Wall clock time and date at job start Wed Apr 1 2020 04:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34861 * 125.96019 * 2 1 4 4 N 1.36309 * 106.68730 * 179.97438 * 3 2 1 5 5 C 1.35415 * 107.40026 * 0.05240 * 4 3 2 6 6 N 1.30094 * 108.62951 * 359.93403 * 5 4 3 7 7 C 1.51046 * 123.98104 * 179.88955 * 5 4 3 8 8 C 1.53396 * 108.21480 * 344.06031 * 7 5 4 9 9 H 1.09000 * 109.54513 * 288.86722 * 8 7 5 10 10 C 1.50697 * 109.50960 * 168.74629 * 8 7 5 11 11 O 1.21284 * 119.99904 * 273.21154 * 10 8 7 12 12 N 1.34776 * 120.00071 * 93.21642 * 10 8 7 13 13 C 1.48381 * 127.17247 * 174.83696 * 12 10 8 14 14 C 1.54940 * 103.37479 * 219.24088 * 13 12 10 15 15 H 1.08998 * 110.74520 * 81.06511 * 14 13 12 16 16 N 1.46509 * 110.73809 * 204.38776 * 14 13 12 17 17 C 1.36933 * 119.99980 * 268.41399 * 16 14 13 18 18 H 1.08002 * 119.99923 * 0.02562 * 17 16 14 19 19 C 1.38813 * 120.00235 * 179.97438 * 17 16 14 20 20 N 1.31624 * 119.99521 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00415 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46852 * 90.00135 * 21 19 17 23 23 H 1.48498 * 109.47143 * 210.00155 * 21 19 17 24 24 H 1.48497 * 109.47079 * 330.00414 * 21 19 17 25 25 C 1.54613 * 102.83823 * 322.72460 * 14 13 12 26 26 C 1.53007 * 110.32831 * 262.95831 * 25 14 13 27 27 C 1.52997 * 110.32848 * 140.74533 * 25 14 13 28 28 C 1.47479 * 127.03304 * 355.04862 * 12 10 8 29 29 C 1.53154 * 109.23769 * 48.81603 * 8 7 5 30 30 C 1.46473 * 127.77659 * 180.08646 * 4 3 2 31 31 H 1.09000 * 109.47074 * 90.00087 * 1 2 3 32 32 H 1.09000 * 109.47101 * 210.00085 * 1 2 3 33 33 H 1.08997 * 109.47600 * 329.99656 * 1 2 3 34 34 H 1.08000 * 126.65822 * 359.94335 * 3 2 1 35 35 H 1.09006 * 109.71749 * 224.38082 * 7 5 4 36 36 H 1.09003 * 109.71329 * 103.73927 * 7 5 4 37 37 H 1.08995 * 110.52061 * 100.79817 * 13 12 10 38 38 H 1.09005 * 110.83047 * 337.83032 * 13 12 10 39 39 H 0.97001 * 119.99811 * 88.41425 * 16 14 13 40 40 H 0.96992 * 119.99878 * 180.02562 * 20 19 17 41 41 H 1.08994 * 109.47150 * 177.07403 * 26 25 14 42 42 H 1.08996 * 109.47344 * 297.07616 * 26 25 14 43 43 H 1.09000 * 109.46680 * 57.07474 * 26 25 14 44 44 H 1.09004 * 109.46977 * 302.92480 * 27 25 14 45 45 H 1.08998 * 109.47435 * 62.92150 * 27 25 14 46 46 H 1.09001 * 109.46926 * 182.92401 * 27 25 14 47 47 H 1.09007 * 109.91518 * 35.15014 * 28 12 10 48 48 H 1.09004 * 109.91183 * 274.06793 * 28 12 10 49 49 H 1.09004 * 109.46758 * 50.51953 * 29 8 7 50 50 H 1.08994 * 109.46464 * 170.51240 * 29 8 7 51 51 H 1.09000 * 109.58432 * 43.05335 * 30 4 3 52 52 H 1.09005 * 109.58210 * 282.63950 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2989 1.0916 0.0000 4 7 3.5856 0.6417 0.0006 5 6 3.5413 -0.7117 -0.0003 6 7 2.2956 -1.0868 0.0001 7 6 4.7656 -1.5964 -0.0024 8 6 5.9744 -0.7414 -0.4035 9 1 5.9069 -0.4882 -1.4615 10 6 7.2433 -1.5139 -0.1508 11 8 7.7675 -1.4783 0.9424 12 7 7.7959 -2.2444 -1.1395 13 6 9.0870 -2.9745 -1.1007 14 6 9.6782 -2.7326 -2.5123 15 1 10.1580 -1.7554 -2.5677 16 7 10.6207 -3.7959 -2.8692 17 6 11.9530 -3.6531 -2.5867 18 1 12.3088 -2.7569 -2.1003 19 6 12.8460 -4.6608 -2.9243 20 7 12.4122 -5.7533 -3.5166 21 14 14.6633 -4.4664 -2.5383 22 1 14.9431 -5.0126 -1.1860 23 1 15.4652 -5.2053 -3.5463 24 1 15.0260 -3.0269 -2.5755 25 6 8.4283 -2.7811 -3.4211 26 6 8.2756 -4.1715 -4.0412 27 6 8.5259 -1.7173 -4.5164 28 6 7.2423 -2.4791 -2.4862 29 6 5.9828 0.5432 0.4304 30 6 4.8147 1.4384 0.0026 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5139 34 1 1.9763 2.1223 -0.0009 35 1 4.6332 -2.4058 -0.7205 36 1 4.9221 -2.0100 0.9939 37 1 8.9196 -4.0381 -0.9309 38 1 9.7425 -2.5624 -0.3334 39 1 10.3010 -4.6010 -3.3057 40 1 13.0361 -6.4575 -3.7523 41 1 7.3634 -4.2055 -4.6367 42 1 9.1341 -4.3811 -4.6793 43 1 8.2206 -4.9184 -3.2492 44 1 8.6473 -0.7352 -4.0593 45 1 9.3841 -1.9298 -5.1539 46 1 7.6159 -1.7290 -5.1163 47 1 6.7149 -1.5897 -2.8310 48 1 6.5608 -3.3295 -2.4644 49 1 5.8800 0.2917 1.4860 50 1 6.9226 1.0722 0.2729 51 1 4.7125 2.2660 0.7045 52 1 4.9999 1.8268 -0.9989 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995962260.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:30 Heat of formation + Delta-G solvation = 34.905253 kcal Electronic energy + Delta-G solvation = -31272.214379 eV Core-core repulsion = 27272.599866 eV Total energy + Delta-G solvation = -3999.614513 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.59331 -40.23957 -38.43333 -36.44667 -34.29657 -33.54710 -33.04793 -31.80000 -30.89721 -29.33799 -28.12262 -27.16577 -27.01635 -26.10086 -24.46065 -23.97871 -22.90196 -21.53473 -20.59842 -19.48469 -19.04221 -18.48882 -17.47404 -17.16228 -16.96168 -16.15374 -15.74587 -15.28292 -14.84868 -14.49331 -14.39833 -14.33103 -14.05719 -13.92633 -13.87692 -13.62618 -13.36380 -13.21603 -12.99974 -12.81604 -12.59857 -12.54112 -12.17935 -11.98789 -11.96129 -11.79100 -11.67489 -11.43279 -11.38726 -11.25366 -11.02917 -10.94721 -10.70404 -10.51988 -10.21314 -10.12304 -9.95816 -9.72992 -9.72415 -9.64985 -9.05240 -8.46693 -8.39779 -7.07826 -5.86541 -3.16335 1.80330 2.49852 2.60758 2.87712 3.00484 3.39399 3.45361 3.46058 3.96393 4.12709 4.21832 4.25830 4.51991 4.65247 4.69800 4.75756 4.77510 4.83352 4.95127 5.01462 5.07226 5.12400 5.15464 5.35467 5.39868 5.43756 5.49163 5.52111 5.57237 5.59389 5.66600 5.70065 5.73439 5.78996 5.81775 5.89922 6.00142 6.10054 6.12536 6.20573 6.24738 6.27654 6.36893 6.54495 6.56612 6.58187 6.72061 6.89293 6.93375 7.63621 7.72486 7.92565 8.22415 8.32201 9.44214 9.97760 10.32834 11.35585 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022154 B = 0.002302 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.550307 B =12159.506654 C =12659.925863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.005 4.005 3 C -0.056 4.056 4 N -0.455 5.455 5 C 0.217 3.783 6 N -0.485 5.485 7 C -0.020 4.020 8 C -0.108 4.108 9 H 0.097 0.903 10 C 0.536 3.464 11 O -0.542 6.542 12 N -0.613 5.613 13 C 0.081 3.919 14 C 0.179 3.821 15 H 0.065 0.935 16 N -0.712 5.712 17 C -0.247 4.247 18 H 0.071 0.929 19 C -0.009 4.009 20 N -0.930 5.930 21 Si 0.908 3.092 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 C -0.088 4.088 26 C -0.136 4.136 27 C -0.131 4.131 28 C 0.109 3.891 29 C -0.117 4.117 30 C 0.105 3.895 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.173 0.827 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.391 0.609 40 H 0.257 0.743 41 H 0.048 0.952 42 H 0.076 0.924 43 H 0.058 0.942 44 H 0.050 0.950 45 H 0.065 0.935 46 H 0.049 0.951 47 H 0.068 0.932 48 H 0.068 0.932 49 H 0.088 0.912 50 H 0.096 0.904 51 H 0.094 0.906 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.572 14.899 2.438 25.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.135 4.135 3 C -0.189 4.189 4 N -0.138 5.138 5 C -0.045 4.045 6 N -0.204 5.204 7 C -0.059 4.059 8 C -0.130 4.130 9 H 0.115 0.885 10 C 0.323 3.677 11 O -0.420 6.420 12 N -0.346 5.346 13 C -0.044 4.044 14 C 0.066 3.934 15 H 0.083 0.917 16 N -0.354 5.354 17 C -0.378 4.378 18 H 0.089 0.911 19 C -0.205 4.205 20 N -0.578 5.578 21 Si 0.739 3.261 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.090 4.090 26 C -0.194 4.194 27 C -0.189 4.189 28 C -0.015 4.015 29 C -0.155 4.155 30 C -0.017 4.017 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.190 0.810 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.229 0.771 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.094 0.906 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.084 0.916 46 H 0.069 0.931 47 H 0.087 0.913 48 H 0.086 0.914 49 H 0.106 0.894 50 H 0.114 0.886 51 H 0.113 0.887 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -20.269 14.294 3.111 24.997 hybrid contribution 1.179 0.692 0.032 1.367 sum -19.090 14.986 3.143 24.472 Atomic orbital electron populations 1.19993 0.87711 1.02489 1.02057 1.20804 0.96467 0.88310 1.07879 1.22284 0.82834 1.00347 1.13426 1.45367 1.06571 1.07432 1.54474 1.23063 0.94605 0.81524 1.05350 1.69953 0.99612 1.30410 1.20450 1.20040 0.85774 0.95435 1.04672 1.21384 0.93517 0.95879 1.02249 0.88484 1.19766 0.85203 0.79180 0.83504 1.90717 1.63849 1.64290 1.23101 1.48903 1.23371 1.49117 1.13177 1.23721 0.82529 0.96045 1.02064 1.21271 0.88674 0.93873 0.89537 0.91736 1.42576 1.03501 1.18669 1.70649 1.19261 0.83650 1.02007 1.32861 0.91101 1.24747 0.98204 0.96531 1.01040 1.69648 1.34031 1.07856 1.46256 0.86185 0.85076 0.77321 0.77560 1.21608 1.21743 1.20715 1.21716 0.95212 0.96731 0.95294 1.21759 1.01745 0.94891 1.00983 1.21799 1.01807 0.97348 0.97897 1.22332 0.96454 1.00667 0.82015 1.21751 0.97919 0.94333 1.01513 1.22039 0.81937 0.94324 1.03424 0.91556 0.91260 0.91527 0.80972 0.88157 0.88450 0.91069 0.90522 0.77149 0.93356 0.93319 0.90555 0.92291 0.93086 0.91587 0.93148 0.91332 0.91366 0.89376 0.88578 0.88723 0.89459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.51 10.42 36.00 0.38 -0.14 16 2 C -0.01 -0.06 7.10 -82.72 -0.59 -0.65 16 3 C -0.06 -0.52 11.55 -16.76 -0.19 -0.71 16 4 N -0.46 -4.42 3.13 -113.75 -0.36 -4.77 16 5 C 0.22 2.57 7.65 -155.24 -1.19 1.38 16 6 N -0.48 -6.55 11.24 -6.88 -0.08 -6.63 16 7 C -0.02 -0.21 5.63 -27.51 -0.15 -0.37 16 8 C -0.11 -1.11 2.19 -91.49 -0.20 -1.31 16 9 H 0.10 0.86 6.52 -51.93 -0.34 0.53 16 10 C 0.54 7.63 6.88 -10.99 -0.08 7.55 16 11 O -0.54 -9.73 16.68 5.55 0.09 -9.64 16 12 N -0.61 -8.92 3.30 -169.55 -0.56 -9.48 16 13 C 0.08 1.45 6.75 -1.98 -0.01 1.44 16 14 C 0.18 3.29 3.15 -66.05 -0.21 3.08 16 15 H 0.06 1.24 7.81 -51.93 -0.41 0.83 16 16 N -0.71 -16.41 4.97 -51.61 -0.26 -16.67 16 17 C -0.25 -6.50 9.96 -15.06 -0.15 -6.65 16 18 H 0.07 1.84 7.83 -52.49 -0.41 1.42 16 19 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 20 N -0.93 -26.83 13.06 55.49 0.72 -26.11 16 21 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 C -0.09 -1.26 0.95 -153.14 -0.15 -1.40 16 26 C -0.14 -2.02 7.02 37.16 0.26 -1.76 16 27 C -0.13 -1.67 8.23 37.16 0.31 -1.36 16 28 C 0.11 1.33 6.11 -2.98 -0.02 1.31 16 29 C -0.12 -1.02 4.74 -26.52 -0.13 -1.14 16 30 C 0.10 0.71 6.98 -3.92 -0.03 0.68 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.10 1.12 8.11 -51.93 -0.42 0.70 16 37 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.08 1.51 7.92 -51.93 -0.41 1.10 16 39 H 0.39 9.40 5.13 -40.82 -0.21 9.19 16 40 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 1.33 7.00 -51.93 -0.36 0.96 16 43 H 0.06 0.93 7.95 -51.93 -0.41 0.51 16 44 H 0.05 0.61 8.13 -51.93 -0.42 0.19 16 45 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.07 0.68 6.23 -51.93 -0.32 0.36 16 48 H 0.07 0.78 7.68 -51.93 -0.40 0.38 16 49 H 0.09 0.88 8.10 -51.93 -0.42 0.46 16 50 H 0.10 0.79 8.11 -51.93 -0.42 0.36 16 51 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 52 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 408.38 15.07 6.15 6.15 Total: -1.00 -32.80 408.38 -10.29 -43.09 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -8.75 Total: 7.64 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -2.24 Total: -0.38 kcal Atomic # 7 Polarization: -63.13 SS G_CDS: -0.53 Total: -63.66 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.09 Total: -9.64 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.80 -10.29 -43.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995962260.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.996 kcal (2) G-P(sol) polarization free energy of solvation -32.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds