Wall clock time and date at job start Wed Apr 1 2020 04:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 110.30338 * 2 1 4 4 C 1.54385 * 110.34193 * 237.82870 * 2 1 3 5 5 N 1.48315 * 104.53566 * 217.33086 * 4 2 1 6 6 C 1.34776 * 127.77208 * 219.51260 * 5 4 2 7 7 O 1.21630 * 119.99782 * 6.54861 * 6 5 4 8 8 C 1.47159 * 120.00329 * 186.55141 * 6 5 4 9 9 C 1.38411 * 126.88064 * 7.63201 * 8 6 5 10 10 C 1.39674 * 105.35671 * 180.02562 * 9 8 6 11 11 N 1.30864 * 107.86516 * 0.02562 * 10 9 8 12 12 N 1.28449 * 110.92331 * 359.71655 * 11 10 9 13 13 C 1.46502 * 125.19099 * 180.28313 * 12 11 10 14 14 C 1.54273 * 110.03325 * 63.59212 * 13 12 11 15 15 C 1.54966 * 104.15681 * 217.13881 * 14 13 12 16 16 C 1.54886 * 102.78134 * 37.88905 * 15 14 13 17 17 C 1.53873 * 110.03025 * 306.37676 * 13 12 11 18 18 C 1.48146 * 104.39140 * 39.46377 * 5 4 2 19 19 C 1.54279 * 110.34627 * 122.17239 * 2 1 3 20 20 H 1.08995 * 110.34969 * 237.74091 * 19 2 1 21 21 N 1.46501 * 110.34385 * 0.02562 * 19 2 1 22 22 C 1.36935 * 119.99991 * 270.69367 * 21 19 2 23 23 H 1.08003 * 120.00086 * 4.86280 * 22 21 19 24 24 C 1.38811 * 119.99785 * 184.85722 * 22 21 19 25 25 N 1.31618 * 120.00423 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 119.99953 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46954 * 60.00361 * 26 24 22 28 28 H 1.48498 * 109.47438 * 180.02562 * 26 24 22 29 29 H 1.48496 * 109.47181 * 300.00558 * 26 24 22 30 30 H 1.09001 * 109.47157 * 59.29879 * 1 2 3 31 31 H 1.08994 * 109.46678 * 179.30284 * 1 2 3 32 32 H 1.09002 * 109.46751 * 299.29602 * 1 2 3 33 33 H 1.09009 * 109.47561 * 60.70235 * 3 2 1 34 34 H 1.09005 * 109.47467 * 180.70218 * 3 2 1 35 35 H 1.09002 * 109.47598 * 300.70640 * 3 2 1 36 36 H 1.08996 * 110.40782 * 336.04220 * 4 2 1 37 37 H 1.08996 * 110.40769 * 98.47639 * 4 2 1 38 38 H 1.07995 * 127.32099 * 359.97438 * 9 8 6 39 39 H 1.08002 * 126.06831 * 179.97438 * 10 9 8 40 40 H 1.08994 * 110.01728 * 184.98345 * 13 12 11 41 41 H 1.09000 * 110.48421 * 335.78548 * 14 13 12 42 42 H 1.09000 * 110.48243 * 98.42663 * 14 13 12 43 43 H 1.09002 * 110.72018 * 279.57045 * 15 14 13 44 44 H 1.09004 * 110.75948 * 156.22813 * 15 14 13 45 45 H 1.08994 * 110.48442 * 203.40465 * 16 15 14 46 46 H 1.08999 * 110.59718 * 80.81377 * 16 15 14 47 47 H 1.09005 * 110.03241 * 238.56900 * 17 13 12 48 48 H 1.09003 * 110.03426 * 359.95102 * 17 13 12 49 49 H 1.08994 * 110.40687 * 201.69080 * 18 5 4 50 50 H 1.08996 * 110.51272 * 79.30308 * 18 5 4 51 51 H 0.97006 * 119.99745 * 90.68975 * 21 19 2 52 52 H 0.97007 * 120.00311 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0609 1.4349 0.0000 4 6 2.0667 -0.7708 -1.2253 5 7 3.2665 -1.4822 -0.7213 6 6 4.4425 -1.6676 -1.3531 7 8 4.6510 -1.1250 -2.4215 8 6 5.4742 -2.5266 -0.7503 9 6 5.3393 -3.3234 0.3733 10 6 6.5825 -3.9369 0.5432 11 7 7.3704 -3.5195 -0.4146 12 7 6.7557 -2.7006 -1.1901 13 6 7.3407 -2.0498 -2.3651 14 6 7.7247 -3.1086 -3.4193 15 6 9.0442 -2.5734 -4.0309 16 6 9.7709 -1.9700 -2.8034 17 6 8.6410 -1.3259 -1.9738 18 6 2.8803 -1.9415 0.6332 19 6 2.0665 -0.7702 1.2244 20 1 2.7097 -0.1270 1.8248 21 7 0.9556 -1.2793 2.0326 22 6 0.4266 -0.5078 3.0326 23 1 0.7744 0.5047 3.1749 24 6 -0.5567 -1.0272 3.8634 25 7 -0.9803 -2.2612 3.6903 26 14 -1.2779 0.0250 5.2281 27 1 -1.9071 1.2349 4.6403 28 1 -2.3018 -0.7564 5.9672 29 1 -0.1978 0.4329 6.1619 30 1 -0.3633 0.5247 -0.8836 31 1 -0.3632 -1.0276 -0.0125 32 1 -0.3633 0.5029 0.8963 33 1 1.7154 1.9503 0.8963 34 1 3.1508 1.4192 -0.0126 35 1 1.6949 1.9579 -0.8836 36 1 1.3235 -1.4844 -1.5808 37 1 2.3400 -0.0774 -2.0206 38 1 4.4599 -3.4444 0.9884 39 1 6.8469 -4.6318 1.3266 40 1 6.6314 -1.3398 -2.7902 41 1 7.8890 -4.0765 -2.9456 42 1 6.9515 -3.1834 -4.1839 43 1 8.8398 -1.8040 -4.7756 44 1 9.6270 -3.3864 -4.4639 45 1 10.4904 -1.2147 -3.1193 46 1 10.2674 -2.7522 -2.2291 47 1 8.5630 -0.2645 -2.2099 48 1 8.8362 -1.4580 -0.9096 49 1 3.7673 -2.1311 1.2375 50 1 2.2647 -2.8389 0.5711 51 1 0.5948 -2.1630 1.8592 52 1 -1.6673 -2.6243 4.2711 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995864037.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:12 Heat of formation + Delta-G solvation = 51.555120 kcal Electronic energy + Delta-G solvation = -31763.844857 eV Core-core repulsion = 27764.952337 eV Total energy + Delta-G solvation = -3998.892520 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.65566 -41.18690 -39.28528 -38.90913 -35.92651 -34.68651 -33.24356 -32.68894 -31.90248 -29.82393 -29.48585 -28.61219 -28.04883 -27.43301 -25.72952 -24.13983 -23.27191 -22.88118 -21.72840 -21.67856 -20.14804 -19.67865 -19.21492 -18.22498 -17.68366 -17.24928 -16.80307 -16.64433 -16.56269 -16.15506 -15.71023 -15.48147 -15.16996 -15.02884 -14.93166 -14.66829 -14.41591 -14.40150 -14.19024 -13.84145 -13.54699 -13.17744 -12.92771 -12.81287 -12.70159 -12.67359 -12.66395 -12.44345 -12.19171 -12.16212 -12.12998 -12.06142 -11.96326 -11.82654 -11.57241 -11.55291 -11.43189 -11.38540 -11.06228 -10.78937 -10.29849 -9.99966 -9.80374 -8.90531 -7.86907 -5.13754 0.15534 1.22302 1.52918 1.53517 1.58799 1.61539 1.94068 2.05600 2.61591 3.18393 3.32307 3.44901 3.47375 3.73023 3.76525 3.87325 3.89677 3.91337 4.09670 4.12831 4.27832 4.30357 4.36692 4.38264 4.38552 4.46823 4.51174 4.59417 4.65585 4.68530 4.75213 4.76497 4.80070 4.86124 4.90925 4.92837 4.97868 5.05700 5.07991 5.12323 5.15605 5.17081 5.28663 5.36758 5.40924 5.51788 5.54057 5.62167 5.77180 5.79665 6.32087 6.35764 6.83396 7.07276 7.42913 8.13914 8.39542 9.35409 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019191 B = 0.002633 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.696049 B =10633.106761 C =11354.206340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.098 4.098 3 C -0.124 4.124 4 C 0.123 3.877 5 N -0.598 5.598 6 C 0.609 3.391 7 O -0.573 6.573 8 C -0.058 4.058 9 C -0.192 4.192 10 C -0.008 4.008 11 N -0.284 5.284 12 N -0.253 5.253 13 C 0.123 3.877 14 C -0.126 4.126 15 C -0.114 4.114 16 C -0.114 4.114 17 C -0.127 4.127 18 C 0.088 3.912 19 C 0.173 3.827 20 H 0.056 0.944 21 N -0.715 5.715 22 C -0.221 4.221 23 H 0.072 0.928 24 C -0.065 4.065 25 N -0.963 5.963 26 Si 0.957 3.043 27 H -0.282 1.282 28 H -0.301 1.301 29 H -0.282 1.282 30 H 0.051 0.949 31 H 0.040 0.960 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.046 0.954 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.181 0.819 39 H 0.216 0.784 40 H 0.119 0.881 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.068 0.932 47 H 0.084 0.916 48 H 0.063 0.937 49 H 0.104 0.896 50 H 0.082 0.918 51 H 0.377 0.623 52 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.057 -0.234 -13.401 22.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.101 4.101 3 C -0.181 4.181 4 C 0.001 3.999 5 N -0.329 5.329 6 C 0.399 3.601 7 O -0.455 6.455 8 C -0.186 4.186 9 C -0.221 4.221 10 C -0.183 4.183 11 N -0.116 5.116 12 N -0.041 5.041 13 C 0.023 3.977 14 C -0.164 4.164 15 C -0.151 4.151 16 C -0.152 4.152 17 C -0.166 4.166 18 C -0.035 4.035 19 C 0.062 3.938 20 H 0.074 0.926 21 N -0.355 5.355 22 C -0.353 4.353 23 H 0.089 0.911 24 C -0.258 4.258 25 N -0.613 5.613 26 Si 0.788 3.212 27 H -0.208 1.208 28 H -0.228 1.228 29 H -0.209 1.209 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.198 0.802 39 H 0.232 0.768 40 H 0.137 0.863 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.087 0.913 47 H 0.103 0.897 48 H 0.081 0.919 49 H 0.122 0.878 50 H 0.100 0.900 51 H 0.210 0.790 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 19.374 0.143 -14.413 24.147 hybrid contribution -1.947 0.106 1.432 2.420 sum 17.426 0.249 -12.980 21.731 Atomic orbital electron populations 1.21384 0.93100 1.01003 1.00375 1.22157 0.96622 0.95922 0.95440 1.21713 0.99823 0.94779 1.01784 1.22575 0.84901 0.95551 0.96865 1.48502 1.12155 1.54348 1.17870 1.16564 0.80274 0.79871 0.83419 1.90685 1.79343 1.51923 1.23515 1.21341 0.88994 1.07076 1.01150 1.23012 1.01501 0.99928 0.97657 1.24149 0.90757 1.03702 0.99663 1.73095 1.26308 1.07579 1.04663 1.46108 1.06367 1.30621 1.21042 1.22947 0.97524 0.95570 0.81707 1.22713 0.99446 0.97599 0.96689 1.22487 0.93979 1.01176 0.97499 1.22312 0.96656 1.00436 0.95780 1.22476 0.92873 1.00139 1.01077 1.23178 1.00341 0.98083 0.81891 1.21275 0.88660 0.93179 0.90694 0.92588 1.42388 1.37147 1.18516 1.37405 1.19316 1.14748 0.95403 1.05829 0.91058 1.25319 1.01380 0.97294 1.01773 1.69766 1.33808 1.15660 1.42085 0.85462 0.77740 0.77971 0.80068 1.20820 1.22785 1.20873 0.93050 0.94063 0.93318 0.93133 0.93490 0.91751 0.90371 0.89989 0.80177 0.76755 0.86290 0.91312 0.90929 0.89925 0.89416 0.89316 0.91345 0.89737 0.91855 0.87794 0.89981 0.78989 0.94245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.42 7.41 71.98 0.53 -2.88 16 2 C -0.10 -3.02 1.03 -51.28 -0.05 -3.07 16 3 C -0.12 -3.51 8.23 71.98 0.59 -2.92 16 4 C 0.12 3.52 6.18 86.50 0.53 4.05 16 5 N -0.60 -17.54 3.32 -811.70 -2.69 -20.23 16 6 C 0.61 19.02 7.87 86.59 0.68 19.70 16 7 O -0.57 -19.81 14.69 -4.13 -0.06 -19.87 16 8 C -0.06 -1.66 6.90 40.79 0.28 -1.38 16 9 C -0.19 -4.82 9.34 22.66 0.21 -4.61 16 10 C -0.01 -0.18 12.03 85.18 1.02 0.85 16 11 N -0.28 -7.34 11.04 -57.14 -0.63 -7.97 16 12 N -0.25 -6.81 3.06 -310.88 -0.95 -7.76 16 13 C 0.12 2.85 3.57 45.72 0.16 3.02 16 14 C -0.13 -2.44 6.52 31.70 0.21 -2.24 16 15 C -0.11 -1.52 6.91 31.91 0.22 -1.30 16 16 C -0.11 -1.60 6.83 31.67 0.22 -1.38 16 17 C -0.13 -2.42 6.46 31.32 0.20 -2.22 16 18 C 0.09 2.58 5.42 86.54 0.47 3.05 16 19 C 0.17 5.97 3.35 45.90 0.15 6.12 16 20 H 0.06 2.05 7.66 -2.39 -0.02 2.03 16 21 N -0.72 -31.06 3.67 -318.65 -1.17 -32.22 16 22 C -0.22 -10.94 8.45 84.03 0.71 -10.23 16 23 H 0.07 3.46 7.83 -2.91 -0.02 3.44 16 24 C -0.06 -3.43 5.50 84.86 0.47 -2.97 16 25 N -0.96 -54.64 13.06 21.65 0.28 -54.35 16 26 Si 0.96 43.73 29.55 68.60 2.03 45.75 16 27 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 28 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 29 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 30 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.04 1.51 7.76 -2.39 -0.02 1.49 16 32 H 0.05 1.93 6.68 -2.39 -0.02 1.92 16 33 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.08 2.17 7.85 -2.39 -0.02 2.15 16 37 H 0.08 2.31 7.56 -2.39 -0.02 2.29 16 38 H 0.18 4.10 5.19 -2.91 -0.02 4.08 16 39 H 0.22 3.34 8.06 -2.91 -0.02 3.31 16 40 H 0.12 3.19 5.45 -2.39 -0.01 3.18 16 41 H 0.07 1.48 7.80 -2.39 -0.02 1.46 16 42 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.09 0.94 8.14 -2.38 -0.02 0.93 16 45 H 0.09 0.92 8.14 -2.39 -0.02 0.91 16 46 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 48 H 0.06 1.39 7.59 -2.39 -0.02 1.37 16 49 H 0.10 2.81 4.95 -2.39 -0.01 2.79 16 50 H 0.08 2.42 7.75 -2.39 -0.02 2.40 16 51 H 0.38 17.70 7.58 -92.70 -0.70 17.00 16 52 H 0.25 13.99 8.31 -92.70 -0.77 13.22 16 Total: -1.00 -61.26 401.16 3.64 -57.62 By element: Atomic # 1 Polarization: 37.23 SS G_CDS: 0.22 Total: 37.45 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: 6.62 Total: 1.59 kcal Atomic # 7 Polarization: -117.38 SS G_CDS: -5.16 Total: -122.54 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.06 Total: -19.87 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -61.26 3.64 -57.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995864037.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.176 kcal (2) G-P(sol) polarization free energy of solvation -61.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds