Wall clock time and date at job start Wed Apr 1 2020 04:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 110.77697 * 2 1 4 4 C 1.54320 * 110.72323 * 123.24241 * 2 1 3 5 5 N 1.47014 * 107.40320 * 96.24822 * 4 2 1 6 6 C 1.34777 * 125.65073 * 178.82415 * 5 4 2 7 7 O 1.21684 * 119.99720 * 354.41793 * 6 5 4 8 8 C 1.46765 * 120.00056 * 174.40956 * 6 5 4 9 9 C 1.36689 * 126.88238 * 353.01989 * 8 6 5 10 10 N 1.33311 * 107.78771 * 179.66622 * 9 8 6 11 11 C 1.30960 * 109.75540 * 0.19214 * 10 9 8 12 12 N 1.34526 * 108.94922 * 0.30261 * 11 10 9 13 13 C 1.46483 * 126.52447 * 178.88159 * 12 11 10 14 14 C 1.53037 * 109.55778 * 28.21109 * 13 12 11 15 15 C 1.52826 * 109.63143 * 270.60963 * 14 13 12 16 16 C 1.52577 * 110.29696 * 61.25377 * 15 14 13 17 17 C 1.50935 * 125.83020 * 180.76263 * 11 10 9 18 18 C 1.47428 * 108.70386 * 358.86556 * 5 4 2 19 19 C 1.54906 * 104.83184 * 24.12348 * 18 5 4 20 20 H 1.09001 * 111.00292 * 81.10724 * 19 18 5 21 21 N 1.46498 * 111.00763 * 204.91705 * 19 18 5 22 22 C 1.36942 * 120.00097 * 273.55270 * 21 19 18 23 23 H 1.07998 * 119.99637 * 359.97438 * 22 21 19 24 24 C 1.38808 * 119.99765 * 179.97438 * 22 21 19 25 25 N 1.31620 * 120.00359 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99924 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47390 * 89.99836 * 26 24 22 28 28 H 1.48503 * 109.47338 * 209.99971 * 26 24 22 29 29 H 1.48498 * 109.47156 * 330.00046 * 26 24 22 30 30 H 1.08996 * 109.47287 * 298.20608 * 1 2 3 31 31 H 1.09000 * 109.47441 * 58.21149 * 1 2 3 32 32 H 1.09006 * 109.46630 * 178.21321 * 1 2 3 33 33 H 1.08997 * 109.47053 * 181.78911 * 3 2 1 34 34 H 1.08996 * 109.47301 * 301.79128 * 3 2 1 35 35 H 1.09002 * 109.46643 * 61.78592 * 3 2 1 36 36 H 1.08996 * 109.88385 * 336.75165 * 4 2 1 37 37 H 1.08999 * 109.88104 * 215.74516 * 4 2 1 38 38 H 1.08002 * 126.10281 * 359.78246 * 9 8 6 39 39 H 1.09004 * 109.45670 * 148.24030 * 13 12 11 40 40 H 1.08999 * 109.45686 * 268.18041 * 13 12 11 41 41 H 1.09000 * 109.44520 * 150.55725 * 14 13 12 42 42 H 1.09007 * 109.42089 * 30.64091 * 14 13 12 43 43 H 1.09002 * 109.33498 * 300.99789 * 15 14 13 44 44 H 1.09003 * 109.33034 * 181.50570 * 15 14 13 45 45 H 1.09002 * 109.45914 * 273.37923 * 16 15 14 46 46 H 1.09003 * 109.43802 * 153.42493 * 16 15 14 47 47 H 1.08999 * 109.50571 * 346.47823 * 17 11 10 48 48 H 1.09000 * 109.50709 * 106.55839 * 17 11 10 49 49 H 1.09002 * 110.36614 * 142.96734 * 18 5 4 50 50 H 1.09007 * 110.36360 * 265.28943 * 18 5 4 51 51 H 0.96999 * 120.00202 * 93.54568 * 21 19 18 52 52 H 0.96997 * 120.00290 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0727 1.4305 0.0000 4 6 2.0761 -0.7912 1.2072 5 7 2.3745 -2.1534 0.7415 6 6 2.8912 -3.1452 1.4937 7 8 3.2455 -2.9209 2.6360 8 6 3.0263 -4.4956 0.9352 9 6 2.5574 -4.9352 -0.2712 10 7 2.8969 -6.2181 -0.3972 11 6 3.5509 -6.6096 0.6678 12 7 3.6471 -5.5775 1.5253 13 6 4.2822 -5.5969 2.8451 14 6 5.3928 -6.6496 2.8638 15 6 4.8158 -7.9971 3.2964 16 6 3.7481 -8.4573 2.3084 17 6 4.1179 -7.9891 0.8991 18 6 2.0158 -2.2545 -0.6849 19 6 2.0791 -0.8000 -1.2138 20 1 3.1056 -0.5103 -1.4387 21 7 1.2195 -0.6302 -2.3879 22 6 1.7020 -0.9171 -3.6370 23 1 2.7163 -1.2680 -3.7566 24 6 0.8873 -0.7567 -4.7494 25 7 -0.3490 -0.3294 -4.6036 26 14 1.5456 -1.1473 -6.4533 27 1 1.2789 -2.5729 -6.7723 28 1 0.8723 -0.2816 -7.4546 29 1 3.0091 -0.8979 -6.4877 30 1 -0.3633 0.4857 0.9056 31 1 -0.3634 0.5413 -0.8735 32 1 -0.3633 -1.0272 -0.0320 33 1 3.1620 1.4059 -0.0321 34 1 1.6955 1.9623 -0.8734 35 1 1.7473 1.9425 0.9056 36 1 1.3264 -0.8256 1.9976 37 1 2.9853 -0.3191 1.5792 38 1 2.0111 -4.3474 -0.9941 39 1 4.7078 -4.6162 3.0577 40 1 3.5376 -5.8411 3.6028 41 1 6.1694 -6.3453 3.5655 42 1 5.8215 -6.7420 1.8658 43 1 4.3723 -7.8984 4.2871 44 1 5.6156 -8.7367 3.3338 45 1 2.7848 -8.0325 2.5909 46 1 3.6839 -9.5453 2.3244 47 1 3.7035 -8.6806 0.1654 48 1 5.2027 -7.9584 0.7981 49 1 2.7339 -2.8819 -1.2130 50 1 1.0079 -2.6547 -0.7951 51 1 0.3086 -0.3147 -2.2806 52 1 -0.9184 -0.2177 -5.3809 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995973260.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:38 Heat of formation + Delta-G solvation = 23.269383 kcal Electronic energy + Delta-G solvation = -31881.480299 eV Core-core repulsion = 27881.361218 eV Total energy + Delta-G solvation = -4000.119082 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.59103 -41.26040 -39.25298 -38.29293 -35.93220 -34.86250 -34.66780 -32.70700 -31.95227 -30.78777 -29.28120 -28.28238 -27.97920 -26.56026 -25.95337 -25.38149 -24.06365 -22.54010 -21.41561 -20.87683 -20.41290 -20.00934 -19.17258 -18.07701 -17.69329 -17.34324 -16.96244 -16.61925 -16.39057 -15.99318 -15.82183 -15.61562 -15.25642 -15.24464 -14.89684 -14.61759 -14.47241 -14.33312 -14.12563 -13.86682 -13.74157 -13.40938 -13.27918 -13.02461 -12.91213 -12.87870 -12.75325 -12.68883 -12.59601 -12.12358 -12.06947 -11.94963 -11.81793 -11.77272 -11.56133 -11.54023 -11.34704 -11.28835 -11.00692 -10.88851 -10.76619 -9.84679 -9.53593 -9.00946 -7.92679 -5.21223 0.16155 1.29383 1.50588 1.52097 1.59038 1.67605 2.07291 2.15079 2.58402 3.17605 3.25954 3.38140 3.52919 3.63283 3.67299 3.74262 3.80326 3.85969 4.02726 4.10953 4.16016 4.21410 4.23735 4.25708 4.30152 4.39803 4.41156 4.55326 4.62190 4.73322 4.74718 4.79119 4.80212 4.85999 4.86887 4.95036 5.02540 5.04876 5.05595 5.15657 5.16316 5.17726 5.27099 5.29019 5.34422 5.41576 5.43470 5.50212 5.56930 6.04445 6.28627 6.30783 6.76954 6.95470 7.38166 8.09239 8.34978 9.29998 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012129 B = 0.003182 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.878487 B = 8798.422555 C =10595.619748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.076 4.076 3 C -0.125 4.125 4 C 0.127 3.873 5 N -0.596 5.596 6 C 0.606 3.394 7 O -0.577 6.577 8 C -0.106 4.106 9 C 0.026 3.974 10 N -0.528 5.528 11 C 0.237 3.763 12 N -0.419 5.419 13 C 0.099 3.901 14 C -0.135 4.135 15 C -0.118 4.118 16 C -0.120 4.120 17 C -0.038 4.038 18 C 0.078 3.922 19 C 0.175 3.825 20 H 0.060 0.940 21 N -0.717 5.717 22 C -0.241 4.241 23 H 0.075 0.925 24 C -0.064 4.064 25 N -0.963 5.963 26 Si 0.964 3.036 27 H -0.290 1.290 28 H -0.297 1.297 29 H -0.271 1.271 30 H 0.078 0.922 31 H 0.051 0.949 32 H 0.044 0.956 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.184 0.816 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.096 0.904 45 H 0.045 0.955 46 H 0.103 0.897 47 H 0.104 0.896 48 H 0.111 0.889 49 H 0.074 0.926 50 H 0.066 0.934 51 H 0.383 0.617 52 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.641 -12.353 18.709 24.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.077 4.077 3 C -0.182 4.182 4 C 0.005 3.995 5 N -0.327 5.327 6 C 0.396 3.604 7 O -0.460 6.460 8 C -0.222 4.222 9 C -0.129 4.129 10 N -0.247 5.247 11 C -0.025 4.025 12 N -0.100 5.100 13 C -0.022 4.022 14 C -0.172 4.172 15 C -0.156 4.156 16 C -0.158 4.158 17 C -0.077 4.077 18 C -0.047 4.047 19 C 0.064 3.936 20 H 0.078 0.922 21 N -0.358 5.358 22 C -0.373 4.373 23 H 0.093 0.907 24 C -0.257 4.257 25 N -0.613 5.613 26 Si 0.794 3.206 27 H -0.217 1.217 28 H -0.224 1.224 29 H -0.196 1.196 30 H 0.096 0.904 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.201 0.799 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.125 0.875 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.114 0.886 45 H 0.064 0.936 46 H 0.122 0.878 47 H 0.122 0.878 48 H 0.129 0.871 49 H 0.093 0.907 50 H 0.084 0.916 51 H 0.219 0.781 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 10.871 -12.782 18.714 25.135 hybrid contribution -0.475 0.763 -0.823 1.219 sum 10.396 -12.019 17.891 23.929 Atomic orbital electron populations 1.21669 0.93295 1.01509 1.02173 1.21828 0.96553 0.96184 0.93114 1.21661 1.00770 0.93326 1.02462 1.22128 1.00757 0.80041 0.96539 1.48011 1.61336 1.11568 1.11816 1.16441 0.77347 0.82447 0.84148 1.90723 1.52546 1.83897 1.18785 1.20552 1.12507 0.90856 0.98299 1.23401 1.01473 0.92361 0.95634 1.70160 1.17565 1.12555 1.24424 1.24335 0.99115 0.93219 0.85845 1.45431 1.40460 1.07741 1.16377 1.22334 0.96856 1.02946 0.80063 1.22079 0.96646 0.94370 1.04110 1.21621 0.99031 0.95886 0.99032 1.21610 0.98750 1.03045 0.92380 1.20534 1.01866 0.85409 0.99865 1.23557 0.99997 1.02070 0.79112 1.21521 0.94548 0.90931 0.86612 0.92192 1.42512 1.13746 1.78606 1.00954 1.19569 0.97067 1.35741 0.84936 0.90721 1.25407 0.96415 1.02825 1.01094 1.69782 1.07755 1.54068 1.29729 0.85287 0.77780 0.77051 0.80521 1.21739 1.22405 1.19617 0.90353 0.93003 0.93666 0.92160 0.93096 0.90353 0.90563 0.90423 0.79934 0.89376 0.89333 0.87537 0.90566 0.90592 0.88560 0.93619 0.87834 0.87789 0.87099 0.90748 0.91609 0.78090 0.94014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.91 7.60 71.98 0.55 -3.36 16 2 C -0.08 -2.26 0.86 -50.91 -0.04 -2.31 16 3 C -0.12 -3.30 8.50 71.98 0.61 -2.69 16 4 C 0.13 3.64 6.04 86.73 0.52 4.16 16 5 N -0.60 -19.37 3.33 -816.41 -2.72 -22.09 16 6 C 0.61 20.78 7.81 86.47 0.68 21.45 16 7 O -0.58 -21.03 15.31 -4.30 -0.07 -21.10 16 8 C -0.11 -3.49 6.84 40.04 0.27 -3.21 16 9 C 0.03 0.89 10.19 84.11 0.86 1.74 16 10 N -0.53 -17.56 11.20 -187.06 -2.10 -19.65 16 11 C 0.24 6.22 6.83 138.23 0.94 7.17 16 12 N -0.42 -11.40 3.10 -501.43 -1.55 -12.96 16 13 C 0.10 2.02 5.81 86.39 0.50 2.52 16 14 C -0.13 -1.61 5.55 30.55 0.17 -1.44 16 15 C -0.12 -0.95 5.68 30.40 0.17 -0.78 16 16 C -0.12 -1.33 5.67 30.47 0.17 -1.16 16 17 C -0.04 -0.59 5.54 29.94 0.17 -0.43 16 18 C 0.08 2.75 4.49 86.85 0.39 3.14 16 19 C 0.17 6.49 2.93 46.47 0.14 6.63 16 20 H 0.06 2.30 8.03 -2.39 -0.02 2.28 16 21 N -0.72 -33.37 5.17 -315.98 -1.63 -35.00 16 22 C -0.24 -12.68 9.98 84.03 0.84 -11.85 16 23 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 24 C -0.06 -3.56 5.50 84.86 0.47 -3.09 16 25 N -0.96 -56.61 13.06 21.65 0.28 -56.33 16 26 Si 0.96 45.23 29.55 68.60 2.03 47.25 16 27 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 28 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 29 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 30 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.05 1.81 6.66 -2.39 -0.02 1.79 16 32 H 0.04 1.46 7.46 -2.38 -0.02 1.44 16 33 H 0.06 1.52 8.13 -2.39 -0.02 1.50 16 34 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.08 1.65 8.14 -2.39 -0.02 1.64 16 36 H 0.08 2.05 7.84 -2.39 -0.02 2.04 16 37 H 0.08 2.10 7.82 -2.39 -0.02 2.08 16 38 H 0.18 6.44 4.83 -2.91 -0.01 6.42 16 39 H 0.09 2.12 6.70 -2.38 -0.02 2.10 16 40 H 0.09 1.73 7.82 -2.39 -0.02 1.71 16 41 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.08 1.01 5.68 -2.38 -0.01 0.99 16 43 H 0.08 0.56 8.09 -2.39 -0.02 0.54 16 44 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 45 H 0.04 0.71 7.84 -2.39 -0.02 0.69 16 46 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 48 H 0.11 1.31 6.31 -2.39 -0.02 1.30 16 49 H 0.07 2.69 5.96 -2.39 -0.01 2.68 16 50 H 0.07 2.45 7.33 -2.38 -0.02 2.44 16 51 H 0.38 18.94 5.38 -92.71 -0.50 18.44 16 52 H 0.25 14.45 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -68.77 392.88 2.08 -66.69 By element: Atomic # 1 Polarization: 36.26 SS G_CDS: 0.44 Total: 36.69 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: 7.40 Total: 16.49 kcal Atomic # 7 Polarization: -138.31 SS G_CDS: -7.72 Total: -146.03 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.07 Total: -21.10 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -68.77 2.08 -66.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995973260.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.957 kcal (2) G-P(sol) polarization free energy of solvation -68.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds