Wall clock time and date at job start Wed Apr 1 2020 04:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 110.77697 * 2 1 4 4 C 1.54320 * 110.72323 * 123.24241 * 2 1 3 5 5 N 1.47014 * 107.40320 * 96.24822 * 4 2 1 6 6 C 1.34777 * 125.65073 * 178.82415 * 5 4 2 7 7 O 1.21684 * 119.99720 * 354.41793 * 6 5 4 8 8 C 1.46765 * 120.00056 * 174.40956 * 6 5 4 9 9 C 1.36689 * 126.88238 * 353.01989 * 8 6 5 10 10 N 1.33311 * 107.78771 * 179.66622 * 9 8 6 11 11 C 1.30960 * 109.75540 * 0.19214 * 10 9 8 12 12 N 1.34526 * 108.94922 * 0.30261 * 11 10 9 13 13 C 1.46483 * 126.52447 * 178.88159 * 12 11 10 14 14 C 1.53037 * 109.55778 * 28.21109 * 13 12 11 15 15 C 1.52826 * 109.63143 * 270.60963 * 14 13 12 16 16 C 1.52577 * 110.29696 * 61.25377 * 15 14 13 17 17 C 1.50935 * 125.83020 * 180.76263 * 11 10 9 18 18 C 1.47428 * 108.70386 * 358.86556 * 5 4 2 19 19 C 1.54906 * 104.83184 * 24.12348 * 18 5 4 20 20 H 1.09001 * 111.00292 * 81.10724 * 19 18 5 21 21 N 1.46498 * 111.00763 * 204.91705 * 19 18 5 22 22 C 1.36942 * 120.00097 * 273.55270 * 21 19 18 23 23 H 1.07998 * 119.99637 * 359.97438 * 22 21 19 24 24 C 1.38808 * 119.99765 * 179.97438 * 22 21 19 25 25 N 1.31620 * 120.00359 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99924 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47390 * 89.99836 * 26 24 22 28 28 H 1.48503 * 109.47338 * 209.99971 * 26 24 22 29 29 H 1.48498 * 109.47156 * 330.00046 * 26 24 22 30 30 H 1.08996 * 109.47287 * 298.20608 * 1 2 3 31 31 H 1.09000 * 109.47441 * 58.21149 * 1 2 3 32 32 H 1.09006 * 109.46630 * 178.21321 * 1 2 3 33 33 H 1.08997 * 109.47053 * 181.78911 * 3 2 1 34 34 H 1.08996 * 109.47301 * 301.79128 * 3 2 1 35 35 H 1.09002 * 109.46643 * 61.78592 * 3 2 1 36 36 H 1.08996 * 109.88385 * 336.75165 * 4 2 1 37 37 H 1.08999 * 109.88104 * 215.74516 * 4 2 1 38 38 H 1.08002 * 126.10281 * 359.78246 * 9 8 6 39 39 H 1.09004 * 109.45670 * 148.24030 * 13 12 11 40 40 H 1.08999 * 109.45686 * 268.18041 * 13 12 11 41 41 H 1.09000 * 109.44520 * 150.55725 * 14 13 12 42 42 H 1.09007 * 109.42089 * 30.64091 * 14 13 12 43 43 H 1.09002 * 109.33498 * 300.99789 * 15 14 13 44 44 H 1.09003 * 109.33034 * 181.50570 * 15 14 13 45 45 H 1.09002 * 109.45914 * 273.37923 * 16 15 14 46 46 H 1.09003 * 109.43802 * 153.42493 * 16 15 14 47 47 H 1.08999 * 109.50571 * 346.47823 * 17 11 10 48 48 H 1.09000 * 109.50709 * 106.55839 * 17 11 10 49 49 H 1.09002 * 110.36614 * 142.96734 * 18 5 4 50 50 H 1.09007 * 110.36360 * 265.28943 * 18 5 4 51 51 H 0.96999 * 120.00202 * 93.54568 * 21 19 18 52 52 H 0.96997 * 120.00290 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0727 1.4305 0.0000 4 6 2.0761 -0.7912 1.2072 5 7 2.3745 -2.1534 0.7415 6 6 2.8912 -3.1452 1.4937 7 8 3.2455 -2.9209 2.6360 8 6 3.0263 -4.4956 0.9352 9 6 2.5574 -4.9352 -0.2712 10 7 2.8969 -6.2181 -0.3972 11 6 3.5509 -6.6096 0.6678 12 7 3.6471 -5.5775 1.5253 13 6 4.2822 -5.5969 2.8451 14 6 5.3928 -6.6496 2.8638 15 6 4.8158 -7.9971 3.2964 16 6 3.7481 -8.4573 2.3084 17 6 4.1179 -7.9891 0.8991 18 6 2.0158 -2.2545 -0.6849 19 6 2.0791 -0.8000 -1.2138 20 1 3.1056 -0.5103 -1.4387 21 7 1.2195 -0.6302 -2.3879 22 6 1.7020 -0.9171 -3.6370 23 1 2.7163 -1.2680 -3.7566 24 6 0.8873 -0.7567 -4.7494 25 7 -0.3490 -0.3294 -4.6036 26 14 1.5456 -1.1473 -6.4533 27 1 1.2789 -2.5729 -6.7723 28 1 0.8723 -0.2816 -7.4546 29 1 3.0091 -0.8979 -6.4877 30 1 -0.3633 0.4857 0.9056 31 1 -0.3634 0.5413 -0.8735 32 1 -0.3633 -1.0272 -0.0320 33 1 3.1620 1.4059 -0.0321 34 1 1.6955 1.9623 -0.8734 35 1 1.7473 1.9425 0.9056 36 1 1.3264 -0.8256 1.9976 37 1 2.9853 -0.3191 1.5792 38 1 2.0111 -4.3474 -0.9941 39 1 4.7078 -4.6162 3.0577 40 1 3.5376 -5.8411 3.6028 41 1 6.1694 -6.3453 3.5655 42 1 5.8215 -6.7420 1.8658 43 1 4.3723 -7.8984 4.2871 44 1 5.6156 -8.7367 3.3338 45 1 2.7848 -8.0325 2.5909 46 1 3.6839 -9.5453 2.3244 47 1 3.7035 -8.6806 0.1654 48 1 5.2027 -7.9584 0.7981 49 1 2.7339 -2.8819 -1.2130 50 1 1.0079 -2.6547 -0.7951 51 1 0.3086 -0.3147 -2.2806 52 1 -0.9184 -0.2177 -5.3809 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995973260.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:39 Heat of formation + Delta-G solvation = 41.335209 kcal Electronic energy + Delta-G solvation = -31880.696906 eV Core-core repulsion = 27881.361218 eV Total energy + Delta-G solvation = -3999.335689 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.47213 -39.90620 -37.87055 -37.53595 -34.27472 -33.76488 -33.30884 -31.11046 -30.81840 -29.74754 -27.65868 -27.04756 -26.98972 -25.54190 -24.57725 -24.09354 -22.66841 -21.15169 -20.38264 -20.14501 -19.25206 -18.63858 -17.30176 -16.86275 -16.55095 -16.09894 -15.72833 -15.54895 -15.17144 -14.96940 -14.47875 -14.18535 -14.02412 -13.91848 -13.76996 -13.42792 -13.14872 -13.00639 -12.87386 -12.81322 -12.72728 -12.24421 -12.03967 -12.02218 -11.88967 -11.55152 -11.35139 -11.26059 -11.17368 -11.03177 -10.93857 -10.89673 -10.59310 -10.46977 -10.26055 -10.20602 -9.86505 -9.74495 -9.67192 -9.62270 -9.00110 -8.52574 -8.29145 -7.08119 -5.85099 -3.15498 1.38069 2.41127 2.85896 3.29552 3.41711 3.45576 3.48063 3.48327 4.10130 4.22923 4.30724 4.40985 4.50942 4.60861 4.74780 4.89164 4.93024 4.97251 5.04305 5.11091 5.15111 5.23570 5.27607 5.38313 5.44846 5.47575 5.53912 5.58734 5.63346 5.65601 5.68192 5.75221 5.76684 5.82598 5.89593 5.95838 5.99567 6.11895 6.12926 6.19998 6.28748 6.31892 6.39678 6.51546 6.61388 6.65264 6.69922 6.86761 7.06476 7.64686 7.68335 7.96712 8.26809 8.33359 9.45708 9.98536 10.33859 11.36857 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012129 B = 0.003182 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.878487 B = 8798.422555 C =10595.619748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.086 4.086 3 C -0.129 4.129 4 C 0.125 3.875 5 N -0.597 5.597 6 C 0.606 3.394 7 O -0.563 6.563 8 C -0.085 4.085 9 C 0.036 3.964 10 N -0.493 5.493 11 C 0.226 3.774 12 N -0.420 5.420 13 C 0.103 3.897 14 C -0.142 4.142 15 C -0.124 4.124 16 C -0.124 4.124 17 C -0.037 4.037 18 C 0.061 3.939 19 C 0.182 3.818 20 H 0.066 0.934 21 N -0.709 5.709 22 C -0.249 4.249 23 H 0.072 0.928 24 C -0.006 4.006 25 N -0.929 5.929 26 Si 0.907 3.093 27 H -0.288 1.288 28 H -0.292 1.292 29 H -0.281 1.281 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.050 0.950 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.194 0.806 39 H 0.105 0.895 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.066 0.934 46 H 0.078 0.922 47 H 0.099 0.901 48 H 0.090 0.910 49 H 0.080 0.920 50 H 0.076 0.924 51 H 0.390 0.610 52 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.763 -10.912 16.757 21.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.087 4.087 3 C -0.187 4.187 4 C 0.003 3.997 5 N -0.329 5.329 6 C 0.395 3.605 7 O -0.444 6.444 8 C -0.201 4.201 9 C -0.118 4.118 10 N -0.211 5.211 11 C -0.036 4.036 12 N -0.101 5.101 13 C -0.019 4.019 14 C -0.179 4.179 15 C -0.161 4.161 16 C -0.163 4.163 17 C -0.076 4.076 18 C -0.064 4.064 19 C 0.069 3.931 20 H 0.083 0.917 21 N -0.351 5.351 22 C -0.379 4.379 23 H 0.090 0.910 24 C -0.203 4.203 25 N -0.577 5.577 26 Si 0.737 3.263 27 H -0.215 1.215 28 H -0.218 1.218 29 H -0.207 1.207 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.210 0.790 39 H 0.123 0.877 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.099 0.901 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.084 0.916 46 H 0.097 0.903 47 H 0.117 0.883 48 H 0.108 0.892 49 H 0.098 0.902 50 H 0.094 0.906 51 H 0.227 0.773 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.950 -11.338 16.714 22.091 hybrid contribution 0.064 0.368 -0.309 0.485 sum 9.014 -10.970 16.405 21.696 Atomic orbital electron populations 1.21727 0.93387 1.02290 1.01788 1.21890 0.96579 0.95520 0.94721 1.21689 1.00466 0.94578 1.01916 1.22053 0.99994 0.80935 0.96744 1.48034 1.61485 1.10971 1.12397 1.16338 0.77664 0.82110 0.84339 1.90741 1.51771 1.83585 1.18316 1.20602 1.11199 0.90387 0.97942 1.23485 1.01081 0.91842 0.95399 1.70176 1.15785 1.12621 1.22556 1.23439 1.01145 0.91900 0.87114 1.45178 1.40968 1.08477 1.15483 1.22102 0.95842 1.02424 0.81488 1.22058 0.97586 0.94599 1.03695 1.21620 0.98756 0.96465 0.99279 1.21607 0.99388 1.01677 0.93589 1.20243 1.00844 0.88193 0.98326 1.23938 1.00679 1.03368 0.78448 1.21388 0.95393 0.89636 0.86673 0.91652 1.42443 1.13558 1.78576 1.00518 1.19244 0.97190 1.37831 0.83684 0.90995 1.24734 0.95987 1.01591 0.97960 1.69648 1.06661 1.51920 1.29435 0.86206 0.77980 0.77803 0.84287 1.21502 1.21794 1.20685 0.93208 0.90880 0.92450 0.92781 0.91307 0.93098 0.91666 0.91461 0.78969 0.87656 0.89712 0.89559 0.90125 0.91312 0.91039 0.91557 0.90291 0.88275 0.89227 0.90213 0.90598 0.77281 0.93343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 7.60 37.16 0.28 -1.78 16 2 C -0.09 -1.31 0.86 -152.54 -0.13 -1.45 16 3 C -0.13 -1.80 8.50 37.16 0.32 -1.48 16 4 C 0.13 1.87 6.04 -3.07 -0.02 1.85 16 5 N -0.60 -9.73 3.33 -172.03 -0.57 -10.30 16 6 C 0.61 10.38 7.81 -12.81 -0.10 10.28 16 7 O -0.56 -10.38 15.31 5.20 0.08 -10.30 16 8 C -0.09 -1.39 6.84 -82.21 -0.56 -1.95 16 9 C 0.04 0.60 10.19 -17.47 -0.18 0.42 16 10 N -0.49 -8.10 11.20 -10.48 -0.12 -8.22 16 11 C 0.23 3.04 6.83 -155.38 -1.06 1.98 16 12 N -0.42 -5.80 3.10 -109.84 -0.34 -6.14 16 13 C 0.10 1.12 5.81 -4.03 -0.02 1.09 16 14 C -0.14 -1.05 5.55 -26.80 -0.15 -1.19 16 15 C -0.12 -0.73 5.68 -27.04 -0.15 -0.88 16 16 C -0.12 -0.88 5.67 -26.93 -0.15 -1.03 16 17 C -0.04 -0.33 5.54 -27.75 -0.15 -0.49 16 18 C 0.06 1.05 4.49 -2.53 -0.01 1.04 16 19 C 0.18 3.34 2.93 -65.65 -0.19 3.14 16 20 H 0.07 1.25 8.03 -51.93 -0.42 0.83 16 21 N -0.71 -16.12 5.17 -51.23 -0.26 -16.39 16 22 C -0.25 -6.43 9.98 -15.06 -0.15 -6.58 16 23 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 24 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 25 N -0.93 -26.61 13.06 55.49 0.72 -25.88 16 26 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 29 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 1.25 6.66 -51.93 -0.35 0.91 16 32 H 0.06 0.92 7.46 -51.93 -0.39 0.53 16 33 H 0.05 0.72 8.13 -51.93 -0.42 0.30 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.94 7.84 -51.93 -0.41 0.54 16 37 H 0.07 0.98 7.82 -51.93 -0.41 0.57 16 38 H 0.19 3.19 4.83 -52.49 -0.25 2.94 16 39 H 0.11 1.30 6.70 -51.93 -0.35 0.95 16 40 H 0.08 0.87 7.82 -51.93 -0.41 0.47 16 41 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.65 5.68 -51.92 -0.30 0.35 16 43 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 44 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.07 0.58 7.84 -51.93 -0.41 0.17 16 46 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.09 0.67 6.31 -51.93 -0.33 0.35 16 49 H 0.08 1.39 5.96 -51.93 -0.31 1.08 16 50 H 0.08 1.36 7.33 -51.92 -0.38 0.98 16 51 H 0.39 9.34 5.38 -40.82 -0.22 9.12 16 52 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 392.88 15.07 5.92 5.92 Total: -1.00 -31.17 392.88 -10.39 -41.56 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -8.26 Total: 10.40 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -2.53 Total: 2.72 kcal Atomic # 7 Polarization: -66.35 SS G_CDS: -0.57 Total: -66.92 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.08 Total: -10.30 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.17 -10.39 -41.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995973260.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.891 kcal (2) G-P(sol) polarization free energy of solvation -31.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds