Wall clock time and date at job start Wed Apr 1 2020 04:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40294 * 126.09433 * 2 1 4 4 C 1.31070 * 108.26829 * 179.97438 * 3 2 1 5 5 C 1.39290 * 108.07835 * 0.37820 * 4 3 2 6 6 C 1.34324 * 126.08966 * 180.31273 * 2 1 3 7 7 C 1.50832 * 128.03570 * 359.79466 * 6 2 1 8 8 C 1.53358 * 108.38786 * 196.61419 * 7 6 2 9 9 H 1.08996 * 109.45152 * 70.09652 * 8 7 6 10 10 C 1.50699 * 109.46378 * 190.07327 * 8 7 6 11 11 O 1.21288 * 119.99941 * 85.17591 * 10 8 7 12 12 N 1.34772 * 120.00079 * 265.17159 * 10 8 7 13 13 C 1.47022 * 125.64949 * 5.09765 * 12 10 8 14 14 C 1.54324 * 107.27348 * 181.02189 * 13 12 10 15 15 H 1.08996 * 110.72072 * 263.83095 * 14 13 12 16 16 N 1.46499 * 110.71855 * 140.73011 * 14 13 12 17 17 C 1.36939 * 119.99881 * 86.45522 * 16 14 13 18 18 H 1.08000 * 119.99846 * 0.02562 * 17 16 14 19 19 C 1.38809 * 120.00010 * 179.97438 * 17 16 14 20 20 N 1.31618 * 120.00314 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00026 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47106 * 90.00463 * 21 19 17 23 23 H 1.48500 * 109.47025 * 210.00325 * 21 19 17 24 24 H 1.48498 * 109.47043 * 330.00133 * 21 19 17 25 25 C 1.55157 * 102.94315 * 22.19309 * 14 13 12 26 26 C 1.52997 * 111.00651 * 82.57046 * 25 14 13 27 27 C 1.52993 * 111.00502 * 206.38553 * 25 14 13 28 28 C 1.47426 * 125.64953 * 184.78766 * 12 10 8 29 29 C 1.53108 * 109.51578 * 310.08724 * 8 7 6 30 30 C 1.50847 * 127.89310 * 179.66071 * 5 4 3 31 31 H 1.09003 * 109.47176 * 269.68976 * 1 2 3 32 32 H 1.09000 * 109.47335 * 29.68708 * 1 2 3 33 33 H 1.09003 * 109.47084 * 149.68828 * 1 2 3 34 34 H 1.08000 * 125.95408 * 180.13734 * 4 3 2 35 35 H 1.08998 * 109.67737 * 316.35052 * 7 6 2 36 36 H 1.08998 * 109.67834 * 76.90120 * 7 6 2 37 37 H 1.09007 * 109.88079 * 300.44063 * 13 12 10 38 38 H 1.08996 * 109.88545 * 61.59794 * 13 12 10 39 39 H 0.96996 * 120.00632 * 266.45309 * 16 14 13 40 40 H 0.97004 * 120.00193 * 179.97438 * 20 19 17 41 41 H 1.09004 * 109.46867 * 60.00142 * 26 25 14 42 42 H 1.09001 * 109.47345 * 180.02562 * 26 25 14 43 43 H 1.09003 * 109.47229 * 300.00135 * 26 25 14 44 44 H 1.09003 * 109.47352 * 60.00013 * 27 25 14 45 45 H 1.09005 * 109.47392 * 179.97438 * 27 25 14 46 46 H 1.08998 * 109.47340 * 300.00142 * 27 25 14 47 47 H 1.09002 * 110.36600 * 274.74793 * 28 12 10 48 48 H 1.08995 * 110.36759 * 37.06974 * 28 12 10 49 49 H 1.08993 * 109.46625 * 310.26588 * 29 8 7 50 50 H 1.08994 * 109.45784 * 190.27563 * 29 8 7 51 51 H 1.08997 * 109.68608 * 316.34089 * 30 5 4 52 52 H 1.09001 * 109.68185 * 76.90692 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2915 1.1336 0.0000 4 6 3.5393 0.7324 0.0006 5 6 3.5454 -0.6605 -0.0078 6 6 2.2562 -1.0855 -0.0059 7 6 1.8437 -2.5362 -0.0096 8 6 3.0539 -3.3844 0.4002 9 1 3.2699 -3.2223 1.4562 10 6 2.7476 -4.8416 0.1681 11 8 2.9254 -5.3317 -0.9270 12 7 2.2762 -5.6001 1.1774 13 6 1.9160 -5.1152 2.5178 14 6 1.4530 -6.3376 3.3382 15 1 0.3668 -6.4261 3.3187 16 7 1.9394 -6.2506 4.7173 17 6 1.2160 -5.5653 5.6566 18 1 0.2866 -5.0894 5.3808 19 6 1.6767 -5.4833 6.9635 20 7 2.8090 -6.0638 7.2998 21 14 0.6894 -4.5492 8.2450 22 1 -0.2678 -5.4741 8.9034 23 1 1.6103 -3.9827 9.2630 24 1 -0.0590 -3.4480 7.5873 25 6 2.1141 -7.5270 2.5929 26 6 3.5679 -7.7102 3.0330 27 6 1.3153 -8.8155 2.7990 28 6 2.0301 -7.0525 1.1183 29 6 4.2698 -2.9790 -0.4374 30 6 4.7399 -1.5816 -0.0176 31 1 -0.3634 -0.0056 1.0277 32 1 -0.3634 0.8928 -0.5090 33 1 -0.3633 -0.8872 -0.5187 34 1 4.4106 1.3706 0.0028 35 1 1.0310 -2.6885 0.7007 36 1 1.5167 -2.8223 -1.0092 37 1 2.7843 -4.6577 2.9922 38 1 1.1060 -4.3896 2.4443 39 1 2.7739 -6.6784 4.9652 40 1 3.1311 -6.0062 8.2130 41 1 3.6010 -7.9074 4.1045 42 1 4.0074 -8.5501 2.4949 43 1 4.1312 -6.8033 2.8129 44 1 0.3039 -8.6814 2.4153 45 1 1.8004 -9.6330 2.2656 46 1 1.2722 -9.0501 3.8625 47 1 1.0402 -7.2532 0.7085 48 1 2.7965 -7.5430 0.5182 49 1 3.9962 -2.9664 -1.4924 50 1 5.0750 -3.6963 -0.2793 51 1 5.4816 -1.2137 -0.7265 52 1 5.1761 -1.6277 0.9803 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996203253.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:29 Heat of formation + Delta-G solvation = 47.094308 kcal Electronic energy + Delta-G solvation = -31794.503057 eV Core-core repulsion = 27795.417102 eV Total energy + Delta-G solvation = -3999.085955 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.67950 -40.16955 -38.29470 -36.07243 -34.17852 -33.83031 -33.15167 -30.88003 -30.47939 -29.82634 -27.59596 -27.04229 -26.77616 -26.44733 -24.12500 -23.77366 -22.35052 -21.36971 -21.01604 -19.19154 -18.86504 -18.36034 -17.29883 -17.00834 -16.65470 -15.88286 -15.76596 -15.09910 -14.91842 -14.48250 -14.32523 -14.12969 -13.91733 -13.77762 -13.75104 -13.40983 -13.07640 -13.00875 -12.87067 -12.73448 -12.57574 -12.47880 -12.24528 -12.04981 -11.94775 -11.65855 -11.58267 -11.31377 -11.09681 -10.95490 -10.93943 -10.80346 -10.60568 -10.57332 -10.51341 -10.27297 -9.93681 -9.72647 -9.58798 -9.35679 -9.04123 -8.36080 -8.28762 -7.13809 -5.90250 -3.20695 1.75023 2.33084 2.69740 2.77761 3.17054 3.35387 3.41213 3.42769 4.26995 4.37409 4.47669 4.60776 4.64126 4.77640 4.93991 4.94631 4.99120 5.03305 5.10086 5.15821 5.19715 5.25337 5.32642 5.38015 5.46224 5.51914 5.54597 5.65883 5.70031 5.74064 5.77938 5.79576 5.83865 5.94306 5.99366 6.04493 6.08438 6.17416 6.20297 6.23891 6.28927 6.33290 6.38580 6.56023 6.58543 6.60260 6.70391 6.84781 6.90577 7.58121 7.60725 7.76080 8.27669 8.32075 9.40377 9.94317 10.29227 11.31760 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008831 B = 0.003608 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3170.017085 B = 7757.795245 C = 9713.363432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.367 5.367 3 N -0.303 5.303 4 C 0.055 3.945 5 C -0.239 4.239 6 C 0.091 3.909 7 C -0.041 4.041 8 C -0.095 4.095 9 H 0.099 0.901 10 C 0.533 3.467 11 O -0.551 6.551 12 N -0.609 5.609 13 C 0.073 3.927 14 C 0.181 3.819 15 H 0.065 0.935 16 N -0.711 5.711 17 C -0.249 4.249 18 H 0.071 0.929 19 C -0.006 4.006 20 N -0.929 5.929 21 Si 0.906 3.094 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 C -0.086 4.086 26 C -0.132 4.132 27 C -0.129 4.129 28 C 0.118 3.882 29 C -0.098 4.098 30 C -0.039 4.039 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.182 0.818 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.057 0.943 39 H 0.390 0.610 40 H 0.257 0.743 41 H 0.072 0.928 42 H 0.048 0.952 43 H 0.053 0.947 44 H 0.052 0.948 45 H 0.050 0.950 46 H 0.068 0.932 47 H 0.064 0.936 48 H 0.072 0.928 49 H 0.073 0.927 50 H 0.072 0.928 51 H 0.074 0.926 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.754 5.235 -15.406 16.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.149 5.149 3 N -0.124 5.124 4 C -0.130 4.130 5 C -0.250 4.250 6 C -0.038 4.038 7 C -0.080 4.080 8 C -0.117 4.117 9 H 0.117 0.883 10 C 0.321 3.679 11 O -0.430 6.430 12 N -0.341 5.341 13 C -0.053 4.053 14 C 0.068 3.932 15 H 0.083 0.917 16 N -0.353 5.353 17 C -0.380 4.380 18 H 0.089 0.911 19 C -0.203 4.203 20 N -0.576 5.576 21 Si 0.737 3.263 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.087 4.087 26 C -0.189 4.189 27 C -0.187 4.187 28 C -0.005 4.005 29 C -0.136 4.136 30 C -0.077 4.077 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.199 0.801 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.227 0.773 40 H 0.067 0.933 41 H 0.091 0.909 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.087 0.913 47 H 0.083 0.917 48 H 0.091 0.909 49 H 0.092 0.908 50 H 0.091 0.909 51 H 0.093 0.907 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.703 6.147 -15.880 17.113 hybrid contribution 0.131 -0.061 1.033 1.043 sum -1.572 6.085 -14.848 16.123 Atomic orbital electron populations 1.21874 0.74383 1.04368 1.03654 1.48158 1.06425 1.03406 1.56877 1.77501 1.01571 1.07489 1.25875 1.23549 0.95192 0.94432 0.99827 1.19915 0.94156 0.93836 1.17078 1.20723 0.91158 0.90204 1.01685 1.20137 0.97734 0.86993 1.03183 1.21245 0.96349 0.91060 1.03082 0.88306 1.20125 0.76687 0.87886 0.83235 1.90667 1.54050 1.74508 1.23741 1.48566 1.63218 1.09110 1.13243 1.23357 1.00218 1.00451 0.81290 1.21195 0.96745 0.89606 0.85610 0.91741 1.42528 1.26929 1.63401 1.02486 1.19228 1.03167 1.26226 0.89386 0.91110 1.24732 0.97356 1.00786 0.97386 1.69646 1.21233 1.48113 1.18609 0.86223 0.79042 0.79422 0.81654 1.21603 1.21711 1.20743 1.22013 0.96984 0.96307 0.93415 1.21643 0.94008 1.01008 1.02280 1.21649 0.98833 0.95444 1.02767 1.22346 1.00803 0.80430 0.96953 1.21416 0.95979 0.96306 0.99944 1.19990 0.93932 0.92089 1.01721 0.90455 0.89266 0.89560 0.80098 0.89723 0.89193 0.90704 0.92501 0.77284 0.93306 0.90891 0.93293 0.92740 0.92850 0.93080 0.91320 0.91737 0.90927 0.90796 0.90945 0.90699 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.82 11.32 59.85 0.68 1.50 16 2 N -0.37 -4.50 4.00 -63.87 -0.26 -4.76 16 3 N -0.30 -4.12 12.59 30.54 0.38 -3.74 16 4 C 0.05 0.65 12.00 -17.49 -0.21 0.44 16 5 C -0.24 -2.89 5.91 -105.05 -0.62 -3.52 16 6 C 0.09 1.12 6.73 -82.33 -0.55 0.57 16 7 C -0.04 -0.47 5.11 -27.63 -0.14 -0.61 16 8 C -0.10 -1.20 2.12 -91.53 -0.19 -1.39 16 9 H 0.10 1.29 6.88 -51.93 -0.36 0.93 16 10 C 0.53 7.94 6.81 -10.99 -0.07 7.87 16 11 O -0.55 -9.66 16.75 5.55 0.09 -9.57 16 12 N -0.61 -9.03 3.31 -170.38 -0.56 -9.60 16 13 C 0.07 1.16 5.63 -3.06 -0.02 1.14 16 14 C 0.18 3.17 2.84 -66.10 -0.19 2.99 16 15 H 0.06 1.15 8.02 -51.93 -0.42 0.73 16 16 N -0.71 -15.85 5.08 -51.65 -0.26 -16.11 16 17 C -0.25 -6.30 9.98 -15.06 -0.15 -6.45 16 18 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 19 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 20 N -0.93 -26.29 13.06 55.49 0.72 -25.56 16 21 Si 0.91 21.20 29.55 -169.99 -5.02 16.18 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 C -0.09 -1.28 0.87 -152.24 -0.13 -1.41 16 26 C -0.13 -2.04 7.95 37.16 0.30 -1.75 16 27 C -0.13 -1.75 8.68 37.15 0.32 -1.42 16 28 C 0.12 1.67 5.83 -2.41 -0.01 1.65 16 29 C -0.10 -1.14 4.72 -26.53 -0.13 -1.26 16 30 C -0.04 -0.41 6.28 -27.66 -0.17 -0.58 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 0.55 7.90 -51.93 -0.41 0.14 16 34 H 0.18 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.09 1.00 8.12 -51.93 -0.42 0.58 16 37 H 0.07 1.32 7.52 -51.92 -0.39 0.93 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.39 9.25 5.28 -40.82 -0.22 9.04 16 40 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.07 1.28 6.35 -51.93 -0.33 0.95 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.05 0.88 7.91 -51.93 -0.41 0.47 16 44 H 0.05 0.66 8.07 -51.93 -0.42 0.24 16 45 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.06 0.86 7.99 -51.93 -0.41 0.45 16 48 H 0.07 1.05 8.00 -51.93 -0.42 0.63 16 49 H 0.07 0.90 8.11 -51.93 -0.42 0.48 16 50 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 51 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 52 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 409.68 15.07 6.17 6.17 Total: -1.00 -31.32 409.68 -8.94 -40.26 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -8.82 Total: 9.20 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -1.40 Total: -2.49 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: 0.03 Total: -59.76 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -31.32 -8.94 -40.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996203253.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.358 kcal (2) G-P(sol) polarization free energy of solvation -31.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds