Wall clock time and date at job start Wed Apr 1 2020 04:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34851 * 125.96265 * 2 1 4 4 N 1.36317 * 106.68916 * 179.86510 * 3 2 1 5 5 C 1.35415 * 107.39697 * 0.35488 * 4 3 2 6 6 N 1.30091 * 108.62951 * 359.81789 * 5 4 3 7 7 C 1.51042 * 123.98354 * 179.82692 * 5 4 3 8 8 C 1.53398 * 108.21088 * 15.94125 * 7 5 4 9 9 H 1.08991 * 109.51283 * 71.15335 * 8 7 5 10 10 C 1.50706 * 109.51076 * 191.24963 * 8 7 5 11 11 O 1.21282 * 119.99886 * 86.15494 * 10 8 7 12 12 N 1.34766 * 120.00024 * 266.15445 * 10 8 7 13 13 C 1.47025 * 125.65019 * 5.02146 * 12 10 8 14 14 C 1.54319 * 107.27435 * 181.01931 * 13 12 10 15 15 H 1.09001 * 110.71937 * 140.73185 * 14 13 12 16 16 N 1.46498 * 110.72355 * 263.82881 * 14 13 12 17 17 C 1.36939 * 120.00195 * 273.54510 * 16 14 13 18 18 H 1.08003 * 119.99744 * 0.02562 * 17 16 14 19 19 C 1.38804 * 119.99869 * 179.97438 * 17 16 14 20 20 N 1.31623 * 120.00368 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00025 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47153 * 59.99718 * 21 19 17 23 23 H 1.48496 * 109.47326 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46972 * 300.00499 * 21 19 17 25 25 C 1.55157 * 102.94331 * 22.19590 * 14 13 12 26 26 C 1.52999 * 111.00379 * 82.56747 * 25 14 13 27 27 C 1.52998 * 111.00593 * 206.38688 * 25 14 13 28 28 C 1.47426 * 125.65104 * 184.71163 * 12 10 8 29 29 C 1.53155 * 109.23823 * 311.17552 * 8 7 5 30 30 C 1.46479 * 127.77973 * 180.02562 * 4 3 2 31 31 H 1.09002 * 109.47317 * 269.71714 * 1 2 3 32 32 H 1.09002 * 109.47067 * 149.71335 * 1 2 3 33 33 H 1.08997 * 109.47213 * 29.71864 * 1 2 3 34 34 H 1.08000 * 126.65966 * 0.02562 * 3 2 1 35 35 H 1.08997 * 109.72175 * 135.62073 * 7 5 4 36 36 H 1.09001 * 109.71487 * 256.26341 * 7 5 4 37 37 H 1.09003 * 109.88456 * 300.44079 * 13 12 10 38 38 H 1.09009 * 109.88268 * 61.44753 * 13 12 10 39 39 H 0.96997 * 119.99873 * 93.54395 * 16 14 13 40 40 H 0.96997 * 120.00136 * 180.02562 * 20 19 17 41 41 H 1.09000 * 109.47362 * 60.00791 * 26 25 14 42 42 H 1.09008 * 109.47050 * 180.02562 * 26 25 14 43 43 H 1.08996 * 109.47629 * 300.00158 * 26 25 14 44 44 H 1.08992 * 109.47447 * 59.99358 * 27 25 14 45 45 H 1.08995 * 109.46912 * 179.97438 * 27 25 14 46 46 H 1.09002 * 109.46801 * 299.99596 * 27 25 14 47 47 H 1.08998 * 110.37033 * 274.74990 * 28 12 10 48 48 H 1.08996 * 110.36573 * 37.06884 * 28 12 10 49 49 H 1.08999 * 109.46915 * 189.49674 * 29 8 7 50 50 H 1.09008 * 109.46537 * 309.48703 * 29 8 7 51 51 H 1.09001 * 109.58170 * 77.70079 * 30 4 3 52 52 H 1.09002 * 109.69554 * 317.35510 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2989 1.0915 0.0000 4 7 3.5856 0.6415 0.0031 5 6 3.5413 -0.7119 -0.0031 6 7 2.2956 -1.0869 -0.0058 7 6 4.7654 -1.5967 -0.0060 8 6 5.9743 -0.7438 0.3992 9 1 5.9069 -0.4967 1.4586 10 6 7.2433 -1.5151 0.1421 11 8 7.7609 -1.4829 -0.9543 12 7 7.8029 -2.2404 1.1305 13 6 7.2306 -2.4513 2.4682 14 6 8.2289 -3.3200 3.2621 15 1 8.2940 -2.9843 4.2971 16 7 7.8492 -4.7335 3.2005 17 6 6.9557 -5.2425 4.1049 18 1 6.5306 -4.6017 4.8633 19 6 6.5955 -6.5818 4.0462 20 7 7.1132 -7.3626 3.1216 21 14 5.3762 -7.2760 5.2794 22 1 4.0852 -6.5517 5.1604 23 1 5.1617 -8.7195 5.0046 24 1 5.9127 -7.1086 6.6539 25 6 9.5684 -3.0784 2.5174 26 6 10.2322 -1.7830 2.9888 27 6 10.5136 -4.2694 2.6885 28 6 9.0874 -2.9592 1.0473 29 6 5.9827 0.5451 -0.4281 30 6 4.8148 1.4382 0.0048 31 1 -0.3634 -0.0051 1.0277 32 1 -0.3633 -0.8874 -0.5183 33 1 -0.3633 0.8925 -0.5094 34 1 1.9763 2.1222 0.0004 35 1 4.6333 -2.4097 0.7077 36 1 4.9216 -2.0050 -1.0045 37 1 7.0940 -1.4925 2.9684 38 1 6.2729 -2.9654 2.3849 39 1 8.2306 -5.3090 2.5192 40 1 6.8612 -8.2984 3.0804 41 1 10.4335 -1.8462 4.0582 42 1 11.1689 -1.6379 2.4505 43 1 9.5671 -0.9419 2.7934 44 1 10.0452 -5.1662 2.2832 45 1 11.4444 -4.0738 2.1563 46 1 10.7243 -4.4166 3.7478 47 1 8.9414 -3.9479 0.6122 48 1 9.8048 -2.3872 0.4590 49 1 6.9227 1.0733 -0.2682 50 1 5.8795 0.2990 -1.4850 51 1 5.0004 1.8214 1.0082 52 1 4.7140 2.2708 -0.6914 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995962259.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:26 Heat of formation + Delta-G solvation = 12.067542 kcal Electronic energy + Delta-G solvation = -31724.892622 eV Core-core repulsion = 27724.287792 eV Total energy + Delta-G solvation = -4000.604830 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.36513 -41.49291 -39.61553 -37.31562 -35.73233 -34.77659 -34.14413 -32.60352 -32.48756 -30.07856 -29.45467 -28.63384 -27.99979 -27.20923 -25.72901 -24.98393 -23.82692 -22.94340 -21.41518 -20.40714 -20.24765 -19.72098 -19.08872 -18.11810 -17.82154 -17.25869 -16.86313 -16.58604 -16.21141 -15.81895 -15.63350 -15.26426 -15.21375 -15.06312 -14.80128 -14.63880 -14.49483 -14.21022 -13.87998 -13.78390 -13.60962 -13.38572 -13.24414 -13.16590 -13.06500 -12.87335 -12.80344 -12.74960 -12.70901 -12.62212 -12.29235 -12.19895 -12.17041 -12.08268 -11.79579 -11.44858 -11.26865 -11.00961 -10.92791 -10.81615 -10.49997 -9.65325 -9.14533 -9.00160 -7.92200 -5.20019 1.04781 1.44419 1.48750 1.50853 1.55916 1.82996 1.95256 2.06051 2.57252 3.09498 3.36914 3.39299 3.43352 3.48584 3.58570 3.81093 3.88244 3.96983 4.01308 4.04839 4.10215 4.22711 4.31628 4.32329 4.43120 4.46658 4.47963 4.54069 4.61962 4.65151 4.68032 4.77025 4.82019 4.90088 4.90735 4.92272 4.99838 5.01463 5.03624 5.10922 5.11729 5.15602 5.27594 5.34166 5.35590 5.41885 5.54543 5.61303 5.87447 6.21529 6.29185 6.52003 7.04965 7.15530 7.37174 8.11897 8.33812 9.30786 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008898 B = 0.003622 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3146.082683 B = 7727.925789 C =10159.953395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.041 4.041 3 C -0.038 4.038 4 N -0.452 5.452 5 C 0.196 3.804 6 N -0.531 5.531 7 C -0.016 4.016 8 C -0.094 4.094 9 H 0.112 0.888 10 C 0.533 3.467 11 O -0.579 6.579 12 N -0.601 5.601 13 C 0.080 3.920 14 C 0.169 3.831 15 H 0.079 0.921 16 N -0.723 5.723 17 C -0.236 4.236 18 H 0.081 0.919 19 C -0.069 4.069 20 N -0.968 5.968 21 Si 0.963 3.037 22 H -0.283 1.283 23 H -0.302 1.302 24 H -0.275 1.275 25 C -0.075 4.075 26 C -0.122 4.122 27 C -0.121 4.121 28 C 0.120 3.880 29 C -0.110 4.110 30 C 0.105 3.895 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.094 0.906 34 H 0.216 0.784 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.050 0.950 39 H 0.375 0.625 40 H 0.248 0.752 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.060 0.940 44 H 0.035 0.965 45 H 0.071 0.929 46 H 0.057 0.943 47 H 0.040 0.960 48 H 0.081 0.919 49 H 0.113 0.887 50 H 0.070 0.930 51 H 0.112 0.888 52 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.321 24.433 -3.395 24.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.170 4.170 3 C -0.172 4.172 4 N -0.135 5.135 5 C -0.067 4.067 6 N -0.252 5.252 7 C -0.056 4.056 8 C -0.116 4.116 9 H 0.130 0.870 10 C 0.322 3.678 11 O -0.460 6.460 12 N -0.332 5.332 13 C -0.045 4.045 14 C 0.059 3.941 15 H 0.097 0.903 16 N -0.363 5.363 17 C -0.368 4.368 18 H 0.099 0.901 19 C -0.262 4.262 20 N -0.618 5.618 21 Si 0.793 3.207 22 H -0.210 1.210 23 H -0.229 1.229 24 H -0.201 1.201 25 C -0.077 4.077 26 C -0.179 4.179 27 C -0.179 4.179 28 C -0.003 4.003 29 C -0.148 4.148 30 C -0.015 4.015 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.113 0.887 34 H 0.233 0.767 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.109 0.891 38 H 0.068 0.932 39 H 0.208 0.792 40 H 0.057 0.943 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.054 0.946 45 H 0.089 0.911 46 H 0.076 0.924 47 H 0.058 0.942 48 H 0.099 0.901 49 H 0.131 0.869 50 H 0.089 0.911 51 H 0.130 0.870 52 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.339 23.771 -3.858 24.119 hybrid contribution -0.503 -1.013 0.153 1.141 sum -1.842 22.758 -3.705 23.131 Atomic orbital electron populations 1.20051 0.86156 1.03134 1.02547 1.21421 0.97920 0.88428 1.09206 1.22894 0.82068 1.01470 1.10740 1.45593 1.07918 1.06582 1.53389 1.22882 0.94025 0.82862 1.06919 1.69897 1.01097 1.32756 1.21468 1.19860 0.86997 0.95586 1.03110 1.21307 0.90589 0.96028 1.03649 0.86965 1.20367 0.85716 0.78936 0.82736 1.90666 1.65346 1.65961 1.23997 1.48505 1.22191 1.48474 1.14075 1.23100 0.98501 1.00573 0.82344 1.21492 0.91285 0.84044 0.97290 0.90272 1.42606 1.51496 1.05595 1.36603 1.19569 1.16462 0.92973 1.07748 0.90109 1.25423 1.02740 0.97221 1.00804 1.69798 1.48943 1.05537 1.37533 0.85368 0.79361 0.76643 0.79326 1.20960 1.22858 1.20083 1.22000 0.95032 0.97709 0.92915 1.21636 1.00312 0.94086 1.01873 1.21516 0.98217 0.96172 1.01984 1.22296 0.84926 0.95495 0.97586 1.21731 0.99713 0.93352 1.00022 1.22313 0.79628 0.93895 1.05678 0.91134 0.92716 0.88683 0.76740 0.90034 0.90327 0.89107 0.93159 0.79171 0.94288 0.91212 0.91176 0.92097 0.94583 0.91053 0.92410 0.94155 0.90115 0.86878 0.91104 0.87004 0.85624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.15 10.42 71.23 0.74 -0.41 16 2 C -0.04 -1.05 7.10 41.40 0.29 -0.76 16 3 C -0.04 -0.73 11.55 83.22 0.96 0.23 16 4 N -0.45 -9.31 3.13 -513.80 -1.61 -10.92 16 5 C 0.20 5.64 7.65 138.24 1.06 6.70 16 6 N -0.53 -17.70 11.24 -175.70 -1.98 -19.67 16 7 C -0.02 -0.46 5.63 30.09 0.17 -0.29 16 8 C -0.09 -2.18 2.16 -11.35 -0.02 -2.21 16 9 H 0.11 2.25 6.93 -2.39 -0.02 2.24 16 10 C 0.53 16.06 6.83 87.66 0.60 16.66 16 11 O -0.58 -20.91 16.72 -3.04 -0.05 -20.96 16 12 N -0.60 -18.42 3.31 -811.34 -2.69 -21.11 16 13 C 0.08 2.46 5.63 86.73 0.49 2.95 16 14 C 0.17 5.76 2.86 46.18 0.13 5.89 16 15 H 0.08 2.58 8.03 -2.39 -0.02 2.56 16 16 N -0.72 -33.34 4.61 -317.34 -1.46 -34.80 16 17 C -0.24 -12.24 9.98 84.03 0.84 -11.40 16 18 H 0.08 3.96 7.83 -2.91 -0.02 3.93 16 19 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 20 N -0.97 -58.26 13.06 21.65 0.28 -57.98 16 21 Si 0.96 45.52 29.55 68.60 2.03 47.55 16 22 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 23 H -0.30 -14.69 7.11 99.48 0.71 -13.99 16 24 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 25 C -0.08 -2.12 0.83 -50.71 -0.04 -2.16 16 26 C -0.12 -2.50 8.59 71.98 0.62 -1.88 16 27 C -0.12 -3.64 8.22 71.98 0.59 -3.05 16 28 C 0.12 3.75 5.80 86.93 0.50 4.25 16 29 C -0.11 -1.85 4.75 30.74 0.15 -1.71 16 30 C 0.11 1.25 6.98 86.47 0.60 1.86 16 31 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.22 2.03 8.06 -2.91 -0.02 2.01 16 35 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 36 H 0.08 2.47 8.11 -2.39 -0.02 2.45 16 37 H 0.09 2.14 7.63 -2.39 -0.02 2.12 16 38 H 0.05 1.86 8.05 -2.38 -0.02 1.84 16 39 H 0.37 19.15 6.10 -92.71 -0.57 18.59 16 40 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 41 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 43 H 0.06 1.17 7.91 -2.39 -0.02 1.15 16 44 H 0.04 1.33 6.38 -2.39 -0.02 1.31 16 45 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.04 1.50 7.99 -2.39 -0.02 1.48 16 48 H 0.08 2.35 8.00 -2.39 -0.02 2.33 16 49 H 0.11 1.50 8.12 -2.39 -0.02 1.49 16 50 H 0.07 1.46 8.10 -2.38 -0.02 1.44 16 51 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 52 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -74.99 410.39 3.01 -71.98 By element: Atomic # 1 Polarization: 34.30 SS G_CDS: 0.34 Total: 34.64 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: 8.15 Total: 11.28 kcal Atomic # 7 Polarization: -137.04 SS G_CDS: -7.45 Total: -144.49 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.05 Total: -20.96 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -74.99 3.01 -71.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995962259.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.048 kcal (2) G-P(sol) polarization free energy of solvation -74.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds