Wall clock time and date at job start Wed Apr 1 2020 04:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34256 * 125.75506 * 2 1 4 4 C 1.38043 * 107.41783 * 179.73453 * 3 2 1 5 5 C 1.47432 * 126.41775 * 180.26206 * 4 3 2 6 6 O 1.21606 * 120.00183 * 180.18887 * 5 4 3 7 7 N 1.34778 * 119.99811 * 0.18139 * 5 4 3 8 8 C 1.47023 * 125.64718 * 0.03430 * 7 5 4 9 9 C 1.54329 * 107.26978 * 181.01913 * 8 7 5 10 10 H 1.09001 * 110.71860 * 140.72899 * 9 8 7 11 11 N 1.46499 * 110.72069 * 263.82811 * 9 8 7 12 12 C 1.36934 * 119.99975 * 273.55026 * 11 9 8 13 13 H 1.08007 * 120.00137 * 359.97438 * 12 11 9 14 14 C 1.38811 * 120.00204 * 179.97438 * 12 11 9 15 15 N 1.31621 * 119.99946 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00190 * 179.97438 * 14 12 11 17 17 H 1.48509 * 109.46960 * 60.00628 * 16 14 12 18 18 H 1.48497 * 109.47325 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47643 * 300.00619 * 16 14 12 20 20 C 1.55163 * 102.94057 * 22.19047 * 9 8 7 21 21 C 1.53000 * 111.00349 * 82.57256 * 20 9 8 22 22 C 1.52998 * 110.99942 * 206.38631 * 20 9 8 23 23 C 1.47418 * 125.64627 * 179.71966 * 7 5 4 24 24 C 1.41291 * 107.17187 * 0.41348 * 4 3 2 25 25 C 1.50697 * 125.99165 * 179.83683 * 24 4 3 26 26 C 1.53786 * 113.61519 * 140.58321 * 25 24 4 27 27 C 1.54049 * 86.98426 * 140.01979 * 26 25 24 28 28 C 1.53781 * 113.61630 * 238.19269 * 25 24 4 29 29 N 1.30450 * 108.01955 * 359.58132 * 24 4 3 30 30 H 1.08997 * 109.46944 * 269.97385 * 1 2 3 31 31 H 1.08998 * 109.46478 * 29.98221 * 1 2 3 32 32 H 1.09000 * 109.46878 * 149.97316 * 1 2 3 33 33 H 1.07996 * 126.29095 * 0.02562 * 3 2 1 34 34 H 1.08997 * 109.88073 * 300.43533 * 8 7 5 35 35 H 1.08997 * 109.88681 * 61.44482 * 8 7 5 36 36 H 0.97000 * 120.00057 * 93.54174 * 11 9 8 37 37 H 0.96999 * 119.99964 * 179.97438 * 15 14 12 38 38 H 1.09002 * 109.47090 * 59.99867 * 21 20 9 39 39 H 1.08994 * 109.46917 * 179.97438 * 21 20 9 40 40 H 1.09000 * 109.47312 * 300.00185 * 21 20 9 41 41 H 1.08999 * 109.47364 * 60.00355 * 22 20 9 42 42 H 1.09004 * 109.46921 * 180.02562 * 22 20 9 43 43 H 1.09002 * 109.47139 * 299.99717 * 22 20 9 44 44 H 1.09004 * 110.36807 * 274.74820 * 23 7 5 45 45 H 1.08993 * 110.36999 * 37.07266 * 23 7 5 46 46 H 1.09002 * 112.84782 * 9.38911 * 25 24 4 47 47 H 1.08992 * 113.61675 * 254.61723 * 26 25 24 48 48 H 1.09000 * 113.60973 * 25.52011 * 26 25 24 49 49 H 1.09005 * 113.62125 * 220.02158 * 27 26 25 50 50 H 1.08996 * 113.68970 * 89.12734 * 27 26 25 51 51 H 1.08999 * 113.61567 * 334.48200 * 28 25 24 52 52 H 1.08998 * 113.61196 * 105.38554 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2495 1.0895 0.0000 4 6 3.5599 0.6552 0.0061 5 6 4.7639 1.5060 0.0138 6 8 5.8682 0.9969 0.0152 7 7 4.6406 2.8482 0.0190 8 6 3.3725 3.5921 0.0186 9 6 3.7230 5.0950 -0.0004 10 1 3.0379 5.6426 -0.6477 11 7 3.7058 5.6484 1.3559 12 6 2.5328 6.1070 1.8934 13 1 1.6204 6.0611 1.3172 14 6 2.5163 6.6309 3.1787 15 7 3.6282 6.6874 3.8807 16 14 0.9163 7.2571 3.9116 17 1 -0.0716 6.1495 3.9631 18 1 1.1655 7.7628 5.2854 19 1 0.3828 8.3573 3.0689 20 6 5.1620 5.1088 -0.5807 21 6 5.1378 5.0365 -2.1088 22 6 5.9331 6.3417 -0.1051 23 6 5.7549 3.8132 0.0327 24 6 3.5312 -0.7574 0.0001 25 6 4.7322 -1.6676 0.0001 26 6 4.5629 -2.9110 0.8890 27 6 5.2773 -3.7028 -0.2226 28 6 4.7785 -2.6265 -1.2012 29 7 2.2827 -1.1356 0.0000 30 1 -0.3633 -0.0005 1.0276 31 1 -0.3632 0.8902 -0.5136 32 1 -0.3633 -0.8897 -0.5143 33 1 1.9166 2.1169 0.0004 34 1 2.7925 3.3355 -0.8679 35 1 2.8023 3.3534 0.9163 36 1 4.5252 5.6899 1.8733 37 1 3.6167 7.0538 4.7788 38 1 4.5930 5.8937 -2.5045 39 1 6.1591 5.0483 -2.4893 40 1 4.6438 4.1165 -2.4212 41 1 5.9952 6.3340 0.9831 42 1 6.9381 6.3267 -0.5268 43 1 5.4153 7.2431 -0.4331 44 1 6.0887 3.9929 1.0547 45 1 6.5805 3.4482 -0.5782 46 1 5.6676 -1.1340 0.1692 47 1 5.1249 -2.8609 1.8215 48 1 3.5235 -3.2048 1.0353 49 1 4.8479 -4.6886 -0.4017 50 1 6.3617 -3.7267 -0.1156 51 1 3.7980 -2.8427 -1.6253 52 1 5.5145 -2.3468 -1.9550 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995980032.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:53 Heat of formation + Delta-G solvation = 82.326558 kcal Electronic energy + Delta-G solvation = -31871.002560 eV Core-core repulsion = 27873.444390 eV Total energy + Delta-G solvation = -3997.558170 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.48060 -39.68091 -38.42699 -37.57111 -33.95973 -33.32650 -33.21504 -30.83054 -30.32870 -28.02008 -27.90214 -26.75120 -26.26686 -25.56618 -24.85370 -23.96494 -22.38137 -21.07585 -20.83081 -19.37868 -18.83397 -18.60757 -17.25474 -16.57548 -16.16725 -15.85038 -15.46737 -15.45595 -15.10701 -14.82594 -14.65208 -14.12409 -13.92139 -13.67322 -13.27356 -13.14441 -13.00429 -12.80521 -12.52157 -12.48703 -12.41383 -12.39953 -12.01152 -11.97074 -11.81110 -11.59785 -11.49636 -11.06993 -11.00326 -10.94306 -10.69508 -10.57458 -10.45739 -10.41537 -10.31534 -10.28940 -9.86490 -9.70677 -9.40022 -9.24552 -9.02849 -8.58853 -8.13043 -7.10597 -5.88193 -3.18449 1.62770 2.24733 2.35176 3.34797 3.39560 3.41942 3.45085 3.74099 4.30567 4.47122 4.58762 4.72516 4.73527 4.75530 4.81391 4.97053 5.03110 5.07388 5.12485 5.22593 5.24622 5.33300 5.40654 5.50375 5.60435 5.60708 5.63870 5.70250 5.72816 5.79698 5.88723 5.90781 5.92639 5.99234 6.00346 6.09372 6.20646 6.22125 6.22593 6.23919 6.34559 6.39312 6.48309 6.55966 6.62136 6.70338 6.74485 6.85786 6.92006 7.56942 7.65656 7.99764 8.29515 8.62765 9.41345 9.96661 10.31353 11.33698 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010921 B = 0.003412 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.170397 B = 8204.249998 C = 9532.977098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.366 5.366 3 C 0.092 3.908 4 C -0.279 4.279 5 C 0.607 3.393 6 O -0.556 6.556 7 N -0.602 5.602 8 C 0.065 3.935 9 C 0.179 3.821 10 H 0.070 0.930 11 N -0.711 5.711 12 C -0.249 4.249 13 H 0.071 0.929 14 C -0.006 4.006 15 N -0.927 5.927 16 Si 0.906 3.094 17 H -0.286 1.286 18 H -0.291 1.291 19 H -0.285 1.285 20 C -0.089 4.089 21 C -0.129 4.129 22 C -0.125 4.125 23 C 0.124 3.876 24 C 0.143 3.857 25 C -0.041 4.041 26 C -0.130 4.130 27 C -0.140 4.140 28 C -0.125 4.125 29 N -0.304 5.304 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.196 0.804 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.388 0.612 37 H 0.257 0.743 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.069 0.931 42 H 0.045 0.955 43 H 0.060 0.940 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.131 0.869 47 H 0.068 0.932 48 H 0.084 0.916 49 H 0.066 0.934 50 H 0.081 0.919 51 H 0.080 0.920 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.693 -12.704 -11.711 17.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.144 5.144 3 C -0.059 4.059 4 C -0.294 4.294 5 C 0.397 3.603 6 O -0.437 6.437 7 N -0.334 5.334 8 C -0.061 4.061 9 C 0.067 3.933 10 H 0.087 0.913 11 N -0.352 5.352 12 C -0.380 4.380 13 H 0.089 0.911 14 C -0.203 4.203 15 N -0.574 5.574 16 Si 0.737 3.263 17 H -0.213 1.213 18 H -0.217 1.217 19 H -0.212 1.212 20 C -0.090 4.090 21 C -0.187 4.187 22 C -0.183 4.183 23 C 0.001 3.999 24 C -0.024 4.024 25 C -0.061 4.061 26 C -0.168 4.168 27 C -0.177 4.177 28 C -0.163 4.163 29 N -0.124 5.124 30 H 0.097 0.903 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.212 0.788 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.223 0.777 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.064 0.936 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.149 0.851 47 H 0.087 0.913 48 H 0.103 0.897 49 H 0.085 0.915 50 H 0.100 0.900 51 H 0.099 0.901 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.279 -13.948 -11.619 18.296 hybrid contribution -0.520 1.224 0.808 1.556 sum -2.799 -12.724 -10.811 16.930 Atomic orbital electron populations 1.21957 0.73731 1.04678 1.03903 1.48298 1.06941 1.03921 1.55213 1.24043 0.90746 0.94300 0.96795 1.20200 0.92640 0.93821 1.22748 1.16851 0.87501 0.80049 0.75890 1.90661 1.27061 1.72978 1.52964 1.48148 1.08718 1.04237 1.72283 1.23505 0.86143 0.96366 1.00068 1.21228 0.93430 0.89734 0.88936 0.91261 1.42450 1.09572 1.72128 1.11092 1.19143 0.87866 1.33850 0.97146 0.91140 1.24743 0.96946 1.01574 0.97068 1.69641 1.25547 1.50771 1.11438 0.86298 0.82949 0.78667 0.78373 1.21316 1.21688 1.21194 1.22044 0.97139 0.94690 0.95164 1.21673 1.01485 1.01534 0.93981 1.21576 0.98080 0.96269 1.02370 1.22281 0.89344 0.87397 1.00841 1.22149 0.92866 0.92007 0.95390 1.21379 0.94722 0.92174 0.97810 1.22995 1.01335 0.95131 0.97319 1.22839 1.00413 0.97714 0.96757 1.22892 1.01644 0.95627 0.96183 1.77013 1.01263 1.07468 1.26698 0.90265 0.89057 0.89140 0.78755 0.92851 0.90425 0.77656 0.93270 0.92391 0.92771 0.92861 0.91202 0.93589 0.92138 0.91285 0.91113 0.85132 0.91322 0.89697 0.91502 0.90010 0.90125 0.91236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.80 11.44 59.85 0.68 1.48 16 2 N -0.37 -4.75 3.98 -67.60 -0.27 -5.02 16 3 C 0.09 1.29 9.97 -16.56 -0.17 1.12 16 4 C -0.28 -4.62 6.10 -105.06 -0.64 -5.26 16 5 C 0.61 11.07 7.85 -12.52 -0.10 10.97 16 6 O -0.56 -11.23 14.95 5.27 0.08 -11.15 16 7 N -0.60 -10.28 3.31 -171.65 -0.57 -10.85 16 8 C 0.07 1.05 4.41 -3.06 -0.01 1.04 16 9 C 0.18 3.12 2.86 -66.09 -0.19 2.93 16 10 H 0.07 1.18 8.03 -51.93 -0.42 0.77 16 11 N -0.71 -15.90 4.61 -51.65 -0.24 -16.14 16 12 C -0.25 -6.25 9.98 -15.06 -0.15 -6.40 16 13 H 0.07 1.68 7.83 -52.48 -0.41 1.27 16 14 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 15 N -0.93 -26.48 13.06 55.49 0.72 -25.76 16 16 Si 0.91 21.08 29.55 -169.99 -5.02 16.05 16 17 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 20 C -0.09 -1.35 0.83 -152.24 -0.13 -1.48 16 21 C -0.13 -1.64 8.59 37.16 0.32 -1.32 16 22 C -0.13 -1.93 8.22 37.16 0.31 -1.63 16 23 C 0.12 2.06 5.82 -2.41 -0.01 2.04 16 24 C 0.14 2.27 6.31 -82.02 -0.52 1.75 16 25 C -0.04 -0.58 3.97 -90.96 -0.36 -0.94 16 26 C -0.13 -1.56 7.64 -25.77 -0.20 -1.76 16 27 C -0.14 -1.42 8.09 -25.78 -0.21 -1.63 16 28 C -0.13 -1.47 7.63 -25.92 -0.20 -1.67 16 29 N -0.30 -4.54 12.13 33.89 0.41 -4.13 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.20 2.42 4.42 -52.49 -0.23 2.18 16 34 H 0.05 0.72 6.84 -51.93 -0.36 0.37 16 35 H 0.08 1.39 6.91 -51.93 -0.36 1.03 16 36 H 0.39 9.44 6.10 -40.82 -0.25 9.19 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.05 0.68 7.91 -51.93 -0.41 0.27 16 41 H 0.07 1.25 6.38 -51.93 -0.33 0.92 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.07 1.26 7.99 -51.93 -0.41 0.85 16 45 H 0.07 1.14 7.95 -51.93 -0.41 0.73 16 46 H 0.13 2.08 5.99 -51.93 -0.31 1.77 16 47 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 48 H 0.08 1.05 7.79 -51.93 -0.40 0.65 16 49 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 50 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 51 H 0.08 0.96 8.09 -51.93 -0.42 0.54 16 52 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 408.23 15.07 6.15 6.15 Total: -1.00 -31.42 408.23 -8.91 -40.34 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: -8.51 Total: 11.51 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -1.67 Total: -1.01 kcal Atomic # 7 Polarization: -61.95 SS G_CDS: 0.06 Total: -61.89 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.08 Total: -11.15 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -31.42 -8.91 -40.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995980032.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.662 kcal (2) G-P(sol) polarization free energy of solvation -31.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds