Wall clock time and date at job start Wed Apr 1 2020 04:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 110.88804 * 2 1 4 4 C 1.55133 * 111.19054 * 236.06724 * 2 1 3 5 5 N 1.47420 * 104.72416 * 279.19398 * 4 2 1 6 6 C 1.34777 * 125.65157 * 155.81936 * 5 4 2 7 7 O 1.21576 * 119.99495 * 359.71265 * 6 5 4 8 8 C 1.47703 * 120.00387 * 179.71250 * 6 5 4 9 9 C 1.41505 * 126.52166 * 180.29539 * 8 6 5 10 10 C 1.35362 * 105.50435 * 180.13171 * 9 8 6 11 11 N 1.35039 * 107.22755 * 359.60377 * 10 9 8 12 12 C 1.46501 * 124.88312 * 180.29978 * 11 10 9 13 13 C 1.54271 * 110.03405 * 32.16595 * 12 11 10 14 14 C 1.54884 * 104.19761 * 217.10435 * 13 12 11 15 15 C 1.54888 * 102.74790 * 37.94368 * 14 13 12 16 16 C 1.53876 * 110.03334 * 275.00095 * 12 11 10 17 17 N 1.28462 * 110.23188 * 0.26001 * 11 10 9 18 18 C 1.47027 * 108.70161 * 335.55045 * 5 4 2 19 19 C 1.54324 * 107.27012 * 1.28976 * 18 5 4 20 20 H 1.08997 * 110.71621 * 140.73041 * 19 18 5 21 21 N 1.46500 * 110.72155 * 263.82826 * 19 18 5 22 22 C 1.36932 * 120.00104 * 273.55145 * 21 19 18 23 23 H 1.07999 * 120.00113 * 359.97438 * 22 21 19 24 24 C 1.38812 * 120.00414 * 179.97438 * 22 21 19 25 25 N 1.31621 * 120.00441 * 179.97438 * 24 22 21 26 26 Si 1.86807 * 119.99648 * 359.97438 * 24 22 21 27 27 H 1.48494 * 109.47095 * 89.99977 * 26 24 22 28 28 H 1.48503 * 109.46937 * 209.99922 * 26 24 22 29 29 H 1.48505 * 109.46965 * 329.99712 * 26 24 22 30 30 H 1.08999 * 109.46692 * 296.11854 * 1 2 3 31 31 H 1.08999 * 109.47334 * 56.11832 * 1 2 3 32 32 H 1.08999 * 109.46918 * 176.12165 * 1 2 3 33 33 H 1.08993 * 109.46903 * 183.88320 * 3 2 1 34 34 H 1.09000 * 109.46824 * 303.88042 * 3 2 1 35 35 H 1.09001 * 109.46979 * 63.87853 * 3 2 1 36 36 H 1.09001 * 110.49563 * 160.34369 * 4 2 1 37 37 H 1.09003 * 110.34434 * 37.95625 * 4 2 1 38 38 H 1.07997 * 127.24463 * 0.03870 * 9 8 6 39 39 H 1.08002 * 126.38846 * 179.87126 * 10 9 8 40 40 H 1.09000 * 110.01885 * 153.60767 * 12 11 10 41 41 H 1.09003 * 110.48553 * 335.78899 * 13 12 11 42 42 H 1.08999 * 110.48539 * 98.42531 * 13 12 11 43 43 H 1.09000 * 110.75703 * 279.62872 * 14 13 12 44 44 H 1.08996 * 110.75783 * 156.25806 * 14 13 12 45 45 H 1.09001 * 110.48656 * 203.38126 * 15 14 13 46 46 H 1.08995 * 110.49126 * 80.73333 * 15 14 13 47 47 H 1.08996 * 110.03026 * 238.56991 * 16 12 11 48 48 H 1.09004 * 110.02946 * 0.02562 * 16 12 11 49 49 H 1.08997 * 109.88081 * 120.70551 * 18 5 4 50 50 H 1.08995 * 109.87936 * 241.71918 * 18 5 4 51 51 H 0.97004 * 119.99812 * 93.54027 * 21 19 18 52 52 H 0.97001 * 120.00096 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 6 2.0908 -0.8074 -1.2001 5 7 2.0138 -2.2162 -0.7726 6 6 1.9470 -3.2835 -1.5929 7 8 1.9418 -3.1244 -2.7982 8 6 1.8801 -4.6464 -1.0276 9 6 1.8125 -5.8578 -1.7559 10 6 1.7648 -6.8382 -0.8238 11 7 1.8110 -6.2417 0.3869 12 6 1.7889 -6.9478 1.6702 13 6 2.4874 -8.3165 1.5325 14 6 1.6516 -9.2616 2.4309 15 6 0.2029 -8.7693 2.1903 16 6 0.3364 -7.2358 2.0885 17 7 1.8780 -4.9660 0.2512 18 6 2.0285 -2.2644 0.6968 19 6 2.0862 -0.8075 1.2025 20 1 1.4548 -0.6793 2.0817 21 7 3.4667 -0.4150 1.4963 22 6 4.0067 -0.6796 2.7265 23 1 3.4147 -1.1772 3.4804 24 6 5.3149 -0.3082 3.0048 25 7 5.8338 -0.5620 4.1875 26 14 6.3392 0.5518 1.7006 27 1 6.1594 2.0211 1.8193 28 1 7.7719 0.2113 1.8922 29 1 5.9004 0.1066 0.3535 30 1 -0.3633 0.4524 0.9227 31 1 -0.3634 0.5729 -0.8531 32 1 -0.3633 -1.0253 -0.0695 33 1 3.1629 1.4033 -0.0696 34 1 1.6698 1.9731 -0.8532 35 1 1.7823 1.9302 0.9227 36 1 3.1252 -0.5271 -1.3987 37 1 1.4764 -0.6457 -2.0858 38 1 1.7999 -5.9752 -2.8294 39 1 1.7057 -7.8999 -1.0130 40 1 2.2858 -6.3495 2.4340 41 1 2.4632 -8.6545 0.4965 42 1 3.5148 -8.2583 1.8918 43 1 1.9301 -9.1454 3.4783 44 1 1.7653 -10.2978 2.1126 45 1 -0.4369 -9.0415 3.0298 46 1 -0.1904 -9.1804 1.2607 47 1 0.1286 -6.7779 3.0556 48 1 -0.3521 -6.8505 1.3364 49 1 1.1219 -2.7476 1.0609 50 1 2.9049 -2.8136 1.0409 51 1 3.9984 0.0321 0.8192 52 1 6.7481 -0.3028 4.3818 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995853046.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:08 Heat of formation + Delta-G solvation = 40.914663 kcal Electronic energy + Delta-G solvation = -31812.643730 eV Core-core repulsion = 27813.289805 eV Total energy + Delta-G solvation = -3999.353925 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.74107 -41.29893 -39.38633 -38.83800 -35.86563 -34.71320 -33.33556 -33.04109 -31.78299 -29.77970 -29.76904 -29.16764 -28.12107 -27.43122 -25.58710 -24.13210 -23.23740 -22.76776 -21.48918 -20.71815 -20.65208 -20.23588 -19.40424 -18.53262 -17.84258 -17.43450 -16.95515 -16.71272 -16.38948 -16.08480 -15.97077 -15.56809 -15.32313 -14.92558 -14.71166 -14.55474 -14.40294 -14.30657 -13.88217 -13.85131 -13.65705 -13.48257 -13.18772 -13.10520 -12.91771 -12.82426 -12.77106 -12.66240 -12.28182 -12.13864 -12.05342 -11.99410 -11.95047 -11.86369 -11.72965 -11.62337 -11.49847 -11.37798 -11.23705 -10.98512 -10.26019 -10.08581 -9.66682 -9.33372 -8.03072 -5.35406 0.52271 1.17364 1.34361 1.36208 1.41960 1.45031 2.00103 2.32748 2.45543 3.16315 3.26492 3.32975 3.48066 3.50708 3.62235 3.77461 3.80266 3.87140 3.95077 4.06109 4.24297 4.29668 4.36561 4.41091 4.43068 4.47531 4.56091 4.57334 4.63744 4.71400 4.73850 4.74757 4.82885 4.86052 4.93159 4.97479 4.99060 5.03920 5.05005 5.06604 5.18071 5.20541 5.22165 5.27744 5.34799 5.40568 5.41500 5.50532 5.77796 5.91436 6.20999 6.41342 6.82821 7.06037 7.11485 7.81583 8.00373 9.18244 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009687 B = 0.003624 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2889.752930 B = 7723.561526 C = 9217.885918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.077 4.077 3 C -0.126 4.126 4 C 0.116 3.884 5 N -0.597 5.597 6 C 0.607 3.393 7 O -0.576 6.576 8 C -0.048 4.048 9 C -0.197 4.197 10 C 0.000 4.000 11 N -0.270 5.270 12 C 0.130 3.870 13 C -0.132 4.132 14 C -0.115 4.115 15 C -0.117 4.117 16 C -0.131 4.131 17 N -0.273 5.273 18 C 0.107 3.893 19 C 0.174 3.826 20 H 0.079 0.921 21 N -0.738 5.738 22 C -0.221 4.221 23 H 0.064 0.936 24 C -0.054 4.054 25 N -0.980 5.980 26 Si 0.939 3.061 27 H -0.271 1.271 28 H -0.299 1.299 29 H -0.265 1.265 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.047 0.953 33 H 0.039 0.961 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.086 0.914 38 H 0.168 0.832 39 H 0.223 0.777 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.095 0.905 45 H 0.083 0.917 46 H 0.079 0.921 47 H 0.081 0.919 48 H 0.062 0.938 49 H 0.070 0.930 50 H 0.047 0.953 51 H 0.365 0.635 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.482 -16.128 -7.727 23.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.079 4.079 3 C -0.183 4.183 4 C -0.006 4.006 5 N -0.328 5.328 6 C 0.396 3.604 7 O -0.456 6.456 8 C -0.206 4.206 9 C -0.226 4.226 10 C -0.142 4.142 11 N -0.059 5.059 12 C 0.030 3.970 13 C -0.170 4.170 14 C -0.153 4.153 15 C -0.154 4.154 16 C -0.169 4.169 17 N -0.109 5.109 18 C -0.019 4.019 19 C 0.064 3.936 20 H 0.097 0.903 21 N -0.381 5.381 22 C -0.352 4.352 23 H 0.082 0.918 24 C -0.246 4.246 25 N -0.630 5.630 26 Si 0.767 3.233 27 H -0.197 1.197 28 H -0.226 1.226 29 H -0.190 1.190 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.105 0.895 38 H 0.185 0.815 39 H 0.240 0.760 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.113 0.887 45 H 0.102 0.898 46 H 0.097 0.903 47 H 0.100 0.900 48 H 0.081 0.919 49 H 0.088 0.912 50 H 0.066 0.934 51 H 0.199 0.801 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.429 -15.733 -6.984 22.461 hybrid contribution 1.402 0.340 -1.073 1.798 sum -13.027 -15.392 -8.057 21.715 Atomic orbital electron populations 1.21632 0.91064 1.01904 1.03372 1.22058 0.97489 0.95510 0.92803 1.21602 1.00020 0.93658 1.03049 1.22450 1.00445 0.79435 0.98307 1.48304 1.70280 1.06203 1.07984 1.16908 0.76075 0.82591 0.84824 1.90706 1.54124 1.86074 1.14689 1.21838 1.13175 0.94994 0.90639 1.21949 1.09486 0.89629 1.01496 1.23253 1.06115 1.01692 0.83180 1.46166 1.48588 1.02705 1.08395 1.22700 0.99701 0.94094 0.80467 1.22872 0.99930 0.91020 1.03166 1.22480 0.93565 0.99427 0.99786 1.22372 0.97656 0.92157 1.03262 1.22556 0.92862 0.99170 1.02358 1.73733 1.18817 0.98140 1.20232 1.22787 1.00859 1.00127 0.78089 1.21472 0.85510 0.90418 0.96209 0.90330 1.42781 1.11284 1.71222 1.12819 1.19009 0.95831 1.30294 0.90096 0.91765 1.25288 0.98279 1.02741 0.98258 1.69849 1.15493 1.54783 1.22915 0.85660 0.78144 0.79464 0.80019 1.19664 1.22601 1.19039 0.90949 0.90439 0.93362 0.94195 0.90066 0.91603 0.92880 0.89532 0.81453 0.76049 0.88669 0.88631 0.90255 0.90593 0.88680 0.89830 0.90253 0.89989 0.91937 0.91188 0.93422 0.80086 0.93458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.91 8.59 71.98 0.62 -2.29 16 2 C -0.08 -2.30 0.83 -50.71 -0.04 -2.34 16 3 C -0.13 -3.51 8.22 71.98 0.59 -2.92 16 4 C 0.12 3.84 5.82 86.93 0.51 4.35 16 5 N -0.60 -22.10 3.31 -814.90 -2.70 -24.80 16 6 C 0.61 23.65 7.86 86.74 0.68 24.33 16 7 O -0.58 -24.43 17.18 -3.95 -0.07 -24.50 16 8 C -0.05 -1.68 6.98 42.45 0.30 -1.38 16 9 C -0.20 -5.39 10.81 22.41 0.24 -5.15 16 10 C 0.00 0.00 10.39 83.54 0.87 0.87 16 11 N -0.27 -6.67 3.14 -323.93 -1.02 -7.68 16 12 C 0.13 2.42 3.88 45.72 0.18 2.60 16 13 C -0.13 -1.57 6.35 31.67 0.20 -1.37 16 14 C -0.11 -0.91 6.91 31.88 0.22 -0.69 16 15 C -0.12 -1.02 6.83 31.67 0.22 -0.81 16 16 C -0.13 -1.94 6.60 31.32 0.21 -1.73 16 17 N -0.27 -9.02 9.50 -48.18 -0.46 -9.48 16 18 C 0.11 4.06 4.96 86.73 0.43 4.49 16 19 C 0.17 6.51 2.86 46.18 0.13 6.65 16 20 H 0.08 2.95 8.03 -2.39 -0.02 2.93 16 21 N -0.74 -33.96 4.42 -317.34 -1.40 -35.36 16 22 C -0.22 -12.34 10.46 84.03 0.88 -11.46 16 23 H 0.06 3.88 8.06 -2.91 -0.02 3.86 16 24 C -0.05 -3.16 5.50 84.86 0.47 -2.69 16 25 N -0.98 -62.29 13.97 21.65 0.30 -61.98 16 26 Si 0.94 46.19 27.73 68.60 1.90 48.10 16 27 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 28 H -0.30 -15.05 7.11 99.48 0.71 -14.34 16 29 H -0.26 -12.33 6.52 99.48 0.65 -11.68 16 30 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.05 1.22 7.91 -2.39 -0.02 1.21 16 33 H 0.04 1.27 6.38 -2.39 -0.02 1.25 16 34 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.05 1.90 7.99 -2.39 -0.02 1.88 16 37 H 0.09 2.66 7.95 -2.39 -0.02 2.64 16 38 H 0.17 4.10 8.06 -2.91 -0.02 4.08 16 39 H 0.22 2.29 6.80 -2.91 -0.02 2.27 16 40 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.10 0.88 5.83 -2.39 -0.01 0.87 16 42 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 45 H 0.08 0.60 8.14 -2.39 -0.02 0.59 16 46 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.06 1.10 7.92 -2.39 -0.02 1.08 16 49 H 0.07 2.52 7.66 -2.39 -0.02 2.50 16 50 H 0.05 2.15 7.67 -2.39 -0.02 2.13 16 51 H 0.36 16.61 3.96 -92.71 -0.37 16.24 16 52 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -76.07 405.91 3.74 -72.33 By element: Atomic # 1 Polarization: 32.45 SS G_CDS: 0.48 Total: 32.94 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: 6.69 Total: 10.44 kcal Atomic # 7 Polarization: -134.04 SS G_CDS: -5.27 Total: -139.31 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.07 Total: -24.50 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.90 Total: 48.10 kcal Total: -76.07 3.74 -72.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995853046.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.247 kcal (2) G-P(sol) polarization free energy of solvation -76.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds