Wall clock time and date at job start Wed Apr 1 2020 04:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 110.88879 * 2 1 4 4 C 1.55132 * 111.18884 * 236.06943 * 2 1 3 5 5 N 1.47427 * 104.72016 * 279.19158 * 4 2 1 6 6 C 1.34775 * 125.64960 * 155.82018 * 5 4 2 7 7 O 1.21636 * 120.00028 * 3.89859 * 6 5 4 8 8 C 1.47165 * 120.00352 * 183.90025 * 6 5 4 9 9 C 1.38400 * 126.88078 * 4.69357 * 8 6 5 10 10 C 1.39675 * 105.35672 * 180.26347 * 9 8 6 11 11 N 1.30866 * 107.86067 * 359.74615 * 10 9 8 12 12 N 1.28438 * 110.92940 * 359.97438 * 11 10 9 13 13 C 1.46499 * 125.19140 * 179.97438 * 12 11 10 14 14 C 1.55236 * 110.57959 * 49.83439 * 13 12 11 15 15 C 1.54881 * 102.58807 * 203.33516 * 14 13 12 16 16 C 1.54265 * 104.31158 * 37.93304 * 15 14 13 17 17 C 1.53869 * 106.59918 * 336.32217 * 16 15 14 18 18 C 1.47023 * 108.70277 * 335.55505 * 5 4 2 19 19 C 1.54321 * 107.27050 * 1.28464 * 18 5 4 20 20 H 1.09008 * 110.71631 * 140.55807 * 19 18 5 21 21 N 1.46494 * 110.72077 * 263.65063 * 19 18 5 22 22 C 1.36942 * 120.00374 * 268.67353 * 21 19 18 23 23 H 1.07998 * 119.99463 * 4.99300 * 22 21 19 24 24 C 1.38807 * 120.00176 * 184.99489 * 22 21 19 25 25 N 1.31616 * 119.99982 * 180.02562 * 24 22 21 26 26 Si 1.86806 * 120.00005 * 359.97438 * 24 22 21 27 27 H 1.48500 * 109.47182 * 90.00105 * 26 24 22 28 28 H 1.48496 * 109.46847 * 210.00482 * 26 24 22 29 29 H 1.48497 * 109.46926 * 329.99762 * 26 24 22 30 30 H 1.08999 * 109.46823 * 296.11985 * 1 2 3 31 31 H 1.09000 * 109.46951 * 56.11390 * 1 2 3 32 32 H 1.08998 * 109.46997 * 176.12020 * 1 2 3 33 33 H 1.09006 * 109.47342 * 183.88347 * 3 2 1 34 34 H 1.09001 * 109.47046 * 303.88040 * 3 2 1 35 35 H 1.09005 * 109.47349 * 63.87978 * 3 2 1 36 36 H 1.08998 * 110.49776 * 160.35589 * 4 2 1 37 37 H 1.08999 * 110.34768 * 37.95322 * 4 2 1 38 38 H 1.07995 * 127.32429 * 359.97438 * 9 8 6 39 39 H 1.07994 * 126.07081 * 179.76680 * 10 9 8 40 40 H 1.09001 * 110.43079 * 172.41575 * 13 12 11 41 41 H 1.09007 * 110.89757 * 85.04421 * 14 13 12 42 42 H 1.08996 * 110.76368 * 321.56979 * 14 13 12 43 43 H 1.08996 * 110.49031 * 279.18715 * 15 14 13 44 44 H 1.09009 * 110.48846 * 156.67812 * 15 14 13 45 45 H 1.09000 * 110.03149 * 95.61107 * 16 15 14 46 46 H 1.09001 * 110.03286 * 216.98434 * 16 15 14 47 47 H 1.08998 * 110.02817 * 119.28821 * 17 16 15 48 48 H 1.08998 * 110.03190 * 240.66565 * 17 16 15 49 49 H 1.08999 * 109.88338 * 120.70825 * 18 5 4 50 50 H 1.09003 * 109.88001 * 241.71234 * 18 5 4 51 51 H 0.97000 * 119.99749 * 88.67785 * 21 19 18 52 52 H 0.97008 * 120.00008 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0756 1.4294 0.0000 4 6 2.0908 -0.8074 -1.2001 5 7 2.0138 -2.2162 -0.7726 6 6 1.9470 -3.2835 -1.5928 7 8 2.0185 -3.1302 -2.7974 8 6 1.7875 -4.6344 -1.0312 9 6 1.6015 -4.9638 0.3001 10 6 1.5112 -6.3574 0.3272 11 7 1.6313 -6.7913 -0.9016 12 7 1.7897 -5.8141 -1.7199 13 6 1.9555 -5.9452 -3.1695 14 6 0.8499 -6.8579 -3.7649 15 6 1.4986 -7.3611 -5.0782 16 6 2.9810 -7.5801 -4.7118 17 6 3.2715 -6.6798 -3.4983 18 6 2.0285 -2.2644 0.6968 19 6 2.0862 -0.8075 1.2024 20 1 1.4524 -0.6784 2.0799 21 7 3.4663 -0.4165 1.5003 22 6 3.9702 -0.5905 2.7616 23 1 3.3789 -1.0890 3.5153 24 6 5.2410 -0.1259 3.0715 25 7 5.7256 -0.2935 4.2836 26 14 6.2641 0.7359 1.7675 27 1 5.9911 2.1950 1.8085 28 1 7.7056 0.4944 2.0299 29 1 5.9089 0.2032 0.4277 30 1 -0.3633 0.4524 0.9227 31 1 -0.3633 0.5730 -0.8531 32 1 -0.3633 -1.0253 -0.0695 33 1 3.1631 1.4033 -0.0696 34 1 1.6699 1.9731 -0.8532 35 1 1.7824 1.9302 0.9227 36 1 3.1253 -0.5273 -1.3986 37 1 1.4764 -0.6457 -2.0859 38 1 1.5437 -4.2876 1.1401 39 1 1.3675 -6.9683 1.2060 40 1 1.9371 -4.9644 -3.6448 41 1 -0.0545 -6.2867 -3.9748 42 1 0.6352 -7.6913 -3.0960 43 1 1.4064 -6.6091 -5.8618 44 1 1.0413 -8.2986 -5.3948 45 1 3.1508 -8.6247 -4.4510 46 1 3.6185 -7.2964 -5.5492 47 1 3.5823 -7.2876 -2.6485 48 1 4.0506 -5.9590 -3.7461 49 1 1.1218 -2.7476 1.0609 50 1 2.9048 -2.8137 1.0409 51 1 4.0231 -0.0344 0.8039 52 1 6.6135 0.0315 4.5003 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995864038.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:16 Heat of formation + Delta-G solvation = 62.126799 kcal Electronic energy + Delta-G solvation = -32000.618876 eV Core-core repulsion = 28002.184778 eV Total energy + Delta-G solvation = -3998.434098 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.55641 -40.05533 -38.17040 -37.93430 -34.25148 -33.50967 -32.29968 -31.18213 -30.79400 -29.04905 -28.47743 -27.71201 -26.97825 -26.48040 -24.07479 -22.60103 -22.38687 -21.23914 -20.75304 -20.60634 -19.28494 -18.87811 -17.65149 -17.08438 -16.42668 -16.17191 -15.95215 -15.53109 -15.15931 -14.74275 -14.51052 -14.42652 -14.21377 -13.78824 -13.69803 -13.61663 -13.37032 -12.90368 -12.79360 -12.56101 -12.31852 -12.18001 -12.05108 -11.82899 -11.76081 -11.70914 -11.53990 -11.45182 -11.30436 -11.23261 -11.03645 -10.78010 -10.74580 -10.63687 -10.51650 -10.33691 -10.02613 -9.80809 -9.66626 -9.15314 -9.06200 -8.92987 -8.45976 -7.41319 -5.87951 -3.25574 1.32815 2.32164 2.67931 3.16680 3.29630 3.29986 3.32283 3.39200 4.19851 4.25996 4.38386 4.49205 4.59360 4.72388 4.74318 4.88414 4.99486 5.09574 5.14150 5.15566 5.17359 5.22526 5.29395 5.33647 5.43720 5.47447 5.52942 5.58284 5.60582 5.62882 5.71536 5.74398 5.77079 5.82676 5.87812 5.92924 5.96514 6.01669 6.03615 6.05415 6.09662 6.15880 6.21232 6.37659 6.42667 6.58145 6.59928 6.63185 6.80725 7.58584 7.87024 8.06346 8.20014 8.30803 9.07655 9.80049 9.98335 11.29627 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013040 B = 0.003149 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.694804 B = 8890.466319 C = 9411.284010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.093 4.093 3 C -0.126 4.126 4 C 0.122 3.878 5 N -0.589 5.589 6 C 0.603 3.397 7 O -0.557 6.557 8 C -0.034 4.034 9 C -0.192 4.192 10 C -0.008 4.008 11 N -0.278 5.278 12 N -0.250 5.250 13 C 0.130 3.870 14 C -0.127 4.127 15 C -0.122 4.122 16 C -0.119 4.119 17 C -0.132 4.132 18 C 0.063 3.937 19 C 0.184 3.816 20 H 0.085 0.915 21 N -0.736 5.736 22 C -0.251 4.251 23 H 0.093 0.907 24 C 0.012 3.988 25 N -0.928 5.928 26 Si 0.879 3.121 27 H -0.282 1.282 28 H -0.290 1.290 29 H -0.278 1.278 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.173 0.827 39 H 0.185 0.815 40 H 0.140 0.860 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.077 0.923 48 H 0.073 0.927 49 H 0.069 0.931 50 H 0.086 0.914 51 H 0.363 0.637 52 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.649 -9.181 -14.691 20.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.095 4.095 3 C -0.184 4.184 4 C 0.000 4.000 5 N -0.320 5.320 6 C 0.391 3.609 7 O -0.438 6.438 8 C -0.161 4.161 9 C -0.221 4.221 10 C -0.184 4.184 11 N -0.110 5.110 12 N -0.038 5.038 13 C 0.029 3.971 14 C -0.165 4.165 15 C -0.159 4.159 16 C -0.157 4.157 17 C -0.171 4.171 18 C -0.062 4.062 19 C 0.072 3.928 20 H 0.103 0.897 21 N -0.377 5.377 22 C -0.380 4.380 23 H 0.111 0.889 24 C -0.184 4.184 25 N -0.574 5.574 26 Si 0.709 3.291 27 H -0.208 1.208 28 H -0.217 1.217 29 H -0.205 1.205 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.190 0.810 39 H 0.202 0.798 40 H 0.157 0.843 41 H 0.091 0.909 42 H 0.103 0.897 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.095 0.905 48 H 0.092 0.908 49 H 0.087 0.913 50 H 0.104 0.896 51 H 0.198 0.802 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.503 -10.168 -15.873 22.083 hybrid contribution 1.052 1.171 -0.160 1.582 sum -10.451 -8.997 -16.033 21.148 Atomic orbital electron populations 1.21675 0.93411 1.01723 1.01907 1.22141 0.95819 0.95954 0.95547 1.21587 1.01215 0.93862 1.01724 1.22386 1.01073 0.79153 0.97432 1.48025 1.70337 1.05618 1.08003 1.16507 0.77059 0.82192 0.85152 1.90685 1.53269 1.85695 1.14134 1.21287 1.13499 0.88680 0.92671 1.22944 1.06703 0.96763 0.95642 1.23594 1.06193 0.94039 0.94576 1.73054 1.19187 1.17356 1.01452 1.45749 1.48665 1.01733 1.07656 1.23084 0.96741 1.03667 0.73579 1.22867 0.97077 0.99370 0.97234 1.22302 0.95287 1.01516 0.96844 1.22065 0.96536 0.99822 0.97252 1.22483 0.96231 0.99014 0.99334 1.23681 1.01694 1.02691 0.78156 1.21226 0.87742 0.89007 0.94849 0.89720 1.42802 1.08769 1.75664 1.10495 1.19036 0.99438 1.32344 0.87203 0.88895 1.24660 0.97440 1.00405 0.95928 1.69688 1.18062 1.51233 1.18467 0.86650 0.80452 0.80205 0.81757 1.20811 1.21664 1.20486 0.91923 0.92701 0.92670 0.92268 0.93199 0.91457 0.91319 0.90675 0.80952 0.79795 0.84299 0.90862 0.89669 0.91075 0.90913 0.91295 0.91280 0.90472 0.90789 0.91310 0.89593 0.80234 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 8.59 37.16 0.32 -1.17 16 2 C -0.09 -1.28 0.84 -152.24 -0.13 -1.41 16 3 C -0.13 -1.75 8.22 37.15 0.31 -1.44 16 4 C 0.12 1.81 5.79 -2.41 -0.01 1.80 16 5 N -0.59 -9.25 3.31 -171.74 -0.57 -9.82 16 6 C 0.60 10.06 7.83 -12.64 -0.10 9.96 16 7 O -0.56 -10.12 14.70 5.25 0.08 -10.04 16 8 C -0.03 -0.52 6.91 -82.06 -0.57 -1.09 16 9 C -0.19 -2.68 9.50 -38.99 -0.37 -3.06 16 10 C -0.01 -0.11 12.03 -17.43 -0.21 -0.32 16 11 N -0.28 -3.98 11.04 30.59 0.34 -3.64 16 12 N -0.25 -3.65 3.18 -48.92 -0.16 -3.81 16 13 C 0.13 1.65 3.54 -66.09 -0.23 1.41 16 14 C -0.13 -1.31 6.52 -24.55 -0.16 -1.47 16 15 C -0.12 -0.98 6.82 -25.08 -0.17 -1.16 16 16 C -0.12 -1.02 6.80 -25.62 -0.17 -1.19 16 17 C -0.13 -1.49 6.52 -25.62 -0.17 -1.66 16 18 C 0.06 0.97 4.49 -3.07 -0.01 0.96 16 19 C 0.18 3.04 2.88 -66.10 -0.19 2.85 16 20 H 0.08 1.40 7.99 -51.92 -0.42 0.98 16 21 N -0.74 -15.50 4.30 -51.66 -0.22 -15.72 16 22 C -0.25 -6.44 10.44 -15.06 -0.16 -6.60 16 23 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 24 C 0.01 0.34 5.50 -17.43 -0.10 0.25 16 25 N -0.93 -27.80 13.97 55.49 0.78 -27.03 16 26 Si 0.88 21.20 27.79 -169.99 -4.72 16.48 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 29 H -0.28 -6.40 6.45 56.52 0.36 -6.03 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.64 7.91 -51.93 -0.41 0.23 16 33 H 0.06 0.92 6.49 -51.93 -0.34 0.59 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.07 1.10 7.99 -51.93 -0.41 0.69 16 37 H 0.07 1.06 8.00 -51.93 -0.42 0.64 16 38 H 0.17 2.21 4.66 -52.49 -0.24 1.96 16 39 H 0.19 1.80 8.06 -52.49 -0.42 1.37 16 40 H 0.14 1.97 5.44 -51.93 -0.28 1.69 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.08 0.93 7.67 -51.93 -0.40 0.54 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.08 0.96 7.85 -51.93 -0.41 0.55 16 48 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.07 0.91 6.22 -51.93 -0.32 0.59 16 50 H 0.09 1.52 7.52 -51.93 -0.39 1.13 16 51 H 0.36 7.78 4.17 -40.82 -0.17 7.61 16 52 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 399.92 15.07 6.03 6.03 Total: -1.00 -30.91 399.92 -9.03 -39.94 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -8.46 Total: 10.93 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -2.13 Total: -3.33 kcal Atomic # 7 Polarization: -60.18 SS G_CDS: 0.17 Total: -60.01 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.08 Total: -10.04 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.72 Total: 16.48 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.91 -9.03 -39.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995864038.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.070 kcal (2) G-P(sol) polarization free energy of solvation -30.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds