Wall clock time and date at job start Wed Apr 1 2020 04:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 110.30338 * 2 1 4 4 C 1.54385 * 110.34193 * 237.82870 * 2 1 3 5 5 N 1.48315 * 104.53566 * 217.33086 * 4 2 1 6 6 C 1.34776 * 127.77208 * 219.51260 * 5 4 2 7 7 O 1.21630 * 119.99782 * 6.54861 * 6 5 4 8 8 C 1.47159 * 120.00329 * 186.55141 * 6 5 4 9 9 C 1.38411 * 126.88064 * 7.63201 * 8 6 5 10 10 C 1.39674 * 105.35671 * 180.02562 * 9 8 6 11 11 N 1.30864 * 107.86516 * 0.02562 * 10 9 8 12 12 N 1.28449 * 110.92331 * 359.71655 * 11 10 9 13 13 C 1.46502 * 125.19099 * 180.28313 * 12 11 10 14 14 C 1.54273 * 110.03325 * 63.59212 * 13 12 11 15 15 C 1.54966 * 104.15681 * 217.13881 * 14 13 12 16 16 C 1.54886 * 102.78134 * 37.88905 * 15 14 13 17 17 C 1.53873 * 110.03025 * 306.37676 * 13 12 11 18 18 C 1.48146 * 104.39140 * 39.46377 * 5 4 2 19 19 C 1.54279 * 110.34627 * 122.17239 * 2 1 3 20 20 H 1.08995 * 110.34969 * 237.74091 * 19 2 1 21 21 N 1.46501 * 110.34385 * 0.02562 * 19 2 1 22 22 C 1.36935 * 119.99991 * 270.69367 * 21 19 2 23 23 H 1.08003 * 120.00086 * 4.86280 * 22 21 19 24 24 C 1.38811 * 119.99785 * 184.85722 * 22 21 19 25 25 N 1.31618 * 120.00423 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 119.99953 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46954 * 60.00361 * 26 24 22 28 28 H 1.48498 * 109.47438 * 180.02562 * 26 24 22 29 29 H 1.48496 * 109.47181 * 300.00558 * 26 24 22 30 30 H 1.09001 * 109.47157 * 59.29879 * 1 2 3 31 31 H 1.08994 * 109.46678 * 179.30284 * 1 2 3 32 32 H 1.09002 * 109.46751 * 299.29602 * 1 2 3 33 33 H 1.09009 * 109.47561 * 60.70235 * 3 2 1 34 34 H 1.09005 * 109.47467 * 180.70218 * 3 2 1 35 35 H 1.09002 * 109.47598 * 300.70640 * 3 2 1 36 36 H 1.08996 * 110.40782 * 336.04220 * 4 2 1 37 37 H 1.08996 * 110.40769 * 98.47639 * 4 2 1 38 38 H 1.07995 * 127.32099 * 359.97438 * 9 8 6 39 39 H 1.08002 * 126.06831 * 179.97438 * 10 9 8 40 40 H 1.08994 * 110.01728 * 184.98345 * 13 12 11 41 41 H 1.09000 * 110.48421 * 335.78548 * 14 13 12 42 42 H 1.09000 * 110.48243 * 98.42663 * 14 13 12 43 43 H 1.09002 * 110.72018 * 279.57045 * 15 14 13 44 44 H 1.09004 * 110.75948 * 156.22813 * 15 14 13 45 45 H 1.08994 * 110.48442 * 203.40465 * 16 15 14 46 46 H 1.08999 * 110.59718 * 80.81377 * 16 15 14 47 47 H 1.09005 * 110.03241 * 238.56900 * 17 13 12 48 48 H 1.09003 * 110.03426 * 359.95102 * 17 13 12 49 49 H 1.08994 * 110.40687 * 201.69080 * 18 5 4 50 50 H 1.08996 * 110.51272 * 79.30308 * 18 5 4 51 51 H 0.97006 * 119.99745 * 90.68975 * 21 19 2 52 52 H 0.97007 * 120.00311 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0609 1.4349 0.0000 4 6 2.0667 -0.7708 -1.2253 5 7 3.2665 -1.4822 -0.7213 6 6 4.4425 -1.6676 -1.3531 7 8 4.6510 -1.1250 -2.4215 8 6 5.4742 -2.5266 -0.7503 9 6 5.3393 -3.3234 0.3733 10 6 6.5825 -3.9369 0.5432 11 7 7.3704 -3.5195 -0.4146 12 7 6.7557 -2.7006 -1.1901 13 6 7.3407 -2.0498 -2.3651 14 6 7.7247 -3.1086 -3.4193 15 6 9.0442 -2.5734 -4.0309 16 6 9.7709 -1.9700 -2.8034 17 6 8.6410 -1.3259 -1.9738 18 6 2.8803 -1.9415 0.6332 19 6 2.0665 -0.7702 1.2244 20 1 2.7097 -0.1270 1.8248 21 7 0.9556 -1.2793 2.0326 22 6 0.4266 -0.5078 3.0326 23 1 0.7744 0.5047 3.1749 24 6 -0.5567 -1.0272 3.8634 25 7 -0.9803 -2.2612 3.6903 26 14 -1.2779 0.0250 5.2281 27 1 -1.9071 1.2349 4.6403 28 1 -2.3018 -0.7564 5.9672 29 1 -0.1978 0.4329 6.1619 30 1 -0.3633 0.5247 -0.8836 31 1 -0.3632 -1.0276 -0.0125 32 1 -0.3633 0.5029 0.8963 33 1 1.7154 1.9503 0.8963 34 1 3.1508 1.4192 -0.0126 35 1 1.6949 1.9579 -0.8836 36 1 1.3235 -1.4844 -1.5808 37 1 2.3400 -0.0774 -2.0206 38 1 4.4599 -3.4444 0.9884 39 1 6.8469 -4.6318 1.3266 40 1 6.6314 -1.3398 -2.7902 41 1 7.8890 -4.0765 -2.9456 42 1 6.9515 -3.1834 -4.1839 43 1 8.8398 -1.8040 -4.7756 44 1 9.6270 -3.3864 -4.4639 45 1 10.4904 -1.2147 -3.1193 46 1 10.2674 -2.7522 -2.2291 47 1 8.5630 -0.2645 -2.2099 48 1 8.8362 -1.4580 -0.9096 49 1 3.7673 -2.1311 1.2375 50 1 2.2647 -2.8389 0.5711 51 1 0.5948 -2.1630 1.8592 52 1 -1.6673 -2.6243 4.2711 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995864037.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:13 Heat of formation + Delta-G solvation = 66.160932 kcal Electronic energy + Delta-G solvation = -31763.211501 eV Core-core repulsion = 27764.952337 eV Total energy + Delta-G solvation = -3998.259165 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.62773 -39.88287 -38.19051 -37.87397 -34.33231 -33.22697 -32.30123 -30.99158 -30.73269 -29.07516 -28.05632 -27.66057 -26.74289 -26.13032 -24.02597 -22.76612 -22.32847 -21.56529 -21.03711 -20.63335 -19.03989 -18.38153 -17.45065 -16.99620 -16.51398 -16.07786 -15.90425 -15.49252 -15.33551 -14.66875 -14.52499 -14.24533 -13.82794 -13.79000 -13.64069 -13.56710 -13.36147 -13.13747 -12.86318 -12.42523 -12.17875 -12.13751 -11.85316 -11.71748 -11.48113 -11.43291 -11.37828 -11.23947 -11.06445 -10.98152 -10.91099 -10.87516 -10.71668 -10.40707 -10.28955 -10.14576 -9.99482 -9.84843 -9.70873 -9.21112 -8.99766 -8.92854 -8.54708 -7.05182 -5.86282 -3.16052 1.27752 2.27038 2.62055 3.09648 3.23911 3.38499 3.44115 3.44656 4.13552 4.23920 4.37225 4.53660 4.59615 4.70625 5.01988 5.03577 5.07558 5.11121 5.15675 5.19801 5.24630 5.29449 5.32611 5.46701 5.53315 5.54572 5.56941 5.58524 5.62986 5.70974 5.74648 5.83795 5.86947 5.89516 5.93783 5.97584 6.01720 6.07060 6.12402 6.19931 6.28873 6.46240 6.48296 6.51737 6.71481 6.76097 6.76975 6.92468 7.28666 7.59296 7.63236 8.01517 8.15650 8.31630 9.43284 9.96610 10.32188 11.35451 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019191 B = 0.002633 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.696049 B =10633.106761 C =11354.206340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.104 4.104 3 C -0.129 4.129 4 C 0.118 3.882 5 N -0.600 5.600 6 C 0.610 3.390 7 O -0.555 6.555 8 C -0.033 4.033 9 C -0.194 4.194 10 C -0.008 4.008 11 N -0.276 5.276 12 N -0.251 5.251 13 C 0.131 3.869 14 C -0.129 4.129 15 C -0.121 4.121 16 C -0.120 4.120 17 C -0.131 4.131 18 C 0.077 3.923 19 C 0.177 3.823 20 H 0.064 0.936 21 N -0.711 5.711 22 C -0.239 4.239 23 H 0.070 0.930 24 C -0.007 4.007 25 N -0.929 5.929 26 Si 0.904 3.096 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.286 1.286 30 H 0.027 0.973 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.045 0.955 35 H 0.046 0.954 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.173 0.827 39 H 0.185 0.815 40 H 0.137 0.863 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.077 0.923 48 H 0.078 0.922 49 H 0.092 0.908 50 H 0.080 0.920 51 H 0.385 0.615 52 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.358 -0.641 -12.534 20.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.108 4.108 3 C -0.186 4.186 4 C -0.004 4.004 5 N -0.332 5.332 6 C 0.398 3.602 7 O -0.435 6.435 8 C -0.161 4.161 9 C -0.223 4.223 10 C -0.183 4.183 11 N -0.109 5.109 12 N -0.039 5.039 13 C 0.031 3.969 14 C -0.167 4.167 15 C -0.159 4.159 16 C -0.158 4.158 17 C -0.169 4.169 18 C -0.046 4.046 19 C 0.065 3.935 20 H 0.082 0.918 21 N -0.351 5.351 22 C -0.370 4.370 23 H 0.088 0.912 24 C -0.204 4.204 25 N -0.576 5.576 26 Si 0.735 3.265 27 H -0.212 1.212 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.046 0.954 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.190 0.810 39 H 0.202 0.798 40 H 0.154 0.846 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.088 0.912 46 H 0.090 0.910 47 H 0.095 0.905 48 H 0.096 0.904 49 H 0.110 0.890 50 H 0.098 0.902 51 H 0.220 0.780 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 17.637 -0.300 -13.521 22.225 hybrid contribution -1.482 0.202 1.226 1.934 sum 16.155 -0.097 -12.295 20.302 Atomic orbital electron populations 1.21523 0.92330 1.02158 1.00760 1.22307 0.97427 0.95193 0.95919 1.21768 0.99823 0.95664 1.01364 1.22626 0.84840 0.95431 0.97460 1.48556 1.12190 1.54378 1.18029 1.16395 0.80133 0.80018 0.83643 1.90695 1.78998 1.51090 1.22699 1.21330 0.88567 1.06132 1.00115 1.22848 1.00813 1.00435 0.98200 1.23603 0.91424 1.03807 0.99501 1.73088 1.25959 1.07510 1.04329 1.45906 1.06633 1.30637 1.20703 1.22799 0.97273 0.95189 0.81661 1.22734 0.98141 0.98582 0.97279 1.22479 0.95385 1.00501 0.97526 1.22323 0.97120 1.00154 0.96160 1.22479 0.93039 0.99681 1.01674 1.23340 1.00243 0.99256 0.81805 1.21150 0.89634 0.92183 0.90579 0.91840 1.42349 1.36195 1.19121 1.37419 1.19073 1.16099 0.95400 1.06411 0.91217 1.24728 1.00001 0.96270 0.99359 1.69638 1.32789 1.14207 1.40993 0.86326 0.78649 0.79342 0.82188 1.21234 1.21741 1.21256 0.95382 0.92485 0.90400 0.92259 0.93604 0.93479 0.90967 0.90472 0.81000 0.79776 0.84572 0.90228 0.90584 0.90963 0.90905 0.91238 0.91043 0.90471 0.90365 0.89033 0.90220 0.78035 0.93354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.90 7.41 37.16 0.28 -1.63 16 2 C -0.10 -1.67 1.03 -153.11 -0.16 -1.83 16 3 C -0.13 -1.93 8.23 37.16 0.31 -1.62 16 4 C 0.12 1.78 6.18 -2.32 -0.01 1.76 16 5 N -0.60 -9.13 3.32 -170.53 -0.57 -9.70 16 6 C 0.61 9.74 7.87 -12.64 -0.10 9.64 16 7 O -0.55 -9.72 14.69 5.25 0.08 -9.64 16 8 C -0.03 -0.49 6.90 -82.06 -0.57 -1.06 16 9 C -0.19 -2.57 9.34 -38.98 -0.36 -2.93 16 10 C -0.01 -0.09 12.03 -17.43 -0.21 -0.30 16 11 N -0.28 -3.73 11.04 30.59 0.34 -3.40 16 12 N -0.25 -3.45 3.06 -49.61 -0.15 -3.61 16 13 C 0.13 1.56 3.57 -66.81 -0.24 1.32 16 14 C -0.13 -1.31 6.52 -25.03 -0.16 -1.47 16 15 C -0.12 -0.94 6.91 -24.70 -0.17 -1.11 16 16 C -0.12 -0.96 6.83 -25.07 -0.17 -1.13 16 17 C -0.13 -1.31 6.46 -25.61 -0.17 -1.47 16 18 C 0.08 1.16 5.42 -2.40 -0.01 1.15 16 19 C 0.18 3.12 3.35 -66.53 -0.22 2.90 16 20 H 0.06 1.18 7.66 -51.93 -0.40 0.79 16 21 N -0.71 -15.43 3.67 -52.07 -0.19 -15.62 16 22 C -0.24 -5.92 8.45 -15.06 -0.13 -6.04 16 23 H 0.07 1.71 7.83 -52.48 -0.41 1.30 16 24 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 25 N -0.93 -25.93 13.06 55.49 0.72 -25.21 16 26 Si 0.90 21.12 29.55 -169.99 -5.02 16.09 16 27 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 29 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 30 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 1.05 7.76 -51.93 -0.40 0.65 16 32 H 0.08 1.56 6.68 -51.93 -0.35 1.21 16 33 H 0.06 0.93 8.14 -51.92 -0.42 0.50 16 34 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 1.06 7.85 -51.93 -0.41 0.65 16 37 H 0.08 1.16 7.56 -51.93 -0.39 0.77 16 38 H 0.17 2.09 5.19 -52.49 -0.27 1.82 16 39 H 0.19 1.68 8.06 -52.49 -0.42 1.26 16 40 H 0.14 1.83 5.45 -51.93 -0.28 1.54 16 41 H 0.08 0.88 7.80 -51.93 -0.41 0.48 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.08 0.89 7.59 -51.93 -0.39 0.49 16 49 H 0.09 1.30 4.95 -51.93 -0.26 1.04 16 50 H 0.08 1.21 7.75 -51.93 -0.40 0.81 16 51 H 0.39 8.96 7.58 -40.82 -0.31 8.66 16 52 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 401.16 15.07 6.05 6.05 Total: -1.00 -28.59 401.16 -9.41 -38.00 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -8.47 Total: 11.14 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -2.20 Total: -4.11 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: 0.15 Total: -57.53 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.08 Total: -9.64 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -28.59 -9.41 -38.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995864037.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.165 kcal (2) G-P(sol) polarization free energy of solvation -28.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds