Wall clock time and date at job start Wed Apr 1 2020 04:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34861 * 125.96019 * 2 1 4 4 N 1.36309 * 106.68730 * 179.97438 * 3 2 1 5 5 C 1.35415 * 107.40026 * 0.05240 * 4 3 2 6 6 N 1.30094 * 108.62951 * 359.93403 * 5 4 3 7 7 C 1.51046 * 123.98104 * 179.88955 * 5 4 3 8 8 C 1.53396 * 108.21480 * 344.06031 * 7 5 4 9 9 H 1.09000 * 109.54513 * 288.86722 * 8 7 5 10 10 C 1.50697 * 109.50960 * 168.74629 * 8 7 5 11 11 O 1.21284 * 119.99904 * 273.21154 * 10 8 7 12 12 N 1.34776 * 120.00071 * 93.21642 * 10 8 7 13 13 C 1.48381 * 127.17247 * 174.83696 * 12 10 8 14 14 C 1.54940 * 103.37479 * 219.24088 * 13 12 10 15 15 H 1.08998 * 110.74520 * 81.06511 * 14 13 12 16 16 N 1.46509 * 110.73809 * 204.38776 * 14 13 12 17 17 C 1.36933 * 119.99980 * 268.41399 * 16 14 13 18 18 H 1.08002 * 119.99923 * 0.02562 * 17 16 14 19 19 C 1.38813 * 120.00235 * 179.97438 * 17 16 14 20 20 N 1.31624 * 119.99521 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00415 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46852 * 90.00135 * 21 19 17 23 23 H 1.48498 * 109.47143 * 210.00155 * 21 19 17 24 24 H 1.48497 * 109.47079 * 330.00414 * 21 19 17 25 25 C 1.54613 * 102.83823 * 322.72460 * 14 13 12 26 26 C 1.53007 * 110.32831 * 262.95831 * 25 14 13 27 27 C 1.52997 * 110.32848 * 140.74533 * 25 14 13 28 28 C 1.47479 * 127.03304 * 355.04862 * 12 10 8 29 29 C 1.53154 * 109.23769 * 48.81603 * 8 7 5 30 30 C 1.46473 * 127.77659 * 180.08646 * 4 3 2 31 31 H 1.09000 * 109.47074 * 90.00087 * 1 2 3 32 32 H 1.09000 * 109.47101 * 210.00085 * 1 2 3 33 33 H 1.08997 * 109.47600 * 329.99656 * 1 2 3 34 34 H 1.08000 * 126.65822 * 359.94335 * 3 2 1 35 35 H 1.09006 * 109.71749 * 224.38082 * 7 5 4 36 36 H 1.09003 * 109.71329 * 103.73927 * 7 5 4 37 37 H 1.08995 * 110.52061 * 100.79817 * 13 12 10 38 38 H 1.09005 * 110.83047 * 337.83032 * 13 12 10 39 39 H 0.97001 * 119.99811 * 88.41425 * 16 14 13 40 40 H 0.96992 * 119.99878 * 180.02562 * 20 19 17 41 41 H 1.08994 * 109.47150 * 177.07403 * 26 25 14 42 42 H 1.08996 * 109.47344 * 297.07616 * 26 25 14 43 43 H 1.09000 * 109.46680 * 57.07474 * 26 25 14 44 44 H 1.09004 * 109.46977 * 302.92480 * 27 25 14 45 45 H 1.08998 * 109.47435 * 62.92150 * 27 25 14 46 46 H 1.09001 * 109.46926 * 182.92401 * 27 25 14 47 47 H 1.09007 * 109.91518 * 35.15014 * 28 12 10 48 48 H 1.09004 * 109.91183 * 274.06793 * 28 12 10 49 49 H 1.09004 * 109.46758 * 50.51953 * 29 8 7 50 50 H 1.08994 * 109.46464 * 170.51240 * 29 8 7 51 51 H 1.09000 * 109.58432 * 43.05335 * 30 4 3 52 52 H 1.09005 * 109.58210 * 282.63950 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2989 1.0916 0.0000 4 7 3.5856 0.6417 0.0006 5 6 3.5413 -0.7117 -0.0003 6 7 2.2956 -1.0868 0.0001 7 6 4.7656 -1.5964 -0.0024 8 6 5.9744 -0.7414 -0.4035 9 1 5.9069 -0.4882 -1.4615 10 6 7.2433 -1.5139 -0.1508 11 8 7.7675 -1.4783 0.9424 12 7 7.7959 -2.2444 -1.1395 13 6 9.0870 -2.9745 -1.1007 14 6 9.6782 -2.7326 -2.5123 15 1 10.1580 -1.7554 -2.5677 16 7 10.6207 -3.7959 -2.8692 17 6 11.9530 -3.6531 -2.5867 18 1 12.3088 -2.7569 -2.1003 19 6 12.8460 -4.6608 -2.9243 20 7 12.4122 -5.7533 -3.5166 21 14 14.6633 -4.4664 -2.5383 22 1 14.9431 -5.0126 -1.1860 23 1 15.4652 -5.2053 -3.5463 24 1 15.0260 -3.0269 -2.5755 25 6 8.4283 -2.7811 -3.4211 26 6 8.2756 -4.1715 -4.0412 27 6 8.5259 -1.7173 -4.5164 28 6 7.2423 -2.4791 -2.4862 29 6 5.9828 0.5432 0.4304 30 6 4.8147 1.4384 0.0026 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5139 34 1 1.9763 2.1223 -0.0009 35 1 4.6332 -2.4058 -0.7205 36 1 4.9221 -2.0100 0.9939 37 1 8.9196 -4.0381 -0.9309 38 1 9.7425 -2.5624 -0.3334 39 1 10.3010 -4.6010 -3.3057 40 1 13.0361 -6.4575 -3.7523 41 1 7.3634 -4.2055 -4.6367 42 1 9.1341 -4.3811 -4.6793 43 1 8.2206 -4.9184 -3.2492 44 1 8.6473 -0.7352 -4.0593 45 1 9.3841 -1.9298 -5.1539 46 1 7.6159 -1.7290 -5.1163 47 1 6.7149 -1.5897 -2.8310 48 1 6.5608 -3.3295 -2.4644 49 1 5.8800 0.2917 1.4860 50 1 6.9226 1.0722 0.2729 51 1 4.7125 2.2660 0.7045 52 1 4.9999 1.8268 -0.9989 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995962260.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:29 Heat of formation + Delta-G solvation = 15.453464 kcal Electronic energy + Delta-G solvation = -31273.057872 eV Core-core repulsion = 27272.599866 eV Total energy + Delta-G solvation = -4000.458005 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.33094 -41.43909 -39.65626 -37.30504 -35.97019 -34.58281 -34.23701 -32.70976 -32.45028 -30.20793 -29.38035 -28.26534 -28.04202 -27.17894 -25.91888 -24.98041 -23.97287 -22.83764 -21.38035 -20.36417 -20.12856 -19.80373 -19.18827 -18.21090 -17.79540 -17.13029 -16.92426 -16.37131 -16.33237 -15.79727 -15.60473 -15.15742 -15.11897 -15.02819 -14.93427 -14.63953 -14.48093 -14.38609 -14.13019 -13.84861 -13.53079 -13.33843 -13.26336 -13.14098 -12.98599 -12.89450 -12.79887 -12.68412 -12.62180 -12.54159 -12.24058 -12.17419 -12.08073 -12.05503 -11.90759 -11.51296 -11.33070 -10.97052 -10.93035 -10.83213 -10.46039 -9.77381 -9.11303 -9.00863 -7.96582 -5.24659 1.08859 1.45854 1.47313 1.48087 1.55425 1.81990 1.88576 2.09229 2.55025 3.10409 3.35102 3.41549 3.45470 3.52824 3.55775 3.77579 3.89112 3.98729 4.04793 4.08897 4.17560 4.24288 4.34427 4.35413 4.41063 4.45921 4.49456 4.51034 4.59127 4.61638 4.72579 4.80131 4.83205 4.85836 4.91049 4.93953 4.96330 5.04708 5.05341 5.10135 5.12199 5.19068 5.21490 5.35166 5.39542 5.46878 5.50519 5.57883 5.90426 6.24042 6.26191 6.55817 7.05289 7.17223 7.34058 8.07670 8.32359 9.26147 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022154 B = 0.002302 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.550307 B =12159.506654 C =12659.925863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.039 4.039 3 C -0.042 4.042 4 N -0.454 5.454 5 C 0.197 3.803 6 N -0.525 5.525 7 C -0.014 4.014 8 C -0.092 4.092 9 H 0.123 0.877 10 C 0.535 3.465 11 O -0.585 6.585 12 N -0.611 5.611 13 C 0.090 3.910 14 C 0.173 3.827 15 H 0.057 0.943 16 N -0.722 5.722 17 C -0.243 4.243 18 H 0.071 0.929 19 C -0.069 4.069 20 N -0.964 5.964 21 Si 0.967 3.033 22 H -0.292 1.292 23 H -0.294 1.294 24 H -0.271 1.271 25 C -0.080 4.080 26 C -0.131 4.131 27 C -0.126 4.126 28 C 0.112 3.888 29 C -0.116 4.116 30 C 0.108 3.892 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.210 0.790 35 H 0.103 0.897 36 H 0.079 0.921 37 H 0.054 0.946 38 H 0.050 0.950 39 H 0.384 0.616 40 H 0.251 0.749 41 H 0.083 0.917 42 H 0.045 0.955 43 H 0.042 0.958 44 H 0.062 0.938 45 H 0.042 0.958 46 H 0.082 0.918 47 H 0.107 0.893 48 H 0.082 0.918 49 H 0.068 0.932 50 H 0.104 0.896 51 H 0.119 0.881 52 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.701 18.100 1.568 29.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.167 4.167 3 C -0.176 4.176 4 N -0.136 5.136 5 C -0.066 4.066 6 N -0.245 5.245 7 C -0.054 4.054 8 C -0.114 4.114 9 H 0.141 0.859 10 C 0.325 3.675 11 O -0.465 6.465 12 N -0.343 5.343 13 C -0.036 4.036 14 C 0.062 3.938 15 H 0.075 0.925 16 N -0.364 5.364 17 C -0.375 4.375 18 H 0.089 0.911 19 C -0.262 4.262 20 N -0.614 5.614 21 Si 0.797 3.203 22 H -0.219 1.219 23 H -0.221 1.221 24 H -0.196 1.196 25 C -0.082 4.082 26 C -0.188 4.188 27 C -0.184 4.184 28 C -0.010 4.010 29 C -0.154 4.154 30 C -0.013 4.013 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.108 0.892 34 H 0.226 0.774 35 H 0.122 0.878 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.221 0.779 40 H 0.060 0.940 41 H 0.102 0.898 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.081 0.919 45 H 0.061 0.939 46 H 0.101 0.899 47 H 0.125 0.875 48 H 0.101 0.899 49 H 0.087 0.913 50 H 0.122 0.878 51 H 0.137 0.863 52 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -22.429 17.547 2.239 28.565 hybrid contribution 1.773 -0.261 0.374 1.831 sum -20.655 17.286 2.613 27.061 Atomic orbital electron populations 1.20043 0.86201 1.03041 1.02623 1.21377 0.97832 0.88460 1.09057 1.22851 0.82215 1.01471 1.11040 1.45568 1.07660 1.06906 1.53484 1.23014 0.94245 0.82649 1.06645 1.69884 1.00795 1.32304 1.21541 1.19931 0.85962 0.95648 1.03836 1.21332 0.90391 0.95647 1.04017 0.85942 1.20534 0.85961 0.78516 0.82522 1.90700 1.65316 1.65569 1.24903 1.48912 1.22121 1.48752 1.14520 1.23254 0.84205 0.95316 1.00819 1.21418 0.89671 0.91914 0.90775 0.92533 1.42694 1.03299 1.19658 1.70744 1.19582 0.85262 1.01506 1.31145 0.91109 1.25463 1.01931 0.96689 1.02101 1.69785 1.34860 1.08599 1.48152 0.85239 0.80757 0.77567 0.76787 1.21903 1.22092 1.19561 1.21659 0.93653 0.97274 0.95568 1.21693 1.02047 0.94749 1.00358 1.21772 1.02469 0.96950 0.97184 1.22477 0.95550 1.03116 0.79885 1.21737 0.99463 0.93981 1.00179 1.22249 0.79690 0.93777 1.05596 0.90937 0.92492 0.89195 0.77372 0.87825 0.90236 0.92799 0.93142 0.77925 0.93968 0.89812 0.93614 0.93930 0.91932 0.93916 0.89873 0.87487 0.89934 0.91276 0.87803 0.86263 0.86864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.86 10.42 71.23 0.74 -0.12 16 2 C -0.04 -0.79 7.10 41.41 0.29 -0.49 16 3 C -0.04 -0.64 11.55 83.22 0.96 0.32 16 4 N -0.45 -7.31 3.13 -513.81 -1.61 -8.92 16 5 C 0.20 4.33 7.65 138.24 1.06 5.38 16 6 N -0.52 -13.67 11.24 -175.69 -1.98 -15.64 16 7 C -0.01 -0.29 5.63 30.09 0.17 -0.12 16 8 C -0.09 -1.66 2.19 -11.36 -0.02 -1.69 16 9 H 0.12 1.61 6.52 -2.39 -0.02 1.60 16 10 C 0.54 14.74 6.88 87.66 0.60 15.34 16 11 O -0.58 -21.30 16.68 -3.04 -0.05 -21.35 16 12 N -0.61 -17.16 3.30 -808.72 -2.67 -19.83 16 13 C 0.09 3.31 6.75 86.68 0.59 3.90 16 14 C 0.17 6.42 3.15 46.20 0.15 6.56 16 15 H 0.06 2.18 7.81 -2.39 -0.02 2.16 16 16 N -0.72 -34.37 4.97 -317.20 -1.58 -35.94 16 17 C -0.24 -13.12 9.96 84.03 0.84 -12.28 16 18 H 0.07 3.74 7.83 -2.91 -0.02 3.71 16 19 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 20 N -0.96 -57.33 13.06 21.65 0.28 -57.04 16 21 Si 0.97 45.76 29.55 68.60 2.03 47.78 16 22 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 23 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 24 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 25 C -0.08 -2.16 0.95 -51.29 -0.05 -2.21 16 26 C -0.13 -3.78 7.02 71.98 0.51 -3.27 16 27 C -0.13 -2.85 8.23 71.98 0.59 -2.26 16 28 C 0.11 2.40 6.11 86.53 0.53 2.93 16 29 C -0.12 -1.71 4.74 30.73 0.15 -1.57 16 30 C 0.11 1.00 6.98 86.47 0.60 1.61 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.21 1.41 8.06 -2.91 -0.02 1.39 16 35 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 36 H 0.08 1.87 8.11 -2.39 -0.02 1.85 16 37 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.05 2.09 7.92 -2.38 -0.02 2.07 16 39 H 0.38 19.24 5.13 -92.71 -0.48 18.77 16 40 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 41 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.04 1.61 7.00 -2.39 -0.02 1.59 16 43 H 0.04 1.35 7.95 -2.39 -0.02 1.33 16 44 H 0.06 1.28 8.13 -2.38 -0.02 1.26 16 45 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.11 1.56 6.23 -2.38 -0.01 1.54 16 48 H 0.08 1.62 7.68 -2.38 -0.02 1.60 16 49 H 0.07 1.31 8.10 -2.38 -0.02 1.29 16 50 H 0.10 1.41 8.11 -2.39 -0.02 1.39 16 51 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 52 H 0.11 0.57 8.14 -2.38 -0.02 0.55 16 Total: -1.00 -75.74 408.38 3.02 -72.71 By element: Atomic # 1 Polarization: 29.18 SS G_CDS: 0.43 Total: 29.61 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: 8.16 Total: 8.63 kcal Atomic # 7 Polarization: -129.83 SS G_CDS: -7.55 Total: -137.38 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.05 Total: -21.35 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Total: -75.74 3.02 -72.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995962260.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.164 kcal (2) G-P(sol) polarization free energy of solvation -75.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds