 27270.205462 eV Total energy + Delta-G solvation = -3999.576894 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.30267 -39.87679 -37.88716 -36.75616 -33.91046 -33.33894 -33.23861 -31.66404 -31.04895 -29.08379 -28.25404 -27.79890 -26.79962 -25.68094 -24.03976 -23.52890 -22.43579 -21.43284 -20.51192 -19.25328 -19.00928 -18.53550 -17.55777 -16.90655 -16.57309 -15.93289 -15.81819 -15.11897 -14.68982 -14.58328 -14.47557 -14.37031 -14.04039 -13.89424 -13.76288 -13.69353 -13.55776 -12.99474 -12.68235 -12.54982 -12.32681 -12.23655 -12.18941 -11.95427 -11.81106 -11.60992 -11.52248 -11.46589 -11.35910 -11.29989 -11.25582 -10.98526 -10.56392 -10.48193 -10.23548 -9.92107 -9.78988 -9.60512 -9.44857 -9.33749 -9.01688 -8.17375 -8.10730 -7.30840 -5.83229 -3.18881 2.06447 2.71204 3.09133 3.19224 3.34623 3.40048 3.43349 3.59856 4.08167 4.22299 4.29108 4.35767 4.54571 4.70618 4.80877 4.91926 5.00325 5.04624 5.05487 5.08299 5.14578 5.26046 5.28233 5.35149 5.37703 5.47178 5.49078 5.52504 5.61194 5.64948 5.72142 5.74499 5.77164 5.87461 5.93195 5.99528 6.03420 6.12309 6.15659 6.20797 6.29871 6.32593 6.34215 6.51504 6.63382 6.74035 6.77050 6.86157 7.21688 7.92533 8.03029 8.25431 8.36137 8.70457 9.13939 9.86895 10.06350 11.34601 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012102 B = 0.002947 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.134722 B = 9499.373287 C =10920.718071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.093 4.093 3 C -0.130 4.130 4 C 0.123 3.877 5 N -0.611 5.611 6 C 0.532 3.468 7 O -0.535 6.535 8 C -0.049 4.049 9 C 0.021 3.979 10 C -0.047 4.047 11 N -0.459 5.459 12 C 0.199 3.801 13 N -0.457 5.457 14 C -0.031 4.031 15 C -0.126 4.126 16 C -0.134 4.134 17 C 0.104 3.896 18 C 0.069 3.931 19 C 0.184 3.816 20 H 0.082 0.918 21 N -0.734 5.734 22 C -0.246 4.246 23 H 0.093 0.907 24 C 0.011 3.989 25 N -0.931 5.931 26 Si 0.876 3.124 27 H -0.283 1.283 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.175 0.825 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.070 0.930 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.075 0.925 47 H 0.088 0.912 48 H 0.082 0.918 49 H 0.059 0.941 50 H 0.082 0.918 51 H 0.364 0.636 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.275 -0.701 15.891 22.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.094 4.094 3 C -0.188 4.188 4 C 0.000 4.000 5 N -0.345 5.345 6 C 0.321 3.679 7 O -0.412 6.412 8 C -0.090 4.090 9 C -0.108 4.108 10 C -0.180 4.180 11 N -0.143 5.143 12 C -0.063 4.063 13 N -0.175 5.175 14 C -0.070 4.070 15 C -0.164 4.164 16 C -0.171 4.171 17 C -0.019 4.019 18 C -0.057 4.057 19 C 0.072 3.928 20 H 0.100 0.900 21 N -0.375 5.375 22 C -0.375 4.375 23 H 0.111 0.889 24 C -0.186 4.186 25 N -0.578 5.578 26 Si 0.706 3.294 27 H -0.209 1.209 28 H -0.217 1.217 29 H -0.203 1.203 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.118 0.882 39 H 0.124 0.876 40 H 0.192 0.808 41 H 0.112 0.888 42 H 0.104 0.896 43 H 0.089 0.911 44 H 0.099 0.901 45 H 0.106 0.894 46 H 0.094 0.906 47 H 0.107 0.893 48 H 0.100 0.900 49 H 0.078 0.922 50 H 0.100 0.900 51 H 0.198 0.802 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 15.192 -0.285 16.608 22.509 hybrid contribution -0.851 -1.706 0.352 1.939 sum 14.341 -1.991 16.960 22.299 Atomic orbital electron populations 1.21642 0.93257 1.02447 1.01119 1.21958 0.96464 0.95263 0.95762 1.21740 1.00829 0.94536 1.01679 1.21911 0.87848 0.94109 0.96095 1.48366 1.29704 1.44536 1.11892 1.20015 0.83279 0.78697 0.85959 1.90683 1.70643 1.63528 1.16313 1.19831 0.95088 0.98239 0.95839 1.19974 1.04793 0.91459 0.94607 1.22209 1.06696 0.97028 0.92086 1.45253 1.45470 1.09201 1.14398 1.23277 1.04513 0.81816 0.96711 1.69915 1.13551 1.28830 1.05235 1.20135 1.00739 0.97411 0.88687 1.21676 1.02065 0.94361 0.98262 1.21884 0.98423 1.01776 0.95037 1.21929 0.98754 0.82119 0.99073 1.23400 1.00780 1.00904 0.80616 1.21357 0.88129 0.88953 0.94359 0.89980 1.42732 1.50687 1.34260 1.09819 1.19061 1.22070 1.10251 0.86155 0.88917 1.24618 0.99717 0.98319 0.95904 1.69687 1.43019 1.26596 1.18472 0.86685 0.81303 0.79068 0.82347 1.20904 1.21708 1.20294 0.93406 0.91822 0.92165 0.92525 0.92130 0.92787 0.92231 0.92197 0.88224 0.87608 0.80820 0.88828 0.89557 0.91135 0.90069 0.89414 0.90627 0.89329 0.89968 0.92249 0.89988 0.80215 0.93003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 8.16 37.16 0.30 -1.64 16 2 C -0.09 -1.41 0.80 -152.67 -0.12 -1.53 16 3 C -0.13 -1.60 8.44 37.16 0.31 -1.29 16 4 C 0.12 2.07 6.03 -3.06 -0.02 2.06 16 5 N -0.61 -10.73 3.32 -170.38 -0.57 -11.30 16 6 C 0.53 10.08 7.84 -10.99 -0.09 9.99 16 7 O -0.54 -12.02 15.90 5.55 0.09 -11.93 16 8 C -0.05 -0.77 5.27 -29.04 -0.15 -0.92 16 9 C 0.02 0.35 5.87 -82.72 -0.49 -0.13 16 10 C -0.05 -0.66 11.52 -16.84 -0.19 -0.85 16 11 N -0.46 -5.63 3.14 -113.76 -0.36 -5.99 16 12 C 0.20 2.77 7.65 -155.06 -1.19 1.59 16 13 N -0.46 -8.00 10.62 -6.84 -0.07 -8.08 16 14 C -0.03 -0.29 6.33 -27.51 -0.17 -0.47 16 15 C -0.13 -0.82 5.96 -26.45 -0.16 -0.97 16 16 C -0.13 -0.75 5.94 -26.52 -0.16 -0.91 16 17 C 0.10 0.79 6.98 -3.92 -0.03 0.76 16 18 C 0.07 1.12 6.09 -2.41 -0.01 1.11 16 19 C 0.18 3.26 2.96 -65.66 -0.19 3.06 16 20 H 0.08 1.43 7.99 -51.93 -0.41 1.02 16 21 N -0.73 -16.30 4.38 -51.23 -0.22 -16.52 16 22 C -0.25 -6.50 10.44 -15.06 -0.16 -6.65 16 23 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 24 C 0.01 0.30 5.50 -17.43 -0.10 0.21 16 25 N -0.93 -28.30 13.97 55.49 0.78 -27.52 16 26 Si 0.88 21.97 27.74 -169.99 -4.71 17.25 16 27 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 29 H -0.28 -6.80 6.52 56.52 0.37 -6.43 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 1.06 6.34 -51.93 -0.33 0.73 16 33 H 0.06 0.67 7.42 -51.93 -0.39 0.29 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 1.10 7.82 -51.93 -0.41 0.69 16 37 H 0.06 0.97 7.85 -51.93 -0.41 0.56 16 38 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.11 1.52 7.82 -51.93 -0.41 1.12 16 40 H 0.17 1.95 8.06 -52.49 -0.42 1.53 16 41 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 44 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 45 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.08 0.44 8.12 -51.93 -0.42 0.01 16 47 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 48 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.06 0.82 7.69 -51.93 -0.40 0.42 16 50 H 0.08 1.41 7.48 -51.93 -0.39 1.02 16 51 H 0.36 8.36 4.18 -40.82 -0.17 8.19 16 52 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 406.40 15.07 6.12 6.12 Total: -1.00 -36.17 406.40 -10.37 -46.54 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -8.82 Total: 8.02 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -2.61 Total: 3.40 kcal Atomic # 7 Polarization: -68.96 SS G_CDS: -0.44 Total: -69.40 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.09 Total: -11.93 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.71 Total: 17.25 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.17 -10.37 -46.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995845213.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.315 kcal (2) G-P(sol) polarization free energy of solvation -36.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds