Wall clock time and date at job start Wed Apr 1 2020 04:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34851 * 125.96265 * 2 1 4 4 N 1.36317 * 106.68916 * 179.86510 * 3 2 1 5 5 C 1.35415 * 107.39697 * 0.35488 * 4 3 2 6 6 N 1.30091 * 108.62951 * 359.81789 * 5 4 3 7 7 C 1.51042 * 123.98354 * 179.82692 * 5 4 3 8 8 C 1.53398 * 108.21088 * 15.94125 * 7 5 4 9 9 H 1.08991 * 109.51283 * 71.15335 * 8 7 5 10 10 C 1.50706 * 109.51076 * 191.24963 * 8 7 5 11 11 O 1.21282 * 119.99886 * 86.15494 * 10 8 7 12 12 N 1.34766 * 120.00024 * 266.15445 * 10 8 7 13 13 C 1.47025 * 125.65019 * 5.02146 * 12 10 8 14 14 C 1.54319 * 107.27435 * 181.01931 * 13 12 10 15 15 H 1.09001 * 110.71937 * 140.73185 * 14 13 12 16 16 N 1.46498 * 110.72355 * 263.82881 * 14 13 12 17 17 C 1.36939 * 120.00195 * 273.54510 * 16 14 13 18 18 H 1.08003 * 119.99744 * 0.02562 * 17 16 14 19 19 C 1.38804 * 119.99869 * 179.97438 * 17 16 14 20 20 N 1.31623 * 120.00368 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00025 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47153 * 59.99718 * 21 19 17 23 23 H 1.48496 * 109.47326 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46972 * 300.00499 * 21 19 17 25 25 C 1.55157 * 102.94331 * 22.19590 * 14 13 12 26 26 C 1.52999 * 111.00379 * 82.56747 * 25 14 13 27 27 C 1.52998 * 111.00593 * 206.38688 * 25 14 13 28 28 C 1.47426 * 125.65104 * 184.71163 * 12 10 8 29 29 C 1.53155 * 109.23823 * 311.17552 * 8 7 5 30 30 C 1.46479 * 127.77973 * 180.02562 * 4 3 2 31 31 H 1.09002 * 109.47317 * 269.71714 * 1 2 3 32 32 H 1.09002 * 109.47067 * 149.71335 * 1 2 3 33 33 H 1.08997 * 109.47213 * 29.71864 * 1 2 3 34 34 H 1.08000 * 126.65966 * 0.02562 * 3 2 1 35 35 H 1.08997 * 109.72175 * 135.62073 * 7 5 4 36 36 H 1.09001 * 109.71487 * 256.26341 * 7 5 4 37 37 H 1.09003 * 109.88456 * 300.44079 * 13 12 10 38 38 H 1.09009 * 109.88268 * 61.44753 * 13 12 10 39 39 H 0.96997 * 119.99873 * 93.54395 * 16 14 13 40 40 H 0.96997 * 120.00136 * 180.02562 * 20 19 17 41 41 H 1.09000 * 109.47362 * 60.00791 * 26 25 14 42 42 H 1.09008 * 109.47050 * 180.02562 * 26 25 14 43 43 H 1.08996 * 109.47629 * 300.00158 * 26 25 14 44 44 H 1.08992 * 109.47447 * 59.99358 * 27 25 14 45 45 H 1.08995 * 109.46912 * 179.97438 * 27 25 14 46 46 H 1.09002 * 109.46801 * 299.99596 * 27 25 14 47 47 H 1.08998 * 110.37033 * 274.74990 * 28 12 10 48 48 H 1.08996 * 110.36573 * 37.06884 * 28 12 10 49 49 H 1.08999 * 109.46915 * 189.49674 * 29 8 7 50 50 H 1.09008 * 109.46537 * 309.48703 * 29 8 7 51 51 H 1.09001 * 109.58170 * 77.70079 * 30 4 3 52 52 H 1.09002 * 109.69554 * 317.35510 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2989 1.0915 0.0000 4 7 3.5856 0.6415 0.0031 5 6 3.5413 -0.7119 -0.0031 6 7 2.2956 -1.0869 -0.0058 7 6 4.7654 -1.5967 -0.0060 8 6 5.9743 -0.7438 0.3992 9 1 5.9069 -0.4967 1.4586 10 6 7.2433 -1.5151 0.1421 11 8 7.7609 -1.4829 -0.9543 12 7 7.8029 -2.2404 1.1305 13 6 7.2306 -2.4513 2.4682 14 6 8.2289 -3.3200 3.2621 15 1 8.2940 -2.9843 4.2971 16 7 7.8492 -4.7335 3.2005 17 6 6.9557 -5.2425 4.1049 18 1 6.5306 -4.6017 4.8633 19 6 6.5955 -6.5818 4.0462 20 7 7.1132 -7.3626 3.1216 21 14 5.3762 -7.2760 5.2794 22 1 4.0852 -6.5517 5.1604 23 1 5.1617 -8.7195 5.0046 24 1 5.9127 -7.1086 6.6539 25 6 9.5684 -3.0784 2.5174 26 6 10.2322 -1.7830 2.9888 27 6 10.5136 -4.2694 2.6885 28 6 9.0874 -2.9592 1.0473 29 6 5.9827 0.5451 -0.4281 30 6 4.8148 1.4382 0.0048 31 1 -0.3634 -0.0051 1.0277 32 1 -0.3633 -0.8874 -0.5183 33 1 -0.3633 0.8925 -0.5094 34 1 1.9763 2.1222 0.0004 35 1 4.6333 -2.4097 0.7077 36 1 4.9216 -2.0050 -1.0045 37 1 7.0940 -1.4925 2.9684 38 1 6.2729 -2.9654 2.3849 39 1 8.2306 -5.3090 2.5192 40 1 6.8612 -8.2984 3.0804 41 1 10.4335 -1.8462 4.0582 42 1 11.1689 -1.6379 2.4505 43 1 9.5671 -0.9419 2.7934 44 1 10.0452 -5.1662 2.2832 45 1 11.4444 -4.0738 2.1563 46 1 10.7243 -4.4166 3.7478 47 1 8.9414 -3.9479 0.6122 48 1 9.8048 -2.3872 0.4590 49 1 6.9227 1.0733 -0.2682 50 1 5.8795 0.2990 -1.4850 51 1 5.0004 1.8214 1.0082 52 1 4.7140 2.2708 -0.6914 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995962259.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:27 Heat of formation + Delta-G solvation = 31.119340 kcal Electronic energy + Delta-G solvation = -31724.066474 eV Core-core repulsion = 27724.287792 eV Total energy + Delta-G solvation = -3999.778682 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.43557 -40.22246 -38.34476 -36.31975 -34.00987 -33.56128 -33.00289 -31.64695 -30.79573 -29.15210 -27.99961 -27.63374 -26.75076 -26.10493 -24.19159 -23.84287 -22.78268 -21.54897 -20.46765 -19.34791 -19.00111 -18.52818 -17.29990 -17.03318 -16.78857 -16.09334 -15.67942 -15.26528 -14.80555 -14.49547 -14.31174 -14.19570 -14.05665 -13.89730 -13.81749 -13.44296 -13.11580 -13.08109 -12.77154 -12.57295 -12.51078 -12.43636 -12.24557 -11.91013 -11.85625 -11.80410 -11.73570 -11.58051 -11.29860 -11.24392 -11.01924 -10.89375 -10.60747 -10.49428 -10.28357 -9.93894 -9.88917 -9.71447 -9.61594 -9.57219 -9.01084 -8.31390 -8.23751 -7.08795 -5.85027 -3.15559 1.95510 2.63370 2.69772 3.05593 3.15270 3.40725 3.46083 3.46786 4.11866 4.26513 4.34415 4.40254 4.51312 4.71336 4.78796 4.87013 4.97282 5.01559 5.04184 5.13261 5.17592 5.21030 5.26611 5.41818 5.47633 5.55266 5.57648 5.62797 5.63947 5.69608 5.72187 5.81696 5.84900 5.87852 5.90606 5.97696 6.07233 6.14288 6.16991 6.23903 6.25419 6.30764 6.35118 6.52163 6.58341 6.73148 6.74179 6.87304 7.09284 7.62109 7.79218 8.10698 8.30409 8.33077 9.44833 9.98399 10.33009 11.36798 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008898 B = 0.003622 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3146.082683 B = 7727.925789 C =10159.953395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.004 4.004 3 C -0.060 4.060 4 N -0.457 5.457 5 C 0.222 3.778 6 N -0.483 5.483 7 C -0.022 4.022 8 C -0.106 4.106 9 H 0.097 0.903 10 C 0.534 3.466 11 O -0.550 6.550 12 N -0.600 5.600 13 C 0.069 3.931 14 C 0.180 3.820 15 H 0.070 0.930 16 N -0.711 5.711 17 C -0.250 4.250 18 H 0.071 0.929 19 C -0.005 4.005 20 N -0.928 5.928 21 Si 0.906 3.094 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.089 4.089 26 C -0.129 4.129 27 C -0.126 4.126 28 C 0.120 3.880 29 C -0.116 4.116 30 C 0.106 3.894 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.172 0.828 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.053 0.947 38 H 0.079 0.921 39 H 0.387 0.613 40 H 0.257 0.743 41 H 0.058 0.942 42 H 0.053 0.947 43 H 0.051 0.949 44 H 0.070 0.930 45 H 0.045 0.955 46 H 0.060 0.940 47 H 0.071 0.929 48 H 0.069 0.931 49 H 0.093 0.907 50 H 0.087 0.913 51 H 0.086 0.914 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.512 19.916 -4.475 20.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.133 4.133 3 C -0.192 4.192 4 N -0.141 5.141 5 C -0.041 4.041 6 N -0.202 5.202 7 C -0.061 4.061 8 C -0.128 4.128 9 H 0.115 0.885 10 C 0.322 3.678 11 O -0.429 6.429 12 N -0.332 5.332 13 C -0.057 4.057 14 C 0.067 3.933 15 H 0.088 0.912 16 N -0.352 5.352 17 C -0.381 4.381 18 H 0.089 0.911 19 C -0.202 4.202 20 N -0.575 5.575 21 Si 0.736 3.264 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.212 1.212 25 C -0.090 4.090 26 C -0.187 4.187 27 C -0.183 4.183 28 C -0.002 4.002 29 C -0.154 4.154 30 C -0.016 4.016 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.190 0.810 35 H 0.124 0.876 36 H 0.115 0.885 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.223 0.777 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.089 0.911 45 H 0.064 0.936 46 H 0.079 0.921 47 H 0.089 0.911 48 H 0.087 0.913 49 H 0.111 0.889 50 H 0.105 0.895 51 H 0.104 0.896 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.548 19.184 -4.965 19.877 hybrid contribution -0.462 0.319 0.542 0.781 sum -2.010 19.504 -4.423 20.100 Atomic orbital electron populations 1.19994 0.87778 1.02404 1.02085 1.20805 0.96462 0.88321 1.07729 1.22244 0.82874 1.00245 1.13843 1.45363 1.06477 1.07431 1.54795 1.23091 0.94658 0.81379 1.04961 1.69986 0.99653 1.30309 1.20249 1.20061 0.85624 0.95633 1.04822 1.21339 0.93545 0.95651 1.02240 0.88501 1.19810 0.85213 0.79297 0.83475 1.90683 1.64338 1.64906 1.22968 1.48433 1.22233 1.48588 1.13932 1.23360 1.00667 0.99484 0.82213 1.21201 0.89313 0.86602 0.96140 0.91235 1.42442 1.51911 1.03404 1.37463 1.19149 1.17636 0.93066 1.08199 0.91106 1.24726 1.00292 0.96390 0.98747 1.69638 1.46750 1.05849 1.35271 0.86302 0.81197 0.78109 0.80755 1.21118 1.21663 1.21219 1.22048 0.96435 0.96200 0.94358 1.21674 0.99765 0.96118 1.01096 1.21577 0.97243 0.97304 1.02206 1.22335 0.84363 0.96766 0.96723 1.21740 0.97725 0.94364 1.01537 1.21999 0.82101 0.94285 1.03257 0.91537 0.91234 0.91605 0.81045 0.87638 0.88517 0.92856 0.90279 0.77713 0.93279 0.92271 0.92818 0.92975 0.91148 0.93621 0.92050 0.91091 0.91257 0.88862 0.89459 0.89607 0.88867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.65 10.42 36.00 0.38 -0.27 16 2 C 0.00 -0.05 7.10 -82.72 -0.59 -0.64 16 3 C -0.06 -0.66 11.55 -16.76 -0.19 -0.86 16 4 N -0.46 -5.31 3.13 -113.75 -0.36 -5.67 16 5 C 0.22 3.20 7.65 -155.25 -1.19 2.02 16 6 N -0.48 -7.87 11.24 -6.89 -0.08 -7.95 16 7 C -0.02 -0.31 5.63 -27.51 -0.15 -0.46 16 8 C -0.11 -1.29 2.16 -91.48 -0.20 -1.49 16 9 H 0.10 1.10 6.93 -51.93 -0.36 0.74 16 10 C 0.53 8.18 6.83 -10.99 -0.07 8.11 16 11 O -0.55 -9.96 16.72 5.56 0.09 -9.86 16 12 N -0.60 -9.36 3.31 -170.38 -0.56 -9.92 16 13 C 0.07 1.09 5.63 -3.07 -0.02 1.07 16 14 C 0.18 3.14 2.86 -66.10 -0.19 2.95 16 15 H 0.07 1.21 8.03 -51.93 -0.42 0.79 16 16 N -0.71 -16.03 4.61 -51.66 -0.24 -16.27 16 17 C -0.25 -6.40 9.98 -15.06 -0.15 -6.56 16 18 H 0.07 1.76 7.83 -52.48 -0.41 1.34 16 19 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 20 N -0.93 -26.78 13.06 55.49 0.72 -26.06 16 21 Si 0.91 21.66 29.55 -169.99 -5.02 16.64 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 25 C -0.09 -1.31 0.83 -152.24 -0.13 -1.43 16 26 C -0.13 -1.55 8.59 37.16 0.32 -1.23 16 27 C -0.13 -1.91 8.22 37.16 0.31 -1.60 16 28 C 0.12 1.90 5.80 -2.41 -0.01 1.88 16 29 C -0.12 -1.13 4.75 -26.51 -0.13 -1.25 16 30 C 0.11 0.86 6.98 -3.92 -0.03 0.83 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.11 1.59 8.14 -51.93 -0.42 1.16 16 36 H 0.10 1.39 8.11 -51.93 -0.42 0.97 16 37 H 0.05 0.71 7.63 -51.93 -0.40 0.32 16 38 H 0.08 1.44 8.05 -51.92 -0.42 1.02 16 39 H 0.39 9.43 6.10 -40.82 -0.25 9.18 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 43 H 0.05 0.61 7.91 -51.93 -0.41 0.20 16 44 H 0.07 1.25 6.38 -51.93 -0.33 0.92 16 45 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.07 1.25 7.99 -51.93 -0.41 0.84 16 48 H 0.07 1.04 8.00 -51.93 -0.42 0.63 16 49 H 0.09 0.80 8.12 -51.93 -0.42 0.38 16 50 H 0.09 0.96 8.10 -51.92 -0.42 0.54 16 51 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 52 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 410.39 15.07 6.18 6.18 Total: -1.00 -32.36 410.39 -10.27 -42.63 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -8.87 Total: 9.43 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -2.14 Total: 0.84 kcal Atomic # 7 Polarization: -65.35 SS G_CDS: -0.51 Total: -65.86 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.36 -10.27 -42.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995962259.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.748 kcal (2) G-P(sol) polarization free energy of solvation -32.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds