Wall clock time and date at job start Wed Apr 1 2020 04:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 110.88879 * 2 1 4 4 C 1.55132 * 111.18884 * 236.06943 * 2 1 3 5 5 N 1.47427 * 104.72016 * 279.19158 * 4 2 1 6 6 C 1.34775 * 125.64960 * 155.82018 * 5 4 2 7 7 O 1.21636 * 120.00028 * 3.89859 * 6 5 4 8 8 C 1.47165 * 120.00352 * 183.90025 * 6 5 4 9 9 C 1.38400 * 126.88078 * 4.69357 * 8 6 5 10 10 C 1.39675 * 105.35672 * 180.26347 * 9 8 6 11 11 N 1.30866 * 107.86067 * 359.74615 * 10 9 8 12 12 N 1.28438 * 110.92940 * 359.97438 * 11 10 9 13 13 C 1.46499 * 125.19140 * 179.97438 * 12 11 10 14 14 C 1.55236 * 110.57959 * 49.83439 * 13 12 11 15 15 C 1.54881 * 102.58807 * 203.33516 * 14 13 12 16 16 C 1.54265 * 104.31158 * 37.93304 * 15 14 13 17 17 C 1.53869 * 106.59918 * 336.32217 * 16 15 14 18 18 C 1.47023 * 108.70277 * 335.55505 * 5 4 2 19 19 C 1.54321 * 107.27050 * 1.28464 * 18 5 4 20 20 H 1.09008 * 110.71631 * 140.55807 * 19 18 5 21 21 N 1.46494 * 110.72077 * 263.65063 * 19 18 5 22 22 C 1.36942 * 120.00374 * 268.67353 * 21 19 18 23 23 H 1.07998 * 119.99463 * 4.99300 * 22 21 19 24 24 C 1.38807 * 120.00176 * 184.99489 * 22 21 19 25 25 N 1.31616 * 119.99982 * 180.02562 * 24 22 21 26 26 Si 1.86806 * 120.00005 * 359.97438 * 24 22 21 27 27 H 1.48500 * 109.47182 * 90.00105 * 26 24 22 28 28 H 1.48496 * 109.46847 * 210.00482 * 26 24 22 29 29 H 1.48497 * 109.46926 * 329.99762 * 26 24 22 30 30 H 1.08999 * 109.46823 * 296.11985 * 1 2 3 31 31 H 1.09000 * 109.46951 * 56.11390 * 1 2 3 32 32 H 1.08998 * 109.46997 * 176.12020 * 1 2 3 33 33 H 1.09006 * 109.47342 * 183.88347 * 3 2 1 34 34 H 1.09001 * 109.47046 * 303.88040 * 3 2 1 35 35 H 1.09005 * 109.47349 * 63.87978 * 3 2 1 36 36 H 1.08998 * 110.49776 * 160.35589 * 4 2 1 37 37 H 1.08999 * 110.34768 * 37.95322 * 4 2 1 38 38 H 1.07995 * 127.32429 * 359.97438 * 9 8 6 39 39 H 1.07994 * 126.07081 * 179.76680 * 10 9 8 40 40 H 1.09001 * 110.43079 * 172.41575 * 13 12 11 41 41 H 1.09007 * 110.89757 * 85.04421 * 14 13 12 42 42 H 1.08996 * 110.76368 * 321.56979 * 14 13 12 43 43 H 1.08996 * 110.49031 * 279.18715 * 15 14 13 44 44 H 1.09009 * 110.48846 * 156.67812 * 15 14 13 45 45 H 1.09000 * 110.03149 * 95.61107 * 16 15 14 46 46 H 1.09001 * 110.03286 * 216.98434 * 16 15 14 47 47 H 1.08998 * 110.02817 * 119.28821 * 17 16 15 48 48 H 1.08998 * 110.03190 * 240.66565 * 17 16 15 49 49 H 1.08999 * 109.88338 * 120.70825 * 18 5 4 50 50 H 1.09003 * 109.88001 * 241.71234 * 18 5 4 51 51 H 0.97000 * 119.99749 * 88.67785 * 21 19 18 52 52 H 0.97008 * 120.00008 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0756 1.4294 0.0000 4 6 2.0908 -0.8074 -1.2001 5 7 2.0138 -2.2162 -0.7726 6 6 1.9470 -3.2835 -1.5928 7 8 2.0185 -3.1302 -2.7974 8 6 1.7875 -4.6344 -1.0312 9 6 1.6015 -4.9638 0.3001 10 6 1.5112 -6.3574 0.3272 11 7 1.6313 -6.7913 -0.9016 12 7 1.7897 -5.8141 -1.7199 13 6 1.9555 -5.9452 -3.1695 14 6 0.8499 -6.8579 -3.7649 15 6 1.4986 -7.3611 -5.0782 16 6 2.9810 -7.5801 -4.7118 17 6 3.2715 -6.6798 -3.4983 18 6 2.0285 -2.2644 0.6968 19 6 2.0862 -0.8075 1.2024 20 1 1.4524 -0.6784 2.0799 21 7 3.4663 -0.4165 1.5003 22 6 3.9702 -0.5905 2.7616 23 1 3.3789 -1.0890 3.5153 24 6 5.2410 -0.1259 3.0715 25 7 5.7256 -0.2935 4.2836 26 14 6.2641 0.7359 1.7675 27 1 5.9911 2.1950 1.8085 28 1 7.7056 0.4944 2.0299 29 1 5.9089 0.2032 0.4277 30 1 -0.3633 0.4524 0.9227 31 1 -0.3633 0.5730 -0.8531 32 1 -0.3633 -1.0253 -0.0695 33 1 3.1631 1.4033 -0.0696 34 1 1.6699 1.9731 -0.8532 35 1 1.7824 1.9302 0.9227 36 1 3.1253 -0.5273 -1.3986 37 1 1.4764 -0.6457 -2.0859 38 1 1.5437 -4.2876 1.1401 39 1 1.3675 -6.9683 1.2060 40 1 1.9371 -4.9644 -3.6448 41 1 -0.0545 -6.2867 -3.9748 42 1 0.6352 -7.6913 -3.0960 43 1 1.4064 -6.6091 -5.8618 44 1 1.0413 -8.2986 -5.3948 45 1 3.1508 -8.6247 -4.4510 46 1 3.6185 -7.2964 -5.5492 47 1 3.5823 -7.2876 -2.6485 48 1 4.0506 -5.9590 -3.7461 49 1 1.1218 -2.7476 1.0609 50 1 2.9048 -2.8137 1.0409 51 1 4.0231 -0.0344 0.8039 52 1 6.6135 0.0315 4.5003 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995864038.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:15 Heat of formation + Delta-G solvation = 44.530326 kcal Electronic energy + Delta-G solvation = -32001.381916 eV Core-core repulsion = 28002.184778 eV Total energy + Delta-G solvation = -3999.197138 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.64767 -41.32841 -39.33549 -38.92797 -35.90249 -34.87251 -33.29212 -33.04996 -31.94021 -29.89051 -29.85385 -28.62284 -28.09801 -27.65474 -25.69768 -24.00111 -23.38973 -22.60734 -21.71585 -21.47555 -20.63498 -20.03975 -19.38136 -18.24126 -17.65991 -17.38755 -16.97857 -16.66761 -16.46051 -16.13267 -16.04074 -15.57646 -15.21875 -15.18602 -14.72613 -14.65197 -14.52126 -14.41420 -14.08765 -13.80463 -13.64442 -13.40983 -13.18026 -13.08998 -12.89719 -12.79716 -12.67576 -12.64335 -12.27005 -12.24712 -12.22673 -12.13711 -11.96269 -11.84413 -11.74725 -11.60170 -11.45084 -11.33649 -11.04315 -10.94796 -10.29833 -10.00797 -9.74772 -9.30240 -8.00295 -5.33116 0.14761 1.23507 1.36680 1.37953 1.44349 1.60938 1.98112 2.06947 2.47931 3.17280 3.29309 3.33275 3.42531 3.49393 3.59577 3.71465 3.76819 3.87683 3.96719 4.10026 4.23483 4.25258 4.34179 4.35390 4.36818 4.42515 4.49195 4.54492 4.61530 4.63299 4.70639 4.72078 4.80312 4.88006 4.90339 4.91748 4.97118 5.05596 5.06339 5.08736 5.10279 5.12171 5.17686 5.28596 5.34103 5.39284 5.51691 5.54051 5.75361 5.82666 6.23987 6.30245 6.83570 7.05929 7.09553 7.85069 8.02202 9.20674 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013040 B = 0.003149 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.694804 B = 8890.466319 C = 9411.284010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.078 4.078 3 C -0.126 4.126 4 C 0.119 3.881 5 N -0.588 5.588 6 C 0.599 3.401 7 O -0.577 6.577 8 C -0.060 4.060 9 C -0.191 4.191 10 C -0.009 4.009 11 N -0.286 5.286 12 N -0.253 5.253 13 C 0.120 3.880 14 C -0.121 4.121 15 C -0.115 4.115 16 C -0.114 4.114 17 C -0.130 4.130 18 C 0.074 3.926 19 C 0.174 3.826 20 H 0.090 0.910 21 N -0.738 5.738 22 C -0.219 4.219 23 H 0.071 0.929 24 C -0.055 4.055 25 N -0.979 5.979 26 Si 0.938 3.062 27 H -0.275 1.275 28 H -0.303 1.303 29 H -0.263 1.263 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.038 0.962 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.086 0.914 38 H 0.182 0.818 39 H 0.216 0.784 40 H 0.122 0.878 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.092 0.908 45 H 0.077 0.923 46 H 0.081 0.919 47 H 0.062 0.938 48 H 0.064 0.936 49 H 0.096 0.904 50 H 0.062 0.938 51 H 0.363 0.637 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.436 -9.586 -16.578 23.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.080 4.080 3 C -0.184 4.184 4 C -0.003 4.003 5 N -0.319 5.319 6 C 0.388 3.612 7 O -0.459 6.459 8 C -0.187 4.187 9 C -0.220 4.220 10 C -0.184 4.184 11 N -0.119 5.119 12 N -0.041 5.041 13 C 0.020 3.980 14 C -0.159 4.159 15 C -0.152 4.152 16 C -0.152 4.152 17 C -0.169 4.169 18 C -0.051 4.051 19 C 0.064 3.936 20 H 0.107 0.893 21 N -0.380 5.380 22 C -0.350 4.350 23 H 0.089 0.911 24 C -0.247 4.247 25 N -0.630 5.630 26 Si 0.767 3.233 27 H -0.201 1.201 28 H -0.230 1.230 29 H -0.188 1.188 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.105 0.895 38 H 0.199 0.801 39 H 0.233 0.767 40 H 0.140 0.860 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.110 0.890 45 H 0.096 0.904 46 H 0.100 0.900 47 H 0.081 0.919 48 H 0.083 0.917 49 H 0.114 0.886 50 H 0.080 0.920 51 H 0.197 0.803 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.346 -10.575 -17.812 24.641 hybrid contribution 1.509 1.236 0.438 1.999 sum -11.836 -9.339 -17.374 23.003 Atomic orbital electron populations 1.21651 0.90972 1.02240 1.03283 1.22088 0.97496 0.95343 0.93081 1.21593 1.00000 0.93983 1.02810 1.22461 1.00608 0.78819 0.98379 1.48051 1.70047 1.05875 1.07896 1.16700 0.76742 0.82748 0.84991 1.90670 1.54260 1.86072 1.14911 1.21364 1.15142 0.88648 0.93570 1.23119 1.06102 0.97502 0.95238 1.24155 1.05080 0.94013 0.95123 1.73057 1.19365 1.17464 1.01987 1.45959 1.48426 1.01452 1.08289 1.23229 0.98462 1.03449 0.72881 1.22843 0.96488 0.98551 0.98064 1.22314 0.94612 1.02602 0.95718 1.22070 0.97196 0.99604 0.96301 1.22471 0.95354 0.98954 1.00098 1.23460 1.01972 1.01501 0.78170 1.21490 0.85511 0.90152 0.96464 0.89255 1.42798 1.10697 1.75800 1.08753 1.19041 0.98524 1.29178 0.88247 0.91094 1.25312 0.99116 1.02601 0.97680 1.69844 1.18409 1.53999 1.20739 0.85681 0.78053 0.79494 0.80105 1.20083 1.23021 1.18834 0.90956 0.90899 0.92671 0.94291 0.90457 0.91791 0.92747 0.89535 0.80101 0.76696 0.86016 0.90773 0.90291 0.90327 0.88958 0.90408 0.89990 0.91884 0.91684 0.88580 0.91981 0.80258 0.93539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.44 8.59 71.98 0.62 -1.82 16 2 C -0.08 -2.00 0.84 -50.71 -0.04 -2.04 16 3 C -0.13 -3.20 8.22 71.98 0.59 -2.61 16 4 C 0.12 3.36 5.79 86.93 0.50 3.87 16 5 N -0.59 -17.87 3.31 -815.50 -2.70 -20.57 16 6 C 0.60 19.76 7.83 86.59 0.68 20.44 16 7 O -0.58 -20.91 14.70 -4.15 -0.06 -20.97 16 8 C -0.06 -1.83 6.91 40.79 0.28 -1.55 16 9 C -0.19 -5.13 9.50 22.66 0.22 -4.92 16 10 C -0.01 -0.21 12.03 85.18 1.02 0.81 16 11 N -0.29 -7.92 11.04 -57.14 -0.63 -8.55 16 12 N -0.25 -7.31 3.18 -308.68 -0.98 -8.29 16 13 C 0.12 3.02 3.54 46.19 0.16 3.18 16 14 C -0.12 -2.36 6.52 32.00 0.21 -2.15 16 15 C -0.11 -1.61 6.82 31.67 0.22 -1.40 16 16 C -0.11 -1.75 6.80 31.32 0.21 -1.54 16 17 C -0.13 -2.90 6.52 31.31 0.20 -2.70 16 18 C 0.07 2.19 4.49 86.73 0.39 2.58 16 19 C 0.17 5.52 2.88 46.18 0.13 5.65 16 20 H 0.09 2.80 7.99 -2.38 -0.02 2.78 16 21 N -0.74 -30.66 4.30 -317.34 -1.37 -32.03 16 22 C -0.22 -11.33 10.44 84.03 0.88 -10.46 16 23 H 0.07 3.95 8.06 -2.91 -0.02 3.92 16 24 C -0.06 -3.10 5.50 84.86 0.47 -2.63 16 25 N -0.98 -60.37 13.97 21.65 0.30 -60.07 16 26 Si 0.94 44.32 27.79 68.60 1.91 46.23 16 27 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 28 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 29 H -0.26 -11.54 6.45 99.48 0.64 -10.90 16 30 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.05 1.11 7.91 -2.39 -0.02 1.09 16 33 H 0.04 1.15 6.49 -2.38 -0.02 1.13 16 34 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.05 1.69 7.99 -2.39 -0.02 1.67 16 37 H 0.09 2.26 8.00 -2.39 -0.02 2.24 16 38 H 0.18 4.38 4.66 -2.91 -0.01 4.37 16 39 H 0.22 3.67 8.06 -2.91 -0.02 3.64 16 40 H 0.12 3.50 5.44 -2.39 -0.01 3.49 16 41 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 42 H 0.08 1.64 7.67 -2.39 -0.02 1.62 16 43 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 45 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.06 1.57 7.85 -2.39 -0.02 1.55 16 48 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 49 H 0.10 2.35 6.22 -2.39 -0.01 2.34 16 50 H 0.06 2.18 7.52 -2.39 -0.02 2.16 16 51 H 0.36 15.22 4.17 -92.71 -0.39 14.84 16 52 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 Total: -1.00 -68.23 399.92 3.68 -64.55 By element: Atomic # 1 Polarization: 36.52 SS G_CDS: 0.47 Total: 36.99 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: 6.74 Total: 2.72 kcal Atomic # 7 Polarization: -124.13 SS G_CDS: -5.37 Total: -129.51 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.06 Total: -20.97 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.91 Total: 46.23 kcal Total: -68.23 3.68 -64.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995864038.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.078 kcal (2) G-P(sol) polarization free energy of solvation -68.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds