Wall clock time and date at job start Wed Apr 1 2020 04:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 110.77901 * 2 1 4 4 C 1.54326 * 110.72263 * 123.23520 * 2 1 3 5 5 N 1.47025 * 107.27302 * 140.55712 * 4 2 1 6 6 C 1.34769 * 125.64902 * 181.02446 * 5 4 2 7 7 O 1.21284 * 120.00321 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00255 * 180.02562 * 6 5 4 9 9 C 1.50693 * 109.47562 * 179.97438 * 8 6 5 10 10 C 1.34856 * 125.96540 * 124.99506 * 9 8 6 11 11 N 1.36129 * 106.75094 * 180.11181 * 10 9 8 12 12 C 1.35614 * 107.39230 * 359.90326 * 11 10 9 13 13 N 1.30088 * 108.57644 * 0.07689 * 12 11 10 14 14 C 1.51047 * 124.03478 * 179.97438 * 12 11 10 15 15 C 1.53402 * 108.20877 * 344.17272 * 14 12 11 16 16 C 1.53147 * 109.23731 * 48.82599 * 15 14 12 17 17 C 1.46471 * 127.92795 * 180.27756 * 11 10 9 18 18 C 1.47427 * 108.69898 * 1.28911 * 5 4 2 19 19 C 1.55130 * 104.72602 * 335.55141 * 18 5 4 20 20 H 1.09000 * 110.90559 * 155.27514 * 19 18 5 21 21 N 1.46502 * 111.22562 * 279.17795 * 19 18 5 22 22 C 1.36938 * 120.00025 * 267.20480 * 21 19 18 23 23 H 1.08000 * 119.99605 * 0.02562 * 22 21 19 24 24 C 1.38808 * 119.99967 * 180.02562 * 22 21 19 25 25 N 1.31617 * 120.00028 * 180.02562 * 24 22 21 26 26 Si 1.86807 * 120.00060 * 359.97438 * 24 22 21 27 27 H 1.48499 * 109.46715 * 90.00245 * 26 24 22 28 28 H 1.48498 * 109.47059 * 209.99991 * 26 24 22 29 29 H 1.48494 * 109.47112 * 330.00298 * 26 24 22 30 30 H 1.09000 * 109.47545 * 298.21384 * 1 2 3 31 31 H 1.09001 * 109.47124 * 58.22073 * 1 2 3 32 32 H 1.09006 * 109.46654 * 178.21480 * 1 2 3 33 33 H 1.09002 * 109.47242 * 181.78792 * 3 2 1 34 34 H 1.09007 * 109.46992 * 301.78112 * 3 2 1 35 35 H 1.09000 * 109.47182 * 61.78066 * 3 2 1 36 36 H 1.08997 * 109.87844 * 21.14276 * 4 2 1 37 37 H 1.08996 * 110.01154 * 260.04897 * 4 2 1 38 38 H 1.09003 * 109.46812 * 60.00152 * 8 6 5 39 39 H 1.09003 * 109.47048 * 300.00179 * 8 6 5 40 40 H 1.07996 * 126.65111 * 0.02562 * 10 9 8 41 41 H 1.09002 * 109.71556 * 224.50068 * 14 12 11 42 42 H 1.08994 * 109.71493 * 103.85252 * 14 12 11 43 43 H 1.08995 * 109.51343 * 288.89481 * 15 14 12 44 44 H 1.09008 * 109.54501 * 168.76970 * 15 14 12 45 45 H 1.08999 * 109.46855 * 170.50397 * 16 15 14 46 46 H 1.08999 * 109.47018 * 50.51497 * 16 15 14 47 47 H 1.09002 * 109.58349 * 42.78990 * 17 11 10 48 48 H 1.09005 * 109.58201 * 282.51621 * 17 11 10 49 49 H 1.08999 * 110.36685 * 94.48741 * 18 5 4 50 50 H 1.09005 * 110.36469 * 216.80139 * 18 5 4 51 51 H 0.96998 * 119.99915 * 87.20244 * 21 19 18 52 52 H 0.97001 * 120.00459 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0760 -0.7911 1.2073 5 7 3.2446 -1.5507 0.7391 6 6 3.9923 -2.3834 1.4898 7 8 3.7193 -2.5563 2.6588 8 6 5.1679 -3.0999 0.8769 9 6 5.8306 -3.9620 1.9202 10 6 6.0665 -5.2860 1.8203 11 7 6.6756 -5.6644 2.9775 12 6 6.7967 -4.5581 3.7524 13 7 6.2886 -3.5460 3.1122 14 6 7.4236 -4.5529 5.1266 15 6 7.5094 -6.0030 5.6197 16 6 8.1258 -6.8739 4.5212 17 6 7.1390 -7.0015 3.3555 18 6 3.4666 -1.2455 -0.6860 19 6 2.0790 -0.7955 -1.2138 20 1 2.1850 -0.1519 -2.0871 21 7 1.2267 -1.9484 -1.5150 22 6 1.2019 -2.4693 -2.7812 23 1 1.8110 -2.0305 -3.5576 24 6 0.3939 -3.5613 -3.0666 25 7 0.3705 -4.0623 -4.2835 26 14 -0.6590 -4.3207 -1.7234 27 1 -1.9877 -3.6579 -1.7020 28 1 -0.8335 -5.7708 -1.9917 29 1 0.0071 -4.1370 -0.4090 30 1 -0.3634 0.4858 0.9055 31 1 -0.3633 0.5412 -0.8736 32 1 -0.3633 -1.0272 -0.0320 33 1 3.1620 1.4058 -0.0321 34 1 1.6956 1.9622 -0.8736 35 1 1.7473 1.9426 0.9055 36 1 1.3130 -1.4757 1.5776 37 1 2.3735 -0.1042 1.9996 38 1 5.8840 -2.3686 0.5022 39 1 4.8231 -3.7256 0.0536 40 1 5.8190 -5.9237 0.9846 41 1 6.8075 -3.9682 5.8097 42 1 8.4237 -4.1230 5.0729 43 1 6.5094 -6.3673 5.8549 44 1 8.1328 -6.0482 6.5128 45 1 8.3443 -7.8637 4.9220 46 1 9.0484 -6.4136 4.1674 47 1 7.6357 -7.4698 2.5057 48 1 6.2881 -7.6099 3.6621 49 1 4.1947 -0.4414 -0.7929 50 1 3.8032 -2.1361 -1.2167 51 1 0.6800 -2.3427 -0.8175 52 1 -0.1944 -4.8252 -4.4832 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995845213.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:06 Heat of formation + Delta-G solvation = 13.293710 kcal Electronic energy + Delta-G solvation = -31270.757121 eV Core-core repulsion = 27270.205462 eV Total energy + Delta-G solvation = -4000.551659 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.28215 -41.28230 -39.29963 -37.50967 -35.76784 -34.64832 -34.18167 -33.02968 -32.71673 -29.91822 -29.73904 -28.83201 -28.04211 -26.86328 -25.41402 -24.75267 -23.15371 -22.98864 -21.65596 -20.55992 -20.13010 -19.77132 -19.34320 -17.92335 -17.77968 -17.29921 -16.81304 -16.56751 -16.30549 -15.85034 -15.58896 -15.18844 -15.09423 -15.00213 -14.93955 -14.68300 -14.55031 -14.49321 -14.29116 -13.82387 -13.69178 -13.48585 -13.40418 -13.13267 -13.08432 -12.91119 -12.80654 -12.68345 -12.60199 -12.27355 -12.07644 -11.96847 -11.92561 -11.88501 -11.82548 -11.57649 -11.32546 -11.02895 -10.91718 -10.73733 -10.42408 -9.68479 -9.19808 -9.18293 -8.01282 -5.31845 1.05211 1.33236 1.36078 1.40220 1.71166 1.85238 1.96797 2.31892 2.45675 3.28692 3.30067 3.40856 3.57375 3.59521 3.70285 3.78122 3.82372 3.91570 4.00748 4.12075 4.13618 4.30953 4.31079 4.33692 4.41988 4.44733 4.50434 4.56151 4.61057 4.70632 4.77459 4.78838 4.82369 4.88237 4.90735 4.94414 4.95899 5.01062 5.07377 5.07982 5.11126 5.25894 5.29341 5.35358 5.37851 5.44926 5.53147 5.76412 5.81831 6.24038 6.31293 6.61099 7.08631 7.20841 7.26038 7.85730 8.03286 9.19994 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012102 B = 0.002947 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.134722 B = 9499.373287 C =10920.718071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.079 4.079 3 C -0.124 4.124 4 C 0.121 3.879 5 N -0.611 5.611 6 C 0.525 3.475 7 O -0.578 6.578 8 C -0.042 4.042 9 C -0.016 4.016 10 C -0.049 4.049 11 N -0.456 5.456 12 C 0.190 3.810 13 N -0.508 5.508 14 C -0.033 4.033 15 C -0.120 4.120 16 C -0.127 4.127 17 C 0.092 3.908 18 C 0.077 3.923 19 C 0.171 3.829 20 H 0.091 0.909 21 N -0.738 5.738 22 C -0.214 4.214 23 H 0.074 0.926 24 C -0.052 4.052 25 N -0.978 5.978 26 Si 0.933 3.067 27 H -0.278 1.278 28 H -0.299 1.299 29 H -0.273 1.273 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.033 0.967 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.037 0.963 37 H 0.068 0.932 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.196 0.804 41 H 0.083 0.917 42 H 0.100 0.900 43 H 0.061 0.939 44 H 0.108 0.892 45 H 0.118 0.882 46 H 0.077 0.923 47 H 0.107 0.893 48 H 0.089 0.911 49 H 0.094 0.906 50 H 0.071 0.929 51 H 0.360 0.640 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.773 -0.493 17.409 24.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.080 4.080 3 C -0.182 4.182 4 C -0.002 4.002 5 N -0.345 5.345 6 C 0.314 3.686 7 O -0.457 6.457 8 C -0.082 4.082 9 C -0.146 4.146 10 C -0.183 4.183 11 N -0.139 5.139 12 C -0.073 4.073 13 N -0.227 5.227 14 C -0.072 4.072 15 C -0.158 4.158 16 C -0.165 4.165 17 C -0.029 4.029 18 C -0.048 4.048 19 C 0.062 3.938 20 H 0.108 0.892 21 N -0.379 5.379 22 C -0.345 4.345 23 H 0.092 0.908 24 C -0.244 4.244 25 N -0.629 5.629 26 Si 0.763 3.237 27 H -0.204 1.204 28 H -0.226 1.226 29 H -0.199 1.199 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.052 0.948 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.055 0.945 37 H 0.087 0.913 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.213 0.787 41 H 0.102 0.898 42 H 0.118 0.882 43 H 0.079 0.921 44 H 0.127 0.873 45 H 0.136 0.864 46 H 0.095 0.905 47 H 0.126 0.874 48 H 0.107 0.893 49 H 0.112 0.888 50 H 0.090 0.910 51 H 0.194 0.806 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 16.718 -0.042 18.153 24.678 hybrid contribution -1.251 -1.691 -0.084 2.106 sum 15.466 -1.733 18.069 23.848 Atomic orbital electron populations 1.21642 0.93287 1.01042 1.02494 1.21916 0.96411 0.96536 0.93173 1.21717 1.01198 0.92172 1.03100 1.21990 0.87199 0.93892 0.97130 1.48483 1.29566 1.44158 1.12269 1.20622 0.83852 0.78484 0.85593 1.90649 1.71934 1.64952 1.18202 1.19820 0.94079 0.98482 0.95828 1.20230 1.06489 0.92781 0.95050 1.22568 1.06010 0.96569 0.93157 1.45548 1.44389 1.10525 1.13455 1.24016 1.03665 0.81754 0.97907 1.69838 1.15467 1.31119 1.06299 1.20345 1.00771 0.99743 0.86329 1.21684 1.02320 0.92211 0.99571 1.21916 0.97532 1.03208 0.93797 1.22359 0.99745 0.79938 1.00811 1.23352 1.00352 1.01584 0.79554 1.21663 0.88349 0.87877 0.95944 0.89159 1.42768 1.51582 1.35429 1.08130 1.19077 1.19480 1.08738 0.87183 0.90776 1.25192 1.01955 0.99732 0.97497 1.69821 1.44912 1.27716 1.20432 0.85749 0.80074 0.77700 0.80168 1.20439 1.22571 1.19900 0.91072 0.91500 0.94836 0.91832 0.90931 0.91219 0.94473 0.91339 0.86679 0.86755 0.78687 0.89805 0.88171 0.92050 0.87341 0.86376 0.90453 0.87445 0.89296 0.88766 0.91013 0.80596 0.93516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.67 8.16 71.98 0.59 -3.08 16 2 C -0.08 -2.23 0.80 -50.99 -0.04 -2.27 16 3 C -0.12 -2.63 8.44 71.98 0.61 -2.02 16 4 C 0.12 3.95 6.03 86.73 0.52 4.47 16 5 N -0.61 -21.03 3.32 -811.35 -2.70 -23.73 16 6 C 0.52 20.00 7.84 87.66 0.69 20.69 16 7 O -0.58 -26.63 15.90 -3.04 -0.05 -26.68 16 8 C -0.04 -1.31 5.27 29.10 0.15 -1.16 16 9 C -0.02 -0.54 5.87 41.40 0.24 -0.30 16 10 C -0.05 -1.33 11.52 83.25 0.96 -0.37 16 11 N -0.46 -10.77 3.14 -513.81 -1.61 -12.39 16 12 C 0.19 5.26 7.65 138.17 1.06 6.32 16 13 N -0.51 -18.19 10.62 -175.55 -1.86 -20.05 16 14 C -0.03 -0.60 6.33 30.09 0.19 -0.41 16 15 C -0.12 -1.28 5.96 30.78 0.18 -1.10 16 16 C -0.13 -1.04 5.94 30.73 0.18 -0.85 16 17 C 0.09 1.20 6.98 86.47 0.60 1.80 16 18 C 0.08 2.36 6.09 86.93 0.53 2.89 16 19 C 0.17 5.80 2.96 46.46 0.14 5.93 16 20 H 0.09 2.96 7.99 -2.39 -0.02 2.94 16 21 N -0.74 -32.34 4.38 -316.01 -1.38 -33.72 16 22 C -0.21 -11.33 10.44 84.03 0.88 -10.45 16 23 H 0.07 4.18 8.06 -2.91 -0.02 4.16 16 24 C -0.05 -2.97 5.50 84.86 0.47 -2.50 16 25 N -0.98 -60.74 13.97 21.65 0.30 -60.44 16 26 Si 0.93 46.23 27.74 68.60 1.90 48.13 16 27 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 28 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 29 H -0.27 -13.14 6.52 99.48 0.65 -12.50 16 30 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.03 1.14 6.34 -2.38 -0.02 1.12 16 33 H 0.06 1.28 7.42 -2.39 -0.02 1.26 16 34 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 35 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.04 1.37 7.82 -2.39 -0.02 1.35 16 37 H 0.07 2.12 7.85 -2.39 -0.02 2.10 16 38 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 39 H 0.11 3.29 7.82 -2.39 -0.02 3.27 16 40 H 0.20 4.19 8.06 -2.91 -0.02 4.17 16 41 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.06 0.78 8.12 -2.39 -0.02 0.76 16 44 H 0.11 0.60 8.14 -2.38 -0.02 0.58 16 45 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 46 H 0.08 0.65 8.12 -2.39 -0.02 0.63 16 47 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 49 H 0.09 2.31 7.69 -2.39 -0.02 2.29 16 50 H 0.07 2.39 7.48 -2.38 -0.02 2.37 16 51 H 0.36 16.42 4.18 -92.71 -0.39 16.03 16 52 H 0.26 15.35 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -81.54 406.40 3.01 -78.53 By element: Atomic # 1 Polarization: 32.30 SS G_CDS: 0.46 Total: 32.76 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: 7.95 Total: 17.58 kcal Atomic # 7 Polarization: -143.08 SS G_CDS: -7.25 Total: -150.33 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.05 Total: -26.68 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.90 Total: 48.13 kcal Total: -81.54 3.01 -78.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995845213.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.827 kcal (2) G-P(sol) polarization free energy of solvation -81.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds