Wall clock time and date at job start Wed Apr 1 2020 04:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 110.88804 * 2 1 4 4 C 1.55133 * 111.19054 * 236.06724 * 2 1 3 5 5 N 1.47420 * 104.72416 * 279.19398 * 4 2 1 6 6 C 1.34777 * 125.65157 * 155.81936 * 5 4 2 7 7 O 1.21576 * 119.99495 * 359.71265 * 6 5 4 8 8 C 1.47703 * 120.00387 * 179.71250 * 6 5 4 9 9 C 1.41505 * 126.52166 * 180.29539 * 8 6 5 10 10 C 1.35362 * 105.50435 * 180.13171 * 9 8 6 11 11 N 1.35039 * 107.22755 * 359.60377 * 10 9 8 12 12 C 1.46501 * 124.88312 * 180.29978 * 11 10 9 13 13 C 1.54271 * 110.03405 * 32.16595 * 12 11 10 14 14 C 1.54884 * 104.19761 * 217.10435 * 13 12 11 15 15 C 1.54888 * 102.74790 * 37.94368 * 14 13 12 16 16 C 1.53876 * 110.03334 * 275.00095 * 12 11 10 17 17 N 1.28462 * 110.23188 * 0.26001 * 11 10 9 18 18 C 1.47027 * 108.70161 * 335.55045 * 5 4 2 19 19 C 1.54324 * 107.27012 * 1.28976 * 18 5 4 20 20 H 1.08997 * 110.71621 * 140.73041 * 19 18 5 21 21 N 1.46500 * 110.72155 * 263.82826 * 19 18 5 22 22 C 1.36932 * 120.00104 * 273.55145 * 21 19 18 23 23 H 1.07999 * 120.00113 * 359.97438 * 22 21 19 24 24 C 1.38812 * 120.00414 * 179.97438 * 22 21 19 25 25 N 1.31621 * 120.00441 * 179.97438 * 24 22 21 26 26 Si 1.86807 * 119.99648 * 359.97438 * 24 22 21 27 27 H 1.48494 * 109.47095 * 89.99977 * 26 24 22 28 28 H 1.48503 * 109.46937 * 209.99922 * 26 24 22 29 29 H 1.48505 * 109.46965 * 329.99712 * 26 24 22 30 30 H 1.08999 * 109.46692 * 296.11854 * 1 2 3 31 31 H 1.08999 * 109.47334 * 56.11832 * 1 2 3 32 32 H 1.08999 * 109.46918 * 176.12165 * 1 2 3 33 33 H 1.08993 * 109.46903 * 183.88320 * 3 2 1 34 34 H 1.09000 * 109.46824 * 303.88042 * 3 2 1 35 35 H 1.09001 * 109.46979 * 63.87853 * 3 2 1 36 36 H 1.09001 * 110.49563 * 160.34369 * 4 2 1 37 37 H 1.09003 * 110.34434 * 37.95625 * 4 2 1 38 38 H 1.07997 * 127.24463 * 0.03870 * 9 8 6 39 39 H 1.08002 * 126.38846 * 179.87126 * 10 9 8 40 40 H 1.09000 * 110.01885 * 153.60767 * 12 11 10 41 41 H 1.09003 * 110.48553 * 335.78899 * 13 12 11 42 42 H 1.08999 * 110.48539 * 98.42531 * 13 12 11 43 43 H 1.09000 * 110.75703 * 279.62872 * 14 13 12 44 44 H 1.08996 * 110.75783 * 156.25806 * 14 13 12 45 45 H 1.09001 * 110.48656 * 203.38126 * 15 14 13 46 46 H 1.08995 * 110.49126 * 80.73333 * 15 14 13 47 47 H 1.08996 * 110.03026 * 238.56991 * 16 12 11 48 48 H 1.09004 * 110.02946 * 0.02562 * 16 12 11 49 49 H 1.08997 * 109.88081 * 120.70551 * 18 5 4 50 50 H 1.08995 * 109.87936 * 241.71918 * 18 5 4 51 51 H 0.97004 * 119.99812 * 93.54027 * 21 19 18 52 52 H 0.97001 * 120.00096 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 6 2.0908 -0.8074 -1.2001 5 7 2.0138 -2.2162 -0.7726 6 6 1.9470 -3.2835 -1.5929 7 8 1.9418 -3.1244 -2.7982 8 6 1.8801 -4.6464 -1.0276 9 6 1.8125 -5.8578 -1.7559 10 6 1.7648 -6.8382 -0.8238 11 7 1.8110 -6.2417 0.3869 12 6 1.7889 -6.9478 1.6702 13 6 2.4874 -8.3165 1.5325 14 6 1.6516 -9.2616 2.4309 15 6 0.2029 -8.7693 2.1903 16 6 0.3364 -7.2358 2.0885 17 7 1.8780 -4.9660 0.2512 18 6 2.0285 -2.2644 0.6968 19 6 2.0862 -0.8075 1.2025 20 1 1.4548 -0.6793 2.0817 21 7 3.4667 -0.4150 1.4963 22 6 4.0067 -0.6796 2.7265 23 1 3.4147 -1.1772 3.4804 24 6 5.3149 -0.3082 3.0048 25 7 5.8338 -0.5620 4.1875 26 14 6.3392 0.5518 1.7006 27 1 6.1594 2.0211 1.8193 28 1 7.7719 0.2113 1.8922 29 1 5.9004 0.1066 0.3535 30 1 -0.3633 0.4524 0.9227 31 1 -0.3634 0.5729 -0.8531 32 1 -0.3633 -1.0253 -0.0695 33 1 3.1629 1.4033 -0.0696 34 1 1.6698 1.9731 -0.8532 35 1 1.7823 1.9302 0.9227 36 1 3.1252 -0.5271 -1.3987 37 1 1.4764 -0.6457 -2.0858 38 1 1.7999 -5.9752 -2.8294 39 1 1.7057 -7.8999 -1.0130 40 1 2.2858 -6.3495 2.4340 41 1 2.4632 -8.6545 0.4965 42 1 3.5148 -8.2583 1.8918 43 1 1.9301 -9.1454 3.4783 44 1 1.7653 -10.2978 2.1126 45 1 -0.4369 -9.0415 3.0298 46 1 -0.1904 -9.1804 1.2607 47 1 0.1286 -6.7779 3.0556 48 1 -0.3521 -6.8505 1.3364 49 1 1.1219 -2.7476 1.0609 50 1 2.9049 -2.8136 1.0409 51 1 3.9984 0.0321 0.8192 52 1 6.7481 -0.3028 4.3818 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995853046.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:09 Heat of formation + Delta-G solvation = 61.285250 kcal Electronic energy + Delta-G solvation = -31811.760395 eV Core-core repulsion = 27813.289805 eV Total energy + Delta-G solvation = -3998.470590 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.67584 -39.85350 -38.39646 -37.66472 -33.99235 -33.25917 -32.37340 -31.03940 -30.72899 -29.18962 -28.26348 -28.16111 -26.84859 -26.23293 -23.80265 -22.81991 -22.29151 -21.23767 -20.90377 -19.84005 -19.12385 -18.87737 -17.60089 -17.52180 -16.61639 -16.22598 -15.74959 -15.38010 -15.06751 -14.79729 -14.56048 -14.39129 -13.97648 -13.76516 -13.55008 -13.41734 -13.05004 -12.80406 -12.72932 -12.47670 -12.43112 -12.09348 -12.03180 -11.94146 -11.66079 -11.61399 -11.59495 -11.57617 -11.23972 -11.19709 -11.02738 -10.96743 -10.73746 -10.55667 -10.43058 -10.24354 -9.90168 -9.77413 -9.57086 -9.16608 -8.99090 -8.96731 -8.17104 -7.30844 -5.79992 -3.15556 1.77975 2.20130 2.40531 3.36067 3.36623 3.39865 3.44623 3.69955 3.93054 4.08906 4.42925 4.54870 4.57112 4.69190 4.74832 4.87269 4.95319 4.96733 5.03225 5.05813 5.13211 5.15114 5.31623 5.36915 5.43931 5.45794 5.54467 5.61187 5.61905 5.64616 5.73968 5.76775 5.77804 5.80408 5.85628 5.89175 5.90718 6.06169 6.15783 6.16200 6.24845 6.31656 6.36022 6.45387 6.60268 6.67413 6.75549 6.81243 6.90427 7.88023 7.95822 8.02872 8.39106 8.51022 9.17006 9.89697 10.09015 11.38099 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009687 B = 0.003624 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2889.752930 B = 7723.561526 C = 9217.885918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.092 4.092 3 C -0.127 4.127 4 C 0.120 3.880 5 N -0.594 5.594 6 C 0.613 3.387 7 O -0.551 6.551 8 C -0.014 4.014 9 C -0.181 4.181 10 C -0.024 4.024 11 N -0.276 5.276 12 C 0.142 3.858 13 C -0.136 4.136 14 C -0.122 4.122 15 C -0.124 4.124 16 C -0.135 4.135 17 N -0.242 5.242 18 C 0.087 3.913 19 C 0.182 3.818 20 H 0.077 0.923 21 N -0.738 5.738 22 C -0.243 4.243 23 H 0.092 0.908 24 C 0.009 3.991 25 N -0.932 5.932 26 Si 0.877 3.123 27 H -0.282 1.282 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.158 0.842 39 H 0.177 0.823 40 H 0.116 0.884 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.073 0.927 46 H 0.068 0.932 47 H 0.084 0.916 48 H 0.075 0.925 49 H 0.061 0.939 50 H 0.082 0.918 51 H 0.363 0.637 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.970 -14.901 -6.300 20.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.093 4.093 3 C -0.184 4.184 4 C -0.003 4.003 5 N -0.326 5.326 6 C 0.401 3.599 7 O -0.429 6.429 8 C -0.174 4.174 9 C -0.210 4.210 10 C -0.167 4.167 11 N -0.064 5.064 12 C 0.041 3.959 13 C -0.175 4.175 14 C -0.160 4.160 15 C -0.162 4.162 16 C -0.174 4.174 17 N -0.078 5.078 18 C -0.039 4.039 19 C 0.071 3.929 20 H 0.095 0.905 21 N -0.380 5.380 22 C -0.373 4.373 23 H 0.110 0.890 24 C -0.186 4.186 25 N -0.580 5.580 26 Si 0.708 3.292 27 H -0.209 1.209 28 H -0.217 1.217 29 H -0.203 1.203 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.176 0.824 39 H 0.194 0.806 40 H 0.134 0.866 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.087 0.913 47 H 0.103 0.897 48 H 0.094 0.906 49 H 0.079 0.921 50 H 0.101 0.899 51 H 0.197 0.803 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.868 -14.516 -5.535 20.173 hybrid contribution 1.020 0.077 -1.578 1.880 sum -11.848 -14.439 -7.113 19.987 Atomic orbital electron populations 1.21657 0.93527 1.01718 1.01683 1.22086 0.95763 0.95776 0.95720 1.21595 1.01164 0.94054 1.01629 1.22334 1.00796 0.79933 0.97205 1.48238 1.70445 1.05566 1.08344 1.16532 0.76733 0.81682 0.85001 1.90745 1.52809 1.85486 1.13828 1.21865 1.10811 0.95048 0.89632 1.21698 1.08618 0.90137 1.00508 1.22643 1.09173 1.00165 0.84679 1.45802 1.50253 1.03499 1.06844 1.22358 0.98194 0.93343 0.82022 1.22837 1.00169 0.92545 1.01903 1.22482 0.94437 0.98944 1.00107 1.22381 0.97151 0.94415 1.02234 1.22587 0.94586 0.97119 1.03060 1.73807 1.17591 0.96028 1.20336 1.23164 1.02087 1.00962 0.77673 1.21251 0.87442 0.89649 0.94553 0.90483 1.42813 1.09653 1.71209 1.14343 1.19043 0.96286 1.32648 0.89298 0.89034 1.24616 0.96866 1.00888 0.96277 1.69690 1.15211 1.52401 1.20660 0.86663 0.80455 0.80063 0.82066 1.20889 1.21731 1.20331 0.92128 0.92720 0.92673 0.92308 0.93160 0.91602 0.91571 0.90813 0.82392 0.80638 0.86644 0.89979 0.89823 0.90576 0.90643 0.90854 0.91304 0.89739 0.90648 0.92065 0.89928 0.80270 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 8.59 37.16 0.32 -1.36 16 2 C -0.09 -1.43 0.83 -152.24 -0.13 -1.56 16 3 C -0.13 -1.91 8.22 37.16 0.31 -1.60 16 4 C 0.12 2.03 5.82 -2.41 -0.01 2.02 16 5 N -0.59 -10.89 3.31 -171.54 -0.57 -11.46 16 6 C 0.61 11.73 7.86 -12.39 -0.10 11.63 16 7 O -0.55 -11.56 17.18 5.30 0.09 -11.46 16 8 C -0.01 -0.23 6.98 -82.76 -0.58 -0.81 16 9 C -0.18 -2.55 10.81 -39.36 -0.43 -2.97 16 10 C -0.02 -0.28 10.39 -17.17 -0.18 -0.45 16 11 N -0.28 -3.48 3.14 -53.74 -0.17 -3.65 16 12 C 0.14 1.36 3.88 -66.81 -0.26 1.10 16 13 C -0.14 -0.96 6.35 -25.07 -0.16 -1.12 16 14 C -0.12 -0.66 6.91 -24.74 -0.17 -0.83 16 15 C -0.12 -0.71 6.83 -25.07 -0.17 -0.88 16 16 C -0.14 -1.07 6.60 -25.61 -0.17 -1.24 16 17 N -0.24 -3.92 9.50 33.42 0.32 -3.61 16 18 C 0.09 1.60 4.96 -3.06 -0.02 1.59 16 19 C 0.18 3.42 2.86 -66.10 -0.19 3.23 16 20 H 0.08 1.44 8.03 -51.93 -0.42 1.03 16 21 N -0.74 -16.83 4.42 -51.66 -0.23 -17.06 16 22 C -0.24 -6.60 10.46 -15.06 -0.16 -6.76 16 23 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 24 C 0.01 0.27 5.50 -17.43 -0.10 0.18 16 25 N -0.93 -28.74 13.97 55.49 0.78 -27.96 16 26 Si 0.88 22.05 27.73 -169.99 -4.71 17.34 16 27 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 29 H -0.28 -6.71 6.52 56.52 0.37 -6.34 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.75 7.91 -51.93 -0.41 0.34 16 33 H 0.06 0.98 6.38 -51.93 -0.33 0.65 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.07 1.19 7.99 -51.93 -0.41 0.78 16 37 H 0.07 1.19 7.95 -51.93 -0.41 0.77 16 38 H 0.16 2.00 8.06 -52.49 -0.42 1.58 16 39 H 0.18 1.28 6.80 -52.49 -0.36 0.93 16 40 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.08 0.53 5.83 -51.93 -0.30 0.22 16 42 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 48 H 0.07 0.70 7.92 -51.93 -0.41 0.29 16 49 H 0.06 1.07 7.66 -51.93 -0.40 0.67 16 50 H 0.08 1.78 7.67 -51.93 -0.40 1.38 16 51 H 0.36 8.33 3.96 -40.82 -0.16 8.17 16 52 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 405.91 15.07 6.12 6.12 Total: -1.00 -33.68 405.91 -9.24 -42.92 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -8.68 Total: 8.69 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -2.18 Total: 0.14 kcal Atomic # 7 Polarization: -63.86 SS G_CDS: 0.13 Total: -63.74 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.09 Total: -11.46 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.71 Total: 17.34 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.68 -9.24 -42.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995853046.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.202 kcal (2) G-P(sol) polarization free energy of solvation -33.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds