Wall clock time and date at job start Wed Apr 1 2020 04:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 110.88482 * 2 1 4 4 C 1.55132 * 111.19106 * 236.07132 * 2 1 3 5 5 N 1.47426 * 104.72162 * 279.19017 * 4 2 1 6 6 C 1.34776 * 125.64811 * 155.81398 * 5 4 2 7 7 O 1.21680 * 119.99991 * 4.43683 * 6 5 4 8 8 C 1.46763 * 120.00137 * 184.42966 * 6 5 4 9 9 C 1.36696 * 126.87949 * 354.24313 * 8 6 5 10 10 N 1.33303 * 107.79187 * 179.77261 * 9 8 6 11 11 C 1.30957 * 109.75542 * 359.76362 * 10 9 8 12 12 N 1.34541 * 108.95074 * 0.64263 * 11 10 9 13 13 C 1.46477 * 126.52559 * 178.91592 * 12 11 10 14 14 C 1.53038 * 109.57059 * 28.18912 * 13 12 11 15 15 C 1.52825 * 109.60335 * 270.59837 * 14 13 12 16 16 C 1.52584 * 110.29864 * 61.25189 * 15 14 13 17 17 C 1.50944 * 125.85711 * 181.06963 * 11 10 9 18 18 C 1.47019 * 108.70174 * 335.55612 * 5 4 2 19 19 C 1.54324 * 107.27317 * 1.28671 * 18 5 4 20 20 H 1.09006 * 110.71478 * 263.82826 * 19 18 5 21 21 N 1.46497 * 110.71929 * 140.55784 * 19 18 5 22 22 C 1.36939 * 120.00029 * 86.45546 * 21 19 18 23 23 H 1.08005 * 119.99937 * 359.97438 * 22 21 19 24 24 C 1.38807 * 120.00246 * 179.97438 * 22 21 19 25 25 N 1.31619 * 119.99975 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00275 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47154 * 90.00153 * 26 24 22 28 28 H 1.48506 * 109.47274 * 210.00164 * 26 24 22 29 29 H 1.48503 * 109.47089 * 330.00270 * 26 24 22 30 30 H 1.08999 * 109.47081 * 296.11398 * 1 2 3 31 31 H 1.09001 * 109.47157 * 56.11827 * 1 2 3 32 32 H 1.08997 * 109.47637 * 176.11811 * 1 2 3 33 33 H 1.08996 * 109.46597 * 183.88029 * 3 2 1 34 34 H 1.08995 * 109.46967 * 303.88396 * 3 2 1 35 35 H 1.09003 * 109.46713 * 63.88373 * 3 2 1 36 36 H 1.08994 * 110.49751 * 160.34912 * 4 2 1 37 37 H 1.08997 * 110.34310 * 37.95504 * 4 2 1 38 38 H 1.07998 * 126.09991 * 359.77790 * 9 8 6 39 39 H 1.08998 * 109.45468 * 148.22013 * 13 12 11 40 40 H 1.08996 * 109.45606 * 268.18173 * 13 12 11 41 41 H 1.09004 * 109.45226 * 30.64050 * 14 13 12 42 42 H 1.09006 * 109.44795 * 150.58573 * 14 13 12 43 43 H 1.09002 * 109.33170 * 181.50495 * 15 14 13 44 44 H 1.08993 * 109.33591 * 300.99161 * 15 14 13 45 45 H 1.09001 * 109.45589 * 153.43766 * 16 15 14 46 46 H 1.09001 * 109.45079 * 273.37734 * 16 15 14 47 47 H 1.09002 * 109.49999 * 106.59233 * 17 11 10 48 48 H 1.09002 * 109.53554 * 346.49592 * 17 11 10 49 49 H 1.08999 * 109.88489 * 120.70243 * 18 5 4 50 50 H 1.09004 * 109.88229 * 241.86749 * 18 5 4 51 51 H 0.97000 * 120.00008 * 266.45169 * 21 19 18 52 52 H 0.97002 * 120.00372 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0754 1.4295 0.0000 4 6 2.0908 -0.8073 -1.2001 5 7 2.0139 -2.2161 -0.7726 6 6 1.9470 -3.2834 -1.5930 7 8 2.0282 -3.1310 -2.7975 8 6 1.7763 -4.6294 -1.0335 9 6 1.7792 -4.9745 0.2891 10 7 1.5885 -6.2916 0.3669 11 6 1.4610 -6.7922 -0.8365 12 7 1.5813 -5.8002 -1.7374 13 6 1.5240 -5.9345 -3.1949 14 6 0.6516 -7.1362 -3.5650 15 6 1.5168 -8.3936 -3.6416 16 6 2.1591 -8.6775 -2.2869 17 6 1.2092 -8.2430 -1.1685 18 6 2.0285 -2.2644 0.6967 19 6 2.0861 -0.8075 1.2024 20 1 3.1133 -0.5156 1.4211 21 7 1.2343 -0.6342 2.3816 22 6 1.7296 -0.9030 3.6296 23 1 2.7482 -1.2433 3.7446 24 6 0.9227 -0.7383 4.7470 25 7 -0.3184 -0.3231 4.6070 26 14 1.5982 -1.1057 6.4494 27 1 2.2081 0.1241 7.0160 28 1 0.4947 -1.5628 7.3318 29 1 2.6289 -2.1705 6.3537 30 1 -0.3633 0.4523 0.9228 31 1 -0.3633 0.5729 -0.8532 32 1 -0.3634 -1.0252 -0.0696 33 1 3.1629 1.4033 -0.0695 34 1 1.6697 1.9732 -0.8531 35 1 1.7823 1.9302 0.9228 36 1 3.1252 -0.5271 -1.3987 37 1 1.4764 -0.6456 -2.0858 38 1 1.9120 -4.3004 1.1224 39 1 1.0969 -5.0292 -3.6263 40 1 2.5306 -6.0829 -3.5857 41 1 -0.1198 -7.2720 -2.8069 42 1 0.1822 -6.9595 -4.5328 43 1 0.8962 -9.2415 -3.9315 44 1 2.2977 -8.2494 -4.3881 45 1 2.3611 -9.7449 -2.1975 46 1 3.0940 -8.1232 -2.2052 47 1 0.1777 -8.3671 -1.4982 48 1 1.3846 -8.8551 -0.2838 49 1 1.1218 -2.7475 1.0608 50 1 2.9063 -2.8113 1.0409 51 1 0.3194 -0.3289 2.2784 52 1 -0.8825 -0.2084 5.3878 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995973241.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:34 Heat of formation + Delta-G solvation = 24.323927 kcal Electronic energy + Delta-G solvation = -31982.942943 eV Core-core repulsion = 27982.869590 eV Total energy + Delta-G solvation = -4000.073353 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.58258 -41.26180 -39.23190 -38.29380 -35.91438 -34.83329 -34.64883 -32.69804 -31.94527 -30.78504 -29.29136 -28.31878 -27.96788 -26.55070 -25.94535 -25.38399 -24.06487 -22.47717 -21.39372 -20.87588 -20.45214 -20.00468 -19.13528 -18.10807 -17.60183 -17.40208 -16.99232 -16.58186 -16.35291 -16.04554 -15.78478 -15.70219 -15.37840 -15.11778 -14.87067 -14.73244 -14.45876 -14.19113 -13.97003 -13.78640 -13.75700 -13.51393 -13.31134 -13.02352 -12.94068 -12.83410 -12.79834 -12.70488 -12.48992 -12.12388 -12.07897 -11.96158 -11.81601 -11.77046 -11.57829 -11.50316 -11.36678 -11.27956 -10.99717 -10.88280 -10.76539 -9.81099 -9.52626 -9.02140 -7.91744 -5.20382 0.16943 1.30193 1.51152 1.52386 1.59980 1.68530 2.09334 2.16075 2.59193 3.18920 3.26586 3.39149 3.52797 3.63232 3.68092 3.76881 3.78974 3.84574 4.02989 4.14201 4.15921 4.20879 4.23314 4.26866 4.31142 4.39335 4.42620 4.54919 4.61355 4.73027 4.76968 4.79177 4.81090 4.85694 4.86425 4.98026 5.02345 5.05071 5.07850 5.14186 5.15427 5.21565 5.25373 5.28249 5.34160 5.42342 5.43329 5.51992 5.58108 6.04888 6.28985 6.32641 6.77738 6.96351 7.38648 8.10613 8.34860 9.31194 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012140 B = 0.003241 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.914950 B = 8636.396116 C =10416.328259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.077 4.077 3 C -0.124 4.124 4 C 0.126 3.874 5 N -0.595 5.595 6 C 0.606 3.394 7 O -0.577 6.577 8 C -0.106 4.106 9 C 0.024 3.976 10 N -0.529 5.529 11 C 0.236 3.764 12 N -0.420 5.420 13 C 0.099 3.901 14 C -0.135 4.135 15 C -0.118 4.118 16 C -0.119 4.119 17 C -0.038 4.038 18 C 0.080 3.920 19 C 0.174 3.826 20 H 0.072 0.928 21 N -0.720 5.720 22 C -0.240 4.240 23 H 0.079 0.921 24 C -0.067 4.067 25 N -0.966 5.966 26 Si 0.965 3.035 27 H -0.288 1.288 28 H -0.301 1.301 29 H -0.270 1.270 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.036 0.964 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.048 0.952 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.184 0.816 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.074 0.926 42 H 0.106 0.894 43 H 0.095 0.905 44 H 0.076 0.924 45 H 0.104 0.896 46 H 0.046 0.954 47 H 0.110 0.890 48 H 0.104 0.896 49 H 0.061 0.939 50 H 0.069 0.931 51 H 0.381 0.619 52 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.149 -12.894 -19.677 23.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.078 4.078 3 C -0.181 4.181 4 C 0.004 3.996 5 N -0.326 5.326 6 C 0.396 3.604 7 O -0.460 6.460 8 C -0.223 4.223 9 C -0.131 4.131 10 N -0.248 5.248 11 C -0.026 4.026 12 N -0.100 5.100 13 C -0.022 4.022 14 C -0.173 4.173 15 C -0.155 4.155 16 C -0.157 4.157 17 C -0.077 4.077 18 C -0.046 4.046 19 C 0.063 3.937 20 H 0.090 0.910 21 N -0.361 5.361 22 C -0.371 4.371 23 H 0.097 0.903 24 C -0.260 4.260 25 N -0.616 5.616 26 Si 0.795 3.205 27 H -0.215 1.215 28 H -0.228 1.228 29 H -0.195 1.195 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.055 0.945 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.201 0.799 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.093 0.907 42 H 0.124 0.876 43 H 0.114 0.886 44 H 0.095 0.905 45 H 0.122 0.878 46 H 0.065 0.935 47 H 0.127 0.873 48 H 0.122 0.878 49 H 0.079 0.921 50 H 0.088 0.912 51 H 0.217 0.783 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.255 -13.361 -19.681 24.165 hybrid contribution -0.165 0.751 0.912 1.192 sum 4.090 -12.610 -18.769 22.979 Atomic orbital electron populations 1.21576 0.94066 1.00889 1.01836 1.21977 0.96006 0.96356 0.93461 1.21614 1.01285 0.92990 1.02247 1.22478 1.01924 0.77922 0.97291 1.48033 1.70805 1.06284 1.07458 1.16431 0.76625 0.82421 0.84914 1.90719 1.54258 1.86432 1.14590 1.20591 1.20161 0.88608 0.92923 1.23481 1.01567 0.92891 0.95113 1.70150 1.22011 1.09315 1.23334 1.24338 1.00719 0.94239 0.83297 1.45429 1.50496 1.05213 1.08910 1.22331 1.03075 1.02082 0.74697 1.22081 0.98161 0.93020 1.03998 1.21620 0.99707 0.97330 0.96882 1.21607 0.97334 1.03303 0.93474 1.20534 1.02432 0.83337 1.01400 1.23357 1.00991 1.02197 0.78074 1.21415 0.95154 0.90476 0.86623 0.91009 1.42644 1.13325 1.79194 1.00927 1.19623 0.96859 1.35897 0.84746 0.90285 1.25436 0.96380 1.03008 1.01193 1.69795 1.07811 1.54547 1.29461 0.85270 0.76913 0.77783 0.80574 1.21535 1.22755 1.19512 0.93135 0.90721 0.94507 0.91236 0.90626 0.93294 0.89494 0.90092 0.79896 0.89422 0.89199 0.90729 0.87557 0.88598 0.90487 0.87799 0.93517 0.87252 0.87797 0.92115 0.91249 0.78300 0.94128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.03 7.94 71.98 0.57 -3.46 16 2 C -0.08 -2.29 0.87 -50.71 -0.04 -2.33 16 3 C -0.12 -3.17 8.68 71.98 0.62 -2.55 16 4 C 0.13 3.51 5.83 86.93 0.51 4.02 16 5 N -0.59 -19.30 3.31 -815.96 -2.70 -22.00 16 6 C 0.61 20.97 7.81 86.47 0.68 21.64 16 7 O -0.58 -21.13 15.25 -4.29 -0.07 -21.20 16 8 C -0.11 -3.59 6.88 40.04 0.28 -3.31 16 9 C 0.02 0.84 10.37 84.11 0.87 1.72 16 10 N -0.53 -18.13 11.20 -187.04 -2.10 -20.22 16 11 C 0.24 6.41 6.83 138.23 0.94 7.35 16 12 N -0.42 -11.73 3.10 -501.43 -1.55 -13.28 16 13 C 0.10 2.08 5.82 86.40 0.50 2.58 16 14 C -0.14 -1.71 5.55 30.55 0.17 -1.54 16 15 C -0.12 -1.00 5.68 30.40 0.17 -0.83 16 16 C -0.12 -1.37 5.67 30.47 0.17 -1.20 16 17 C -0.04 -0.63 5.54 29.94 0.17 -0.46 16 18 C 0.08 2.78 4.43 86.73 0.38 3.16 16 19 C 0.17 6.32 2.85 46.18 0.13 6.45 16 20 H 0.07 2.57 8.02 -2.38 -0.02 2.55 16 21 N -0.72 -33.49 5.08 -317.34 -1.61 -35.10 16 22 C -0.24 -12.50 9.98 84.03 0.84 -11.66 16 23 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 24 C -0.07 -3.73 5.50 84.86 0.47 -3.27 16 25 N -0.97 -57.29 13.06 21.65 0.28 -57.01 16 26 Si 0.96 45.22 29.55 68.60 2.03 47.25 16 27 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 28 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 29 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 30 H 0.05 1.87 6.34 -2.39 -0.02 1.85 16 31 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.04 1.28 7.91 -2.39 -0.02 1.26 16 33 H 0.07 1.57 8.07 -2.39 -0.02 1.55 16 34 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.09 2.16 7.99 -2.39 -0.02 2.14 16 37 H 0.08 2.21 8.00 -2.39 -0.02 2.19 16 38 H 0.18 6.64 4.47 -2.91 -0.01 6.63 16 39 H 0.09 2.17 6.67 -2.39 -0.02 2.16 16 40 H 0.09 1.77 7.81 -2.39 -0.02 1.75 16 41 H 0.07 1.07 5.68 -2.38 -0.01 1.05 16 42 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 43 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.08 0.58 8.09 -2.39 -0.02 0.56 16 45 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.05 0.74 7.84 -2.39 -0.02 0.72 16 47 H 0.11 1.41 6.30 -2.39 -0.02 1.39 16 48 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 49 H 0.06 2.41 6.66 -2.39 -0.02 2.39 16 50 H 0.07 2.36 7.12 -2.38 -0.02 2.34 16 51 H 0.38 19.13 5.26 -92.71 -0.49 18.64 16 52 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -69.57 393.49 2.16 -67.41 By element: Atomic # 1 Polarization: 37.38 SS G_CDS: 0.45 Total: 37.83 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: 7.43 Total: 16.32 kcal Atomic # 7 Polarization: -139.93 SS G_CDS: -7.68 Total: -147.61 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.07 Total: -21.20 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -69.57 2.16 -67.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995973241.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.737 kcal (2) G-P(sol) polarization free energy of solvation -69.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds