Wall clock time and date at job start Wed Apr 1 2020 04:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34845 * 125.96684 * 2 1 4 4 N 1.36322 * 106.69007 * 179.97438 * 3 2 1 5 5 C 1.35417 * 107.39890 * 0.04580 * 4 3 2 6 6 N 1.30098 * 108.62665 * 359.93709 * 5 4 3 7 7 C 1.51036 * 123.98409 * 179.91829 * 5 4 3 8 8 C 1.53403 * 108.20958 * 344.03921 * 7 5 4 9 9 H 1.09000 * 109.50890 * 288.84002 * 8 7 5 10 10 C 1.50695 * 109.50956 * 168.75178 * 8 7 5 11 11 O 1.21283 * 119.99807 * 274.92195 * 10 8 7 12 12 N 1.34781 * 120.00263 * 94.92308 * 10 8 7 13 13 C 1.48414 * 127.82135 * 354.92755 * 12 10 8 14 14 C 1.54385 * 104.48452 * 219.60175 * 13 12 10 15 15 H 1.09006 * 110.34297 * 217.18114 * 14 13 12 16 16 N 1.46500 * 110.34094 * 95.03584 * 14 13 12 17 17 C 1.36934 * 120.00592 * 87.87483 * 16 14 13 18 18 H 1.07999 * 119.99687 * 359.97438 * 17 16 14 19 19 C 1.38809 * 120.00582 * 180.02562 * 17 16 14 20 20 N 1.31623 * 119.99805 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00205 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47366 * 89.99607 * 21 19 17 23 23 H 1.48502 * 109.46731 * 209.99994 * 21 19 17 24 24 H 1.48495 * 109.46950 * 329.99550 * 21 19 17 25 25 C 1.54279 * 105.05370 * 336.11176 * 14 13 12 26 26 C 1.52997 * 110.34564 * 118.92223 * 25 14 13 27 27 C 1.53008 * 110.34018 * 241.17791 * 25 14 13 28 28 C 1.48147 * 127.83701 * 174.93045 * 12 10 8 29 29 C 1.53140 * 109.24134 * 48.81726 * 8 7 5 30 30 C 1.46475 * 127.77457 * 180.08307 * 4 3 2 31 31 H 1.08992 * 109.47430 * 89.99458 * 1 2 3 32 32 H 1.09001 * 109.47559 * 210.00320 * 1 2 3 33 33 H 1.09002 * 109.46684 * 329.99764 * 1 2 3 34 34 H 1.08003 * 126.65598 * 359.96675 * 3 2 1 35 35 H 1.09004 * 109.71702 * 224.36322 * 7 5 4 36 36 H 1.08999 * 109.71975 * 103.71589 * 7 5 4 37 37 H 1.09007 * 110.44609 * 100.87435 * 13 12 10 38 38 H 1.09002 * 110.49737 * 338.35942 * 13 12 10 39 39 H 0.97009 * 119.99865 * 267.59961 * 16 14 13 40 40 H 0.96993 * 120.00023 * 180.02562 * 20 19 17 41 41 H 1.09003 * 109.47130 * 59.99576 * 26 25 14 42 42 H 1.08995 * 109.47100 * 179.97438 * 26 25 14 43 43 H 1.08996 * 109.47384 * 299.99883 * 26 25 14 44 44 H 1.09004 * 109.47022 * 60.00570 * 27 25 14 45 45 H 1.09008 * 109.47082 * 179.97438 * 27 25 14 46 46 H 1.08996 * 109.47136 * 300.00239 * 27 25 14 47 47 H 1.08998 * 110.40593 * 21.59995 * 28 12 10 48 48 H 1.09002 * 110.50163 * 259.22235 * 28 12 10 49 49 H 1.09007 * 109.46794 * 50.53476 * 29 8 7 50 50 H 1.09004 * 109.46725 * 170.51205 * 29 8 7 51 51 H 1.09000 * 109.57876 * 282.61552 * 30 4 3 52 52 H 1.09001 * 109.58428 * 43.03164 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2989 1.0914 0.0000 4 7 3.5857 0.6413 0.0006 5 6 3.5413 -0.7121 -0.0001 6 7 2.2956 -1.0870 0.0003 7 6 4.7654 -1.5969 -0.0016 8 6 5.9743 -0.7421 -0.4028 9 1 5.9068 -0.4900 -1.4611 10 6 7.2432 -1.5146 -0.1496 11 8 7.7502 -1.5036 0.9522 12 7 7.8146 -2.2178 -1.1474 13 6 7.2951 -2.4362 -2.5203 14 6 7.6403 -3.9078 -2.8343 15 1 7.9270 -4.0149 -3.8805 16 7 6.4997 -4.7749 -2.5286 17 6 5.5399 -5.0040 -3.4779 18 1 5.6235 -4.5451 -4.4520 19 6 4.4589 -5.8251 -3.1881 20 7 4.3567 -6.3839 -2.0008 21 14 3.1499 -6.1381 -4.4835 22 1 3.5228 -7.3307 -5.2860 23 1 1.8434 -6.3771 -3.8193 24 1 3.0429 -4.9554 -5.3749 25 6 8.8320 -4.2449 -1.9142 26 6 8.4626 -5.3828 -0.9606 27 6 10.0570 -4.6251 -2.7484 28 6 9.1035 -2.9478 -1.1223 29 6 5.9828 0.5427 0.4305 30 6 4.8149 1.4380 0.0025 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3634 -0.8899 0.5139 33 1 -0.3633 0.8900 0.5139 34 1 1.9764 2.1221 -0.0005 35 1 4.6331 -2.4065 -0.7194 36 1 4.9217 -2.0101 0.9949 37 1 7.7920 -1.7703 -3.2259 38 1 6.2160 -2.2845 -2.5487 39 1 6.4265 -5.1900 -1.6548 40 1 3.6015 -6.9580 -1.7983 41 1 8.1972 -6.2687 -1.5375 42 1 9.3136 -5.6094 -0.3184 43 1 7.6138 -5.0814 -0.3467 44 1 10.3309 -3.7900 -3.3933 45 1 10.8897 -4.8598 -2.0852 46 1 9.8234 -5.4959 -3.3610 47 1 9.3882 -3.1812 -0.0964 48 1 9.8836 -2.3619 -1.6084 49 1 5.8800 0.2917 1.4863 50 1 6.9227 1.0717 0.2729 51 1 5.0002 1.8260 -0.9991 52 1 4.7126 2.2659 0.7041 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995962258.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:23 Heat of formation + Delta-G solvation = 39.489646 kcal Electronic energy + Delta-G solvation = -32288.850961 eV Core-core repulsion = 28289.435242 eV Total energy + Delta-G solvation = -3999.415718 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.25462 -40.10151 -38.29454 -36.19666 -33.99066 -33.45561 -32.90235 -31.48538 -30.76108 -29.00317 -27.89037 -27.45161 -26.73065 -25.98829 -23.99179 -23.80355 -22.71209 -21.57028 -20.30510 -19.23305 -18.89414 -18.34998 -17.23416 -16.89131 -16.69643 -15.97271 -15.65520 -15.23994 -14.72899 -14.38562 -14.16945 -14.07908 -13.96865 -13.68724 -13.62311 -13.44802 -13.27647 -12.91480 -12.62006 -12.45131 -12.39482 -12.28721 -12.11919 -11.84830 -11.74423 -11.64738 -11.56092 -11.24341 -11.17682 -11.06641 -10.98671 -10.87039 -10.54406 -10.44353 -10.21947 -9.93783 -9.71319 -9.59439 -9.54197 -9.39163 -9.01863 -8.39115 -8.05502 -6.98489 -5.79053 -3.08942 2.12747 2.75253 2.80787 3.15667 3.26611 3.43845 3.49184 3.52350 4.24919 4.42288 4.47732 4.52447 4.57234 4.84321 4.91583 5.00461 5.06989 5.11977 5.16433 5.18681 5.26451 5.34316 5.41654 5.51237 5.58555 5.60182 5.69262 5.72804 5.77199 5.79255 5.82866 5.90292 5.91435 5.97669 6.01258 6.08539 6.17680 6.22780 6.23925 6.29583 6.33449 6.40017 6.44043 6.52747 6.63109 6.81897 6.92132 6.94649 7.27860 7.67819 7.84167 8.31977 8.36417 8.39067 9.51454 10.06446 10.40924 11.42772 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007969 B = 0.004754 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3512.898487 B = 5888.275747 C = 8714.133208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.004 4.004 3 C -0.063 4.063 4 N -0.460 5.460 5 C 0.226 3.774 6 N -0.478 5.478 7 C -0.023 4.023 8 C -0.104 4.104 9 H 0.095 0.905 10 C 0.546 3.454 11 O -0.551 6.551 12 N -0.608 5.608 13 C 0.068 3.932 14 C 0.175 3.825 15 H 0.067 0.933 16 N -0.715 5.715 17 C -0.251 4.251 18 H 0.069 0.931 19 C -0.003 4.003 20 N -0.925 5.925 21 Si 0.903 3.097 22 H -0.291 1.291 23 H -0.291 1.291 24 H -0.282 1.282 25 C -0.087 4.087 26 C -0.129 4.129 27 C -0.131 4.131 28 C 0.114 3.886 29 C -0.116 4.116 30 C 0.107 3.893 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.171 0.829 35 H 0.115 0.885 36 H 0.095 0.905 37 H 0.058 0.942 38 H 0.087 0.913 39 H 0.391 0.609 40 H 0.257 0.743 41 H 0.070 0.930 42 H 0.042 0.958 43 H 0.059 0.941 44 H 0.053 0.947 45 H 0.051 0.949 46 H 0.062 0.938 47 H 0.078 0.922 48 H 0.066 0.934 49 H 0.086 0.914 50 H 0.091 0.909 51 H 0.084 0.916 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.227 16.022 2.088 16.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.133 4.133 3 C -0.196 4.196 4 N -0.143 5.143 5 C -0.036 4.036 6 N -0.197 5.197 7 C -0.062 4.062 8 C -0.126 4.126 9 H 0.114 0.886 10 C 0.334 3.666 11 O -0.430 6.430 12 N -0.341 5.341 13 C -0.058 4.058 14 C 0.062 3.938 15 H 0.085 0.915 16 N -0.358 5.358 17 C -0.382 4.382 18 H 0.087 0.913 19 C -0.200 4.200 20 N -0.572 5.572 21 Si 0.734 3.266 22 H -0.218 1.218 23 H -0.217 1.217 24 H -0.208 1.208 25 C -0.089 4.089 26 C -0.186 4.186 27 C -0.189 4.189 28 C -0.009 4.009 29 C -0.154 4.154 30 C -0.015 4.015 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.188 0.812 35 H 0.133 0.867 36 H 0.113 0.887 37 H 0.076 0.924 38 H 0.105 0.895 39 H 0.228 0.772 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.062 0.938 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.081 0.919 47 H 0.096 0.904 48 H 0.084 0.916 49 H 0.105 0.895 50 H 0.109 0.891 51 H 0.102 0.898 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.143 15.349 2.623 16.399 hybrid contribution -0.617 0.661 -0.589 1.079 sum 4.526 16.010 2.034 16.761 Atomic orbital electron populations 1.19987 0.87909 1.02307 1.02035 1.20811 0.96448 0.88376 1.07649 1.22190 0.82951 1.00108 1.14329 1.45375 1.06351 1.07455 1.55165 1.23144 0.94764 0.81169 1.04556 1.70045 0.99676 1.30067 1.19882 1.20100 0.85236 0.95732 1.05136 1.21311 0.93602 0.95543 1.02097 0.88641 1.19765 0.84833 0.78834 0.83170 1.90674 1.65059 1.64471 1.22797 1.48954 1.22079 1.49822 1.13202 1.23718 1.00556 1.00421 0.81082 1.21152 0.87757 0.88279 0.96591 0.91497 1.42743 1.22499 1.54543 1.16016 1.19186 1.00441 1.24373 0.94203 0.91263 1.24707 0.98709 0.99943 0.96680 1.69639 1.31809 1.35559 1.20173 0.86265 0.81688 0.77890 0.80746 1.21795 1.21681 1.20797 1.21774 0.96287 0.94644 0.96209 1.21671 1.00344 0.98220 0.98396 1.21790 0.96303 1.01554 0.99263 1.22429 0.85339 0.91930 1.01153 1.21738 0.97634 0.94458 1.01551 1.21962 0.82255 0.94232 1.03071 0.91587 0.91219 0.91720 0.81184 0.86684 0.88721 0.92354 0.89475 0.77173 0.93327 0.91082 0.93849 0.92194 0.92835 0.92972 0.91907 0.90397 0.91577 0.89493 0.89070 0.89758 0.89003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.77 10.42 36.00 0.38 -0.40 16 2 C 0.00 -0.06 7.10 -82.72 -0.59 -0.64 16 3 C -0.06 -0.82 11.55 -16.76 -0.19 -1.01 16 4 N -0.46 -6.17 3.13 -113.76 -0.36 -6.52 16 5 C 0.23 3.82 7.65 -155.24 -1.19 2.63 16 6 N -0.48 -9.09 11.24 -6.89 -0.08 -9.17 16 7 C -0.02 -0.38 5.63 -27.51 -0.15 -0.53 16 8 C -0.10 -1.43 2.01 -91.49 -0.18 -1.61 16 9 H 0.10 1.24 7.00 -51.93 -0.36 0.87 16 10 C 0.55 8.81 6.88 -10.99 -0.08 8.73 16 11 O -0.55 -10.33 16.69 5.55 0.09 -10.23 16 12 N -0.61 -9.48 3.32 -169.09 -0.56 -10.04 16 13 C 0.07 1.07 6.32 -2.26 -0.01 1.05 16 14 C 0.17 3.08 3.33 -66.53 -0.22 2.86 16 15 H 0.07 1.17 7.67 -51.93 -0.40 0.77 16 16 N -0.72 -16.30 4.61 -52.07 -0.24 -16.54 16 17 C -0.25 -6.49 9.96 -15.06 -0.15 -6.64 16 18 H 0.07 1.74 7.83 -52.49 -0.41 1.32 16 19 C 0.00 -0.09 5.50 -17.43 -0.10 -0.18 16 20 N -0.92 -27.13 13.06 55.49 0.72 -26.41 16 21 Si 0.90 22.10 29.55 -169.99 -5.02 17.08 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 C -0.09 -1.32 1.03 -153.11 -0.16 -1.47 16 26 C -0.13 -2.18 7.09 37.16 0.26 -1.92 16 27 C -0.13 -1.63 8.26 37.16 0.31 -1.32 16 28 C 0.11 1.64 6.16 -2.41 -0.01 1.63 16 29 C -0.12 -1.27 4.76 -26.53 -0.13 -1.40 16 30 C 0.11 1.01 6.98 -3.92 -0.03 0.99 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.17 1.54 8.06 -52.48 -0.42 1.11 16 35 H 0.11 2.23 8.14 -51.93 -0.42 1.81 16 36 H 0.09 1.63 8.11 -51.93 -0.42 1.20 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 1.53 7.08 -51.93 -0.37 1.16 16 39 H 0.39 9.67 5.04 -40.82 -0.21 9.47 16 40 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.07 1.34 7.74 -51.93 -0.40 0.94 16 42 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 1.17 6.99 -51.93 -0.36 0.80 16 44 H 0.05 0.58 8.10 -51.93 -0.42 0.16 16 45 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 46 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.08 1.19 7.57 -51.93 -0.39 0.80 16 48 H 0.07 0.81 7.83 -51.93 -0.41 0.41 16 49 H 0.09 1.06 8.10 -51.92 -0.42 0.64 16 50 H 0.09 0.86 8.12 -51.93 -0.42 0.44 16 51 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 52 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 408.52 15.07 6.16 6.16 Total: -1.00 -33.01 408.52 -10.31 -43.32 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: -8.78 Total: 11.61 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: -2.24 Total: 0.75 kcal Atomic # 7 Polarization: -68.17 SS G_CDS: -0.51 Total: -68.68 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.01 -10.31 -43.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995962258.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.805 kcal (2) G-P(sol) polarization free energy of solvation -33.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds