Wall clock time and date at job start Wed Apr 1 2020 04:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 110.88482 * 2 1 4 4 C 1.55132 * 111.19106 * 236.07132 * 2 1 3 5 5 N 1.47426 * 104.72162 * 279.19017 * 4 2 1 6 6 C 1.34776 * 125.64811 * 155.81398 * 5 4 2 7 7 O 1.21680 * 119.99991 * 4.43683 * 6 5 4 8 8 C 1.46763 * 120.00137 * 184.42966 * 6 5 4 9 9 C 1.36696 * 126.87949 * 354.24313 * 8 6 5 10 10 N 1.33303 * 107.79187 * 179.77261 * 9 8 6 11 11 C 1.30957 * 109.75542 * 359.76362 * 10 9 8 12 12 N 1.34541 * 108.95074 * 0.64263 * 11 10 9 13 13 C 1.46477 * 126.52559 * 178.91592 * 12 11 10 14 14 C 1.53038 * 109.57059 * 28.18912 * 13 12 11 15 15 C 1.52825 * 109.60335 * 270.59837 * 14 13 12 16 16 C 1.52584 * 110.29864 * 61.25189 * 15 14 13 17 17 C 1.50944 * 125.85711 * 181.06963 * 11 10 9 18 18 C 1.47019 * 108.70174 * 335.55612 * 5 4 2 19 19 C 1.54324 * 107.27317 * 1.28671 * 18 5 4 20 20 H 1.09006 * 110.71478 * 263.82826 * 19 18 5 21 21 N 1.46497 * 110.71929 * 140.55784 * 19 18 5 22 22 C 1.36939 * 120.00029 * 86.45546 * 21 19 18 23 23 H 1.08005 * 119.99937 * 359.97438 * 22 21 19 24 24 C 1.38807 * 120.00246 * 179.97438 * 22 21 19 25 25 N 1.31619 * 119.99975 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00275 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47154 * 90.00153 * 26 24 22 28 28 H 1.48506 * 109.47274 * 210.00164 * 26 24 22 29 29 H 1.48503 * 109.47089 * 330.00270 * 26 24 22 30 30 H 1.08999 * 109.47081 * 296.11398 * 1 2 3 31 31 H 1.09001 * 109.47157 * 56.11827 * 1 2 3 32 32 H 1.08997 * 109.47637 * 176.11811 * 1 2 3 33 33 H 1.08996 * 109.46597 * 183.88029 * 3 2 1 34 34 H 1.08995 * 109.46967 * 303.88396 * 3 2 1 35 35 H 1.09003 * 109.46713 * 63.88373 * 3 2 1 36 36 H 1.08994 * 110.49751 * 160.34912 * 4 2 1 37 37 H 1.08997 * 110.34310 * 37.95504 * 4 2 1 38 38 H 1.07998 * 126.09991 * 359.77790 * 9 8 6 39 39 H 1.08998 * 109.45468 * 148.22013 * 13 12 11 40 40 H 1.08996 * 109.45606 * 268.18173 * 13 12 11 41 41 H 1.09004 * 109.45226 * 30.64050 * 14 13 12 42 42 H 1.09006 * 109.44795 * 150.58573 * 14 13 12 43 43 H 1.09002 * 109.33170 * 181.50495 * 15 14 13 44 44 H 1.08993 * 109.33591 * 300.99161 * 15 14 13 45 45 H 1.09001 * 109.45589 * 153.43766 * 16 15 14 46 46 H 1.09001 * 109.45079 * 273.37734 * 16 15 14 47 47 H 1.09002 * 109.49999 * 106.59233 * 17 11 10 48 48 H 1.09002 * 109.53554 * 346.49592 * 17 11 10 49 49 H 1.08999 * 109.88489 * 120.70243 * 18 5 4 50 50 H 1.09004 * 109.88229 * 241.86749 * 18 5 4 51 51 H 0.97000 * 120.00008 * 266.45169 * 21 19 18 52 52 H 0.97002 * 120.00372 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0754 1.4295 0.0000 4 6 2.0908 -0.8073 -1.2001 5 7 2.0139 -2.2161 -0.7726 6 6 1.9470 -3.2834 -1.5930 7 8 2.0282 -3.1310 -2.7975 8 6 1.7763 -4.6294 -1.0335 9 6 1.7792 -4.9745 0.2891 10 7 1.5885 -6.2916 0.3669 11 6 1.4610 -6.7922 -0.8365 12 7 1.5813 -5.8002 -1.7374 13 6 1.5240 -5.9345 -3.1949 14 6 0.6516 -7.1362 -3.5650 15 6 1.5168 -8.3936 -3.6416 16 6 2.1591 -8.6775 -2.2869 17 6 1.2092 -8.2430 -1.1685 18 6 2.0285 -2.2644 0.6967 19 6 2.0861 -0.8075 1.2024 20 1 3.1133 -0.5156 1.4211 21 7 1.2343 -0.6342 2.3816 22 6 1.7296 -0.9030 3.6296 23 1 2.7482 -1.2433 3.7446 24 6 0.9227 -0.7383 4.7470 25 7 -0.3184 -0.3231 4.6070 26 14 1.5982 -1.1057 6.4494 27 1 2.2081 0.1241 7.0160 28 1 0.4947 -1.5628 7.3318 29 1 2.6289 -2.1705 6.3537 30 1 -0.3633 0.4523 0.9228 31 1 -0.3633 0.5729 -0.8532 32 1 -0.3634 -1.0252 -0.0696 33 1 3.1629 1.4033 -0.0695 34 1 1.6697 1.9732 -0.8531 35 1 1.7823 1.9302 0.9228 36 1 3.1252 -0.5271 -1.3987 37 1 1.4764 -0.6456 -2.0858 38 1 1.9120 -4.3004 1.1224 39 1 1.0969 -5.0292 -3.6263 40 1 2.5306 -6.0829 -3.5857 41 1 -0.1198 -7.2720 -2.8069 42 1 0.1822 -6.9595 -4.5328 43 1 0.8962 -9.2415 -3.9315 44 1 2.2977 -8.2494 -4.3881 45 1 2.3611 -9.7449 -2.1975 46 1 3.0940 -8.1232 -2.2052 47 1 0.1777 -8.3671 -1.4982 48 1 1.3846 -8.8551 -0.2838 49 1 1.1218 -2.7475 1.0608 50 1 2.9063 -2.8113 1.0409 51 1 0.3194 -0.3289 2.2784 52 1 -0.8825 -0.2084 5.3878 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995973241.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:35 Heat of formation + Delta-G solvation = 42.527815 kcal Electronic energy + Delta-G solvation = -31982.153563 eV Core-core repulsion = 27982.869590 eV Total energy + Delta-G solvation = -3999.283973 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.44108 -39.90825 -37.84519 -37.51648 -34.25546 -33.74199 -33.26879 -31.08592 -30.81399 -29.72469 -27.67564 -27.06778 -26.95156 -25.52800 -24.57684 -24.07486 -22.65797 -21.09646 -20.35462 -20.11155 -19.25295 -18.66316 -17.25180 -16.87229 -16.49319 -16.12422 -15.78304 -15.48935 -15.06761 -14.98000 -14.59800 -14.17174 -14.07766 -13.83094 -13.72893 -13.42615 -13.11653 -13.04093 -12.96604 -12.62716 -12.49617 -12.23613 -12.10080 -12.03323 -11.98782 -11.55049 -11.32647 -11.17311 -11.14462 -11.03815 -10.93014 -10.88474 -10.58357 -10.47204 -10.24266 -10.21644 -9.89419 -9.70533 -9.65302 -9.60023 -8.98680 -8.49413 -8.27623 -7.08658 -5.84532 -3.15095 1.40721 2.43391 2.89032 3.31765 3.41580 3.47684 3.48582 3.49099 4.12272 4.24771 4.32494 4.43065 4.52667 4.60595 4.76511 4.90920 4.94020 4.98683 5.03859 5.14294 5.17439 5.25956 5.29424 5.40237 5.46527 5.49470 5.55291 5.58793 5.65228 5.67334 5.70478 5.75962 5.78193 5.80655 5.91155 5.93532 6.01387 6.10345 6.16416 6.20829 6.31241 6.35375 6.39356 6.55034 6.61747 6.67219 6.72961 6.87453 7.09344 7.64451 7.70172 7.99782 8.28510 8.33817 9.46060 9.99211 10.34155 11.37430 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012140 B = 0.003241 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.914950 B = 8636.396116 C =10416.328259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.086 4.086 3 C -0.129 4.129 4 C 0.123 3.877 5 N -0.596 5.596 6 C 0.607 3.393 7 O -0.564 6.564 8 C -0.086 4.086 9 C 0.036 3.964 10 N -0.493 5.493 11 C 0.226 3.774 12 N -0.420 5.420 13 C 0.103 3.897 14 C -0.142 4.142 15 C -0.124 4.124 16 C -0.124 4.124 17 C -0.037 4.037 18 C 0.063 3.937 19 C 0.181 3.819 20 H 0.068 0.932 21 N -0.710 5.710 22 C -0.249 4.249 23 H 0.073 0.927 24 C -0.006 4.006 25 N -0.929 5.929 26 Si 0.907 3.093 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.280 1.280 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.195 0.805 39 H 0.105 0.895 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.078 0.922 46 H 0.065 0.935 47 H 0.090 0.910 48 H 0.099 0.901 49 H 0.082 0.918 50 H 0.065 0.935 51 H 0.390 0.610 52 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.191 -11.391 -17.456 21.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.087 4.087 3 C -0.187 4.187 4 C 0.001 3.999 5 N -0.328 5.328 6 C 0.396 3.604 7 O -0.445 6.445 8 C -0.202 4.202 9 C -0.118 4.118 10 N -0.211 5.211 11 C -0.036 4.036 12 N -0.101 5.101 13 C -0.019 4.019 14 C -0.180 4.180 15 C -0.161 4.161 16 C -0.162 4.162 17 C -0.076 4.076 18 C -0.063 4.063 19 C 0.068 3.932 20 H 0.085 0.915 21 N -0.352 5.352 22 C -0.380 4.380 23 H 0.090 0.910 24 C -0.203 4.203 25 N -0.576 5.576 26 Si 0.737 3.263 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.206 1.206 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.211 0.789 39 H 0.124 0.876 40 H 0.102 0.898 41 H 0.099 0.901 42 H 0.104 0.896 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.097 0.903 46 H 0.084 0.916 47 H 0.108 0.892 48 H 0.117 0.883 49 H 0.100 0.900 50 H 0.084 0.916 51 H 0.227 0.773 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.252 -11.854 -17.410 21.312 hybrid contribution 0.111 0.334 0.317 0.474 sum 3.363 -11.520 -17.093 20.886 Atomic orbital electron populations 1.21652 0.93494 1.01850 1.02009 1.22030 0.96549 0.95395 0.94758 1.21647 1.00255 0.94508 1.02245 1.22376 1.00729 0.79163 0.97681 1.48045 1.71029 1.05605 1.08077 1.16341 0.76890 0.82077 0.85074 1.90737 1.53385 1.86168 1.14212 1.20604 1.18929 0.87936 0.92750 1.23567 1.00867 0.92430 0.94955 1.70173 1.20196 1.09415 1.21358 1.23442 1.03392 0.92597 0.84182 1.45173 1.51252 1.06036 1.07681 1.22097 1.02026 1.01097 0.76634 1.22059 0.98707 0.93854 1.03331 1.21619 0.99461 0.97533 0.97498 1.21606 0.98817 1.02150 0.93671 1.20242 1.00687 0.86504 1.00180 1.23739 1.01833 1.03313 0.77383 1.21226 0.95564 0.89445 0.86943 0.91451 1.42537 1.13177 1.79191 1.00343 1.19251 0.96859 1.38312 0.83597 0.90950 1.24740 0.95938 1.01650 0.97961 1.69650 1.06601 1.52159 1.29232 0.86206 0.77754 0.77899 0.84407 1.21708 1.21750 1.20554 0.90767 0.93295 0.92756 0.92756 0.93078 0.91219 0.91381 0.90774 0.78893 0.87637 0.89760 0.90114 0.89571 0.91049 0.91330 0.90308 0.91577 0.89228 0.88282 0.89953 0.91640 0.77265 0.93349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 7.94 37.16 0.30 -1.82 16 2 C -0.09 -1.32 0.87 -152.24 -0.13 -1.45 16 3 C -0.13 -1.77 8.68 37.16 0.32 -1.45 16 4 C 0.12 1.82 5.83 -2.41 -0.01 1.80 16 5 N -0.60 -9.72 3.31 -171.89 -0.57 -10.29 16 6 C 0.61 10.47 7.81 -12.82 -0.10 10.37 16 7 O -0.56 -10.43 15.25 5.21 0.08 -10.35 16 8 C -0.09 -1.43 6.88 -82.21 -0.57 -1.99 16 9 C 0.04 0.61 10.37 -17.47 -0.18 0.43 16 10 N -0.49 -8.29 11.20 -10.47 -0.12 -8.41 16 11 C 0.23 3.11 6.83 -155.37 -1.06 2.05 16 12 N -0.42 -5.92 3.10 -109.84 -0.34 -6.26 16 13 C 0.10 1.14 5.82 -4.03 -0.02 1.12 16 14 C -0.14 -1.08 5.55 -26.80 -0.15 -1.23 16 15 C -0.12 -0.75 5.68 -27.03 -0.15 -0.90 16 16 C -0.12 -0.90 5.67 -26.93 -0.15 -1.05 16 17 C -0.04 -0.34 5.54 -27.74 -0.15 -0.50 16 18 C 0.06 1.08 4.43 -3.07 -0.01 1.06 16 19 C 0.18 3.28 2.85 -66.10 -0.19 3.09 16 20 H 0.07 1.23 8.02 -51.93 -0.42 0.81 16 21 N -0.71 -16.16 5.08 -51.65 -0.26 -16.42 16 22 C -0.25 -6.42 9.98 -15.06 -0.15 -6.57 16 23 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 24 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 25 N -0.93 -26.72 13.06 55.49 0.72 -26.00 16 26 Si 0.91 21.62 29.55 -169.99 -5.02 16.60 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 29 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 30 H 0.07 1.33 6.34 -51.93 -0.33 1.00 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.93 7.91 -51.93 -0.41 0.52 16 33 H 0.05 0.68 8.07 -51.93 -0.42 0.26 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.07 0.93 7.99 -51.93 -0.41 0.52 16 37 H 0.07 1.09 8.00 -51.93 -0.42 0.67 16 38 H 0.19 3.30 4.47 -52.49 -0.23 3.06 16 39 H 0.11 1.33 6.67 -51.93 -0.35 0.98 16 40 H 0.08 0.88 7.81 -51.93 -0.41 0.48 16 41 H 0.08 0.68 5.68 -51.93 -0.30 0.38 16 42 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 45 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.07 0.59 7.84 -51.93 -0.41 0.18 16 47 H 0.09 0.70 6.30 -51.93 -0.33 0.38 16 48 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 49 H 0.08 1.55 6.66 -51.93 -0.35 1.21 16 50 H 0.07 1.09 7.12 -51.93 -0.37 0.72 16 51 H 0.39 9.43 5.26 -40.82 -0.21 9.22 16 52 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 393.49 15.07 5.93 5.93 Total: -1.00 -31.26 393.49 -10.37 -41.63 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -8.28 Total: 10.88 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -2.52 Total: 2.69 kcal Atomic # 7 Polarization: -66.81 SS G_CDS: -0.56 Total: -67.38 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.08 Total: -10.35 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.26 -10.37 -41.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995973241.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.160 kcal (2) G-P(sol) polarization free energy of solvation -31.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds