Wall clock time and date at job start Wed Apr 1 2020 04:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34845 * 125.96684 * 2 1 4 4 N 1.36322 * 106.69007 * 179.97438 * 3 2 1 5 5 C 1.35417 * 107.39890 * 0.04580 * 4 3 2 6 6 N 1.30098 * 108.62665 * 359.93709 * 5 4 3 7 7 C 1.51036 * 123.98409 * 179.91829 * 5 4 3 8 8 C 1.53403 * 108.20958 * 344.03921 * 7 5 4 9 9 H 1.09000 * 109.50890 * 288.84002 * 8 7 5 10 10 C 1.50695 * 109.50956 * 168.75178 * 8 7 5 11 11 O 1.21283 * 119.99807 * 274.92195 * 10 8 7 12 12 N 1.34781 * 120.00263 * 94.92308 * 10 8 7 13 13 C 1.48414 * 127.82135 * 354.92755 * 12 10 8 14 14 C 1.54385 * 104.48452 * 219.60175 * 13 12 10 15 15 H 1.09006 * 110.34297 * 217.18114 * 14 13 12 16 16 N 1.46500 * 110.34094 * 95.03584 * 14 13 12 17 17 C 1.36934 * 120.00592 * 87.87483 * 16 14 13 18 18 H 1.07999 * 119.99687 * 359.97438 * 17 16 14 19 19 C 1.38809 * 120.00582 * 180.02562 * 17 16 14 20 20 N 1.31623 * 119.99805 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00205 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47366 * 89.99607 * 21 19 17 23 23 H 1.48502 * 109.46731 * 209.99994 * 21 19 17 24 24 H 1.48495 * 109.46950 * 329.99550 * 21 19 17 25 25 C 1.54279 * 105.05370 * 336.11176 * 14 13 12 26 26 C 1.52997 * 110.34564 * 118.92223 * 25 14 13 27 27 C 1.53008 * 110.34018 * 241.17791 * 25 14 13 28 28 C 1.48147 * 127.83701 * 174.93045 * 12 10 8 29 29 C 1.53140 * 109.24134 * 48.81726 * 8 7 5 30 30 C 1.46475 * 127.77457 * 180.08307 * 4 3 2 31 31 H 1.08992 * 109.47430 * 89.99458 * 1 2 3 32 32 H 1.09001 * 109.47559 * 210.00320 * 1 2 3 33 33 H 1.09002 * 109.46684 * 329.99764 * 1 2 3 34 34 H 1.08003 * 126.65598 * 359.96675 * 3 2 1 35 35 H 1.09004 * 109.71702 * 224.36322 * 7 5 4 36 36 H 1.08999 * 109.71975 * 103.71589 * 7 5 4 37 37 H 1.09007 * 110.44609 * 100.87435 * 13 12 10 38 38 H 1.09002 * 110.49737 * 338.35942 * 13 12 10 39 39 H 0.97009 * 119.99865 * 267.59961 * 16 14 13 40 40 H 0.96993 * 120.00023 * 180.02562 * 20 19 17 41 41 H 1.09003 * 109.47130 * 59.99576 * 26 25 14 42 42 H 1.08995 * 109.47100 * 179.97438 * 26 25 14 43 43 H 1.08996 * 109.47384 * 299.99883 * 26 25 14 44 44 H 1.09004 * 109.47022 * 60.00570 * 27 25 14 45 45 H 1.09008 * 109.47082 * 179.97438 * 27 25 14 46 46 H 1.08996 * 109.47136 * 300.00239 * 27 25 14 47 47 H 1.08998 * 110.40593 * 21.59995 * 28 12 10 48 48 H 1.09002 * 110.50163 * 259.22235 * 28 12 10 49 49 H 1.09007 * 109.46794 * 50.53476 * 29 8 7 50 50 H 1.09004 * 109.46725 * 170.51205 * 29 8 7 51 51 H 1.09000 * 109.57876 * 282.61552 * 30 4 3 52 52 H 1.09001 * 109.58428 * 43.03164 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2989 1.0914 0.0000 4 7 3.5857 0.6413 0.0006 5 6 3.5413 -0.7121 -0.0001 6 7 2.2956 -1.0870 0.0003 7 6 4.7654 -1.5969 -0.0016 8 6 5.9743 -0.7421 -0.4028 9 1 5.9068 -0.4900 -1.4611 10 6 7.2432 -1.5146 -0.1496 11 8 7.7502 -1.5036 0.9522 12 7 7.8146 -2.2178 -1.1474 13 6 7.2951 -2.4362 -2.5203 14 6 7.6403 -3.9078 -2.8343 15 1 7.9270 -4.0149 -3.8805 16 7 6.4997 -4.7749 -2.5286 17 6 5.5399 -5.0040 -3.4779 18 1 5.6235 -4.5451 -4.4520 19 6 4.4589 -5.8251 -3.1881 20 7 4.3567 -6.3839 -2.0008 21 14 3.1499 -6.1381 -4.4835 22 1 3.5228 -7.3307 -5.2860 23 1 1.8434 -6.3771 -3.8193 24 1 3.0429 -4.9554 -5.3749 25 6 8.8320 -4.2449 -1.9142 26 6 8.4626 -5.3828 -0.9606 27 6 10.0570 -4.6251 -2.7484 28 6 9.1035 -2.9478 -1.1223 29 6 5.9828 0.5427 0.4305 30 6 4.8149 1.4380 0.0025 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3634 -0.8899 0.5139 33 1 -0.3633 0.8900 0.5139 34 1 1.9764 2.1221 -0.0005 35 1 4.6331 -2.4065 -0.7194 36 1 4.9217 -2.0101 0.9949 37 1 7.7920 -1.7703 -3.2259 38 1 6.2160 -2.2845 -2.5487 39 1 6.4265 -5.1900 -1.6548 40 1 3.6015 -6.9580 -1.7983 41 1 8.1972 -6.2687 -1.5375 42 1 9.3136 -5.6094 -0.3184 43 1 7.6138 -5.0814 -0.3467 44 1 10.3309 -3.7900 -3.3933 45 1 10.8897 -4.8598 -2.0852 46 1 9.8234 -5.4959 -3.3610 47 1 9.3882 -3.1812 -0.0964 48 1 9.8836 -2.3619 -1.6084 49 1 5.8800 0.2917 1.4863 50 1 6.9227 1.0717 0.2729 51 1 5.0002 1.8260 -0.9991 52 1 4.7126 2.2659 0.7041 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995962258.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:22 Heat of formation + Delta-G solvation = 19.364063 kcal Electronic energy + Delta-G solvation = -32289.723672 eV Core-core repulsion = 28289.435242 eV Total energy + Delta-G solvation = -4000.288429 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.35932 -41.39577 -39.60998 -37.31089 -35.73221 -34.76191 -34.14670 -32.60103 -32.48868 -30.09262 -29.36717 -28.55959 -28.11795 -27.09955 -25.68244 -24.98433 -23.84993 -22.99983 -21.41307 -20.42993 -20.14703 -19.64246 -19.05246 -18.14570 -17.78479 -17.19710 -16.89465 -16.64200 -16.18923 -15.74006 -15.65958 -15.26245 -15.18509 -15.13021 -14.75811 -14.71241 -14.50384 -13.94631 -13.89631 -13.84141 -13.60134 -13.36484 -13.23151 -13.16983 -12.97884 -12.85116 -12.81358 -12.68970 -12.66207 -12.48373 -12.33045 -12.16539 -12.11501 -12.08439 -11.81694 -11.40607 -11.33030 -10.96578 -10.91392 -10.80470 -10.50212 -9.75019 -9.14230 -8.89883 -7.90862 -5.17307 1.04548 1.45226 1.46107 1.48248 1.54842 1.82955 1.96497 2.07175 2.57498 3.13725 3.37649 3.42564 3.44179 3.50241 3.66559 3.83840 3.86858 3.98539 4.02170 4.07663 4.21556 4.22962 4.30708 4.38305 4.42137 4.46060 4.48851 4.53927 4.65719 4.69153 4.72276 4.76534 4.81745 4.86033 4.88136 4.92746 4.97290 5.00056 5.03318 5.05705 5.14658 5.16809 5.31216 5.34878 5.35521 5.43121 5.54879 5.62740 5.87731 6.22676 6.30724 6.55519 7.08011 7.18650 7.38966 8.16728 8.37330 9.32453 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007969 B = 0.004754 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3512.898487 B = 5888.275747 C = 8714.133208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.044 4.044 3 C -0.036 4.036 4 N -0.451 5.451 5 C 0.196 3.804 6 N -0.535 5.535 7 C -0.011 4.011 8 C -0.092 4.092 9 H 0.107 0.893 10 C 0.541 3.459 11 O -0.580 6.580 12 N -0.611 5.611 13 C 0.079 3.921 14 C 0.163 3.837 15 H 0.078 0.922 16 N -0.728 5.728 17 C -0.231 4.231 18 H 0.081 0.919 19 C -0.071 4.071 20 N -0.967 5.967 21 Si 0.958 3.042 22 H -0.287 1.287 23 H -0.308 1.308 24 H -0.268 1.268 25 C -0.080 4.080 26 C -0.121 4.121 27 C -0.125 4.125 28 C 0.115 3.885 29 C -0.109 4.109 30 C 0.105 3.895 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.098 0.902 34 H 0.220 0.780 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.100 0.900 38 H 0.063 0.937 39 H 0.377 0.623 40 H 0.246 0.754 41 H 0.045 0.955 42 H 0.066 0.934 43 H 0.022 0.978 44 H 0.079 0.921 45 H 0.070 0.930 46 H 0.050 0.950 47 H 0.067 0.933 48 H 0.103 0.897 49 H 0.069 0.931 50 H 0.116 0.884 51 H 0.112 0.888 52 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.096 20.231 0.516 21.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.173 4.173 3 C -0.169 4.169 4 N -0.134 5.134 5 C -0.067 4.067 6 N -0.256 5.256 7 C -0.051 4.051 8 C -0.114 4.114 9 H 0.126 0.874 10 C 0.330 3.670 11 O -0.461 6.461 12 N -0.342 5.342 13 C -0.047 4.047 14 C 0.053 3.947 15 H 0.095 0.905 16 N -0.370 5.370 17 C -0.363 4.363 18 H 0.099 0.901 19 C -0.263 4.263 20 N -0.618 5.618 21 Si 0.789 3.211 22 H -0.214 1.214 23 H -0.235 1.235 24 H -0.193 1.193 25 C -0.082 4.082 26 C -0.178 4.178 27 C -0.182 4.182 28 C -0.007 4.007 29 C -0.147 4.147 30 C -0.015 4.015 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.117 0.883 34 H 0.236 0.764 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.118 0.882 38 H 0.082 0.918 39 H 0.212 0.788 40 H 0.055 0.945 41 H 0.064 0.936 42 H 0.085 0.915 43 H 0.041 0.959 44 H 0.097 0.903 45 H 0.089 0.911 46 H 0.069 0.931 47 H 0.085 0.915 48 H 0.121 0.879 49 H 0.088 0.912 50 H 0.135 0.865 51 H 0.130 0.870 52 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.085 19.603 0.996 20.868 hybrid contribution -1.129 -0.621 -0.079 1.290 sum 5.956 18.983 0.917 19.916 Atomic orbital electron populations 1.20050 0.86215 1.03103 1.02469 1.21457 0.97974 0.88453 1.09391 1.22895 0.81997 1.01390 1.10663 1.45611 1.08012 1.06360 1.53444 1.22857 0.93961 0.82942 1.06918 1.69940 1.01391 1.32985 1.21272 1.19774 0.87409 0.95401 1.02490 1.21272 0.90755 0.96063 1.03341 0.87442 1.20167 0.85192 0.78874 0.82729 1.90654 1.65972 1.65704 1.23782 1.49049 1.22540 1.49520 1.13115 1.23522 0.99705 0.99522 0.81903 1.21500 0.86979 0.88504 0.97763 0.90461 1.42939 1.23602 1.55543 1.14900 1.19600 1.00060 1.21860 0.94737 0.90109 1.25398 1.01246 1.01403 0.98284 1.69805 1.32254 1.37469 1.22236 0.85352 0.78776 0.78174 0.78790 1.21385 1.23525 1.19317 1.21740 0.96507 0.94313 0.95650 1.21564 0.99765 0.98085 0.98432 1.21749 0.95104 1.02075 0.99292 1.22558 0.85565 0.91710 1.00834 1.21732 0.99817 0.93279 0.99898 1.22341 0.79607 0.93873 1.05706 0.91282 0.93018 0.88312 0.76352 0.91081 0.91013 0.88177 0.91829 0.78767 0.94534 0.93607 0.91510 0.95856 0.90257 0.91084 0.93052 0.91473 0.87894 0.91180 0.86536 0.87018 0.85353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.42 10.42 71.23 0.74 -0.68 16 2 C -0.04 -1.35 7.10 41.40 0.29 -1.06 16 3 C -0.04 -0.83 11.55 83.22 0.96 0.14 16 4 N -0.45 -11.21 3.13 -513.82 -1.61 -12.82 16 5 C 0.20 6.84 7.65 138.23 1.06 7.89 16 6 N -0.54 -21.43 11.24 -175.70 -1.98 -23.41 16 7 C -0.01 -0.40 5.63 30.09 0.17 -0.23 16 8 C -0.09 -2.53 2.01 -11.36 -0.02 -2.55 16 9 H 0.11 2.65 7.00 -2.39 -0.02 2.63 16 10 C 0.54 17.40 6.88 87.65 0.60 18.00 16 11 O -0.58 -21.85 16.69 -3.04 -0.05 -21.90 16 12 N -0.61 -18.40 3.32 -807.26 -2.68 -21.08 16 13 C 0.08 2.34 6.32 86.48 0.55 2.89 16 14 C 0.16 5.59 3.33 45.90 0.15 5.74 16 15 H 0.08 2.52 7.67 -2.38 -0.02 2.51 16 16 N -0.73 -34.30 4.61 -318.66 -1.47 -35.77 16 17 C -0.23 -12.17 9.96 84.03 0.84 -11.34 16 18 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 19 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 20 N -0.97 -60.26 13.06 21.65 0.28 -59.98 16 21 Si 0.96 46.99 29.55 68.60 2.03 49.02 16 22 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 23 H -0.31 -15.82 7.11 99.48 0.71 -15.11 16 24 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 25 C -0.08 -2.32 1.03 -51.28 -0.05 -2.37 16 26 C -0.12 -4.22 7.09 71.98 0.51 -3.71 16 27 C -0.12 -2.69 8.26 71.98 0.59 -2.10 16 28 C 0.12 3.07 6.16 86.53 0.53 3.60 16 29 C -0.11 -2.16 4.76 30.73 0.15 -2.01 16 30 C 0.10 1.57 6.98 86.47 0.60 2.17 16 31 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.22 2.71 8.06 -2.91 -0.02 2.69 16 35 H 0.07 3.10 8.14 -2.38 -0.02 3.08 16 36 H 0.07 2.78 8.11 -2.39 -0.02 2.76 16 37 H 0.10 2.22 8.14 -2.38 -0.02 2.20 16 38 H 0.06 2.23 7.08 -2.39 -0.02 2.22 16 39 H 0.38 19.88 5.04 -92.70 -0.47 19.41 16 40 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 41 H 0.04 1.80 7.74 -2.39 -0.02 1.78 16 42 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.02 0.96 6.99 -2.39 -0.02 0.94 16 44 H 0.08 1.34 8.10 -2.38 -0.02 1.32 16 45 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 46 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.07 1.97 7.57 -2.39 -0.02 1.95 16 48 H 0.10 2.05 7.83 -2.39 -0.02 2.03 16 49 H 0.07 1.65 8.10 -2.38 -0.02 1.63 16 50 H 0.12 1.76 8.12 -2.38 -0.02 1.75 16 51 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 52 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -79.60 408.52 3.11 -76.49 By element: Atomic # 1 Polarization: 38.22 SS G_CDS: 0.44 Total: 38.66 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: 8.14 Total: 10.79 kcal Atomic # 7 Polarization: -145.60 SS G_CDS: -7.45 Total: -153.06 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.05 Total: -21.90 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Total: -79.60 3.11 -76.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995962258.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.858 kcal (2) G-P(sol) polarization free energy of solvation -79.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds