Wall clock time and date at job start Wed Apr 1 2020 04:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40294 * 126.09433 * 2 1 4 4 C 1.31070 * 108.26829 * 179.97438 * 3 2 1 5 5 C 1.39290 * 108.07835 * 0.37820 * 4 3 2 6 6 C 1.34324 * 126.08966 * 180.31273 * 2 1 3 7 7 C 1.50832 * 128.03570 * 359.79466 * 6 2 1 8 8 C 1.53358 * 108.38786 * 196.61419 * 7 6 2 9 9 H 1.08996 * 109.45152 * 70.09652 * 8 7 6 10 10 C 1.50699 * 109.46378 * 190.07327 * 8 7 6 11 11 O 1.21288 * 119.99941 * 85.17591 * 10 8 7 12 12 N 1.34772 * 120.00079 * 265.17159 * 10 8 7 13 13 C 1.47022 * 125.64949 * 5.09765 * 12 10 8 14 14 C 1.54324 * 107.27348 * 181.02189 * 13 12 10 15 15 H 1.08996 * 110.72072 * 263.83095 * 14 13 12 16 16 N 1.46499 * 110.71855 * 140.73011 * 14 13 12 17 17 C 1.36939 * 119.99881 * 86.45522 * 16 14 13 18 18 H 1.08000 * 119.99846 * 0.02562 * 17 16 14 19 19 C 1.38809 * 120.00010 * 179.97438 * 17 16 14 20 20 N 1.31618 * 120.00314 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00026 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47106 * 90.00463 * 21 19 17 23 23 H 1.48500 * 109.47025 * 210.00325 * 21 19 17 24 24 H 1.48498 * 109.47043 * 330.00133 * 21 19 17 25 25 C 1.55157 * 102.94315 * 22.19309 * 14 13 12 26 26 C 1.52997 * 111.00651 * 82.57046 * 25 14 13 27 27 C 1.52993 * 111.00502 * 206.38553 * 25 14 13 28 28 C 1.47426 * 125.64953 * 184.78766 * 12 10 8 29 29 C 1.53108 * 109.51578 * 310.08724 * 8 7 6 30 30 C 1.50847 * 127.89310 * 179.66071 * 5 4 3 31 31 H 1.09003 * 109.47176 * 269.68976 * 1 2 3 32 32 H 1.09000 * 109.47335 * 29.68708 * 1 2 3 33 33 H 1.09003 * 109.47084 * 149.68828 * 1 2 3 34 34 H 1.08000 * 125.95408 * 180.13734 * 4 3 2 35 35 H 1.08998 * 109.67737 * 316.35052 * 7 6 2 36 36 H 1.08998 * 109.67834 * 76.90120 * 7 6 2 37 37 H 1.09007 * 109.88079 * 300.44063 * 13 12 10 38 38 H 1.08996 * 109.88545 * 61.59794 * 13 12 10 39 39 H 0.96996 * 120.00632 * 266.45309 * 16 14 13 40 40 H 0.97004 * 120.00193 * 179.97438 * 20 19 17 41 41 H 1.09004 * 109.46867 * 60.00142 * 26 25 14 42 42 H 1.09001 * 109.47345 * 180.02562 * 26 25 14 43 43 H 1.09003 * 109.47229 * 300.00135 * 26 25 14 44 44 H 1.09003 * 109.47352 * 60.00013 * 27 25 14 45 45 H 1.09005 * 109.47392 * 179.97438 * 27 25 14 46 46 H 1.08998 * 109.47340 * 300.00142 * 27 25 14 47 47 H 1.09002 * 110.36600 * 274.74793 * 28 12 10 48 48 H 1.08995 * 110.36759 * 37.06974 * 28 12 10 49 49 H 1.08993 * 109.46625 * 310.26588 * 29 8 7 50 50 H 1.08994 * 109.45784 * 190.27563 * 29 8 7 51 51 H 1.08997 * 109.68608 * 316.34089 * 30 5 4 52 52 H 1.09001 * 109.68185 * 76.90692 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2915 1.1336 0.0000 4 6 3.5393 0.7324 0.0006 5 6 3.5454 -0.6605 -0.0078 6 6 2.2562 -1.0855 -0.0059 7 6 1.8437 -2.5362 -0.0096 8 6 3.0539 -3.3844 0.4002 9 1 3.2699 -3.2223 1.4562 10 6 2.7476 -4.8416 0.1681 11 8 2.9254 -5.3317 -0.9270 12 7 2.2762 -5.6001 1.1774 13 6 1.9160 -5.1152 2.5178 14 6 1.4530 -6.3376 3.3382 15 1 0.3668 -6.4261 3.3187 16 7 1.9394 -6.2506 4.7173 17 6 1.2160 -5.5653 5.6566 18 1 0.2866 -5.0894 5.3808 19 6 1.6767 -5.4833 6.9635 20 7 2.8090 -6.0638 7.2998 21 14 0.6894 -4.5492 8.2450 22 1 -0.2678 -5.4741 8.9034 23 1 1.6103 -3.9827 9.2630 24 1 -0.0590 -3.4480 7.5873 25 6 2.1141 -7.5270 2.5929 26 6 3.5679 -7.7102 3.0330 27 6 1.3153 -8.8155 2.7990 28 6 2.0301 -7.0525 1.1183 29 6 4.2698 -2.9790 -0.4374 30 6 4.7399 -1.5816 -0.0176 31 1 -0.3634 -0.0056 1.0277 32 1 -0.3634 0.8928 -0.5090 33 1 -0.3633 -0.8872 -0.5187 34 1 4.4106 1.3706 0.0028 35 1 1.0310 -2.6885 0.7007 36 1 1.5167 -2.8223 -1.0092 37 1 2.7843 -4.6577 2.9922 38 1 1.1060 -4.3896 2.4443 39 1 2.7739 -6.6784 4.9652 40 1 3.1311 -6.0062 8.2130 41 1 3.6010 -7.9074 4.1045 42 1 4.0074 -8.5501 2.4949 43 1 4.1312 -6.8033 2.8129 44 1 0.3039 -8.6814 2.4153 45 1 1.8004 -9.6330 2.2656 46 1 1.2722 -9.0501 3.8625 47 1 1.0402 -7.2532 0.7085 48 1 2.7965 -7.5430 0.5182 49 1 3.9962 -2.9664 -1.4924 50 1 5.0750 -3.6963 -0.2793 51 1 5.4816 -1.2137 -0.7265 52 1 5.1761 -1.6277 0.9803 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996203253.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:28 Heat of formation + Delta-G solvation = 29.292194 kcal Electronic energy + Delta-G solvation = -31795.275015 eV Core-core repulsion = 27795.417102 eV Total energy + Delta-G solvation = -3999.857913 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.58345 -41.39259 -39.55121 -37.09489 -35.84040 -34.74048 -34.44787 -32.64235 -31.35780 -30.77563 -29.13061 -28.28318 -27.67304 -27.45058 -25.81744 -24.87401 -23.38331 -22.69222 -21.89307 -20.35701 -20.03109 -19.47698 -19.11375 -18.12792 -17.63565 -17.11782 -16.79774 -16.43761 -16.17953 -15.82432 -15.64198 -15.16005 -15.14195 -14.91707 -14.75328 -14.46622 -14.30982 -14.22151 -13.96853 -13.72011 -13.68273 -13.52537 -13.35931 -13.21995 -12.98740 -12.89197 -12.79876 -12.77920 -12.65108 -12.52561 -12.11506 -12.07476 -11.92679 -11.77141 -11.71717 -11.49140 -11.48131 -11.28407 -10.94775 -10.76114 -10.24489 -9.61714 -9.17923 -9.01060 -7.91936 -5.20137 0.84769 1.43390 1.50277 1.51040 1.58331 1.67093 1.82475 1.99153 2.58272 3.23307 3.39968 3.51105 3.58304 3.71739 3.77383 3.83324 3.85741 3.91714 4.13519 4.19816 4.26610 4.29227 4.33385 4.38482 4.42281 4.45189 4.47580 4.50776 4.60642 4.62878 4.69114 4.79381 4.83175 4.87020 4.88114 4.93257 5.00853 5.04799 5.10458 5.13872 5.17315 5.24829 5.29369 5.32747 5.37443 5.45334 5.53686 5.57857 5.73918 6.07688 6.29891 6.52411 6.71431 7.11014 7.38618 8.12128 8.35708 9.31126 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008831 B = 0.003608 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3170.017085 B = 7757.795245 C = 9713.363432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.373 5.373 3 N -0.334 5.334 4 C 0.050 3.950 5 C -0.252 4.252 6 C 0.080 3.920 7 C -0.033 4.033 8 C -0.091 4.091 9 H 0.093 0.907 10 C 0.535 3.465 11 O -0.575 6.575 12 N -0.607 5.607 13 C 0.088 3.912 14 C 0.173 3.827 15 H 0.067 0.933 16 N -0.722 5.722 17 C -0.238 4.238 18 H 0.079 0.921 19 C -0.067 4.067 20 N -0.966 5.966 21 Si 0.963 3.037 22 H -0.289 1.289 23 H -0.301 1.301 24 H -0.270 1.270 25 C -0.078 4.078 26 C -0.126 4.126 27 C -0.125 4.125 28 C 0.120 3.880 29 C -0.094 4.094 30 C -0.033 4.033 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.207 0.793 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.057 0.943 38 H 0.069 0.931 39 H 0.381 0.619 40 H 0.250 0.750 41 H 0.047 0.953 42 H 0.071 0.929 43 H 0.041 0.959 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.046 0.954 47 H 0.081 0.919 48 H 0.075 0.925 49 H 0.068 0.932 50 H 0.070 0.930 51 H 0.093 0.907 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.719 5.474 -16.869 17.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.155 5.155 3 N -0.156 5.156 4 C -0.134 4.134 5 C -0.264 4.264 6 C -0.049 4.049 7 C -0.072 4.072 8 C -0.113 4.113 9 H 0.111 0.889 10 C 0.325 3.675 11 O -0.455 6.455 12 N -0.339 5.339 13 C -0.038 4.038 14 C 0.062 3.938 15 H 0.085 0.915 16 N -0.363 5.363 17 C -0.369 4.369 18 H 0.097 0.903 19 C -0.259 4.259 20 N -0.616 5.616 21 Si 0.793 3.207 22 H -0.217 1.217 23 H -0.228 1.228 24 H -0.195 1.195 25 C -0.079 4.079 26 C -0.183 4.183 27 C -0.183 4.183 28 C -0.002 4.002 29 C -0.132 4.132 30 C -0.071 4.071 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.124 0.876 34 H 0.224 0.776 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.216 0.784 40 H 0.059 0.941 41 H 0.066 0.934 42 H 0.090 0.910 43 H 0.060 0.940 44 H 0.086 0.914 45 H 0.091 0.909 46 H 0.065 0.935 47 H 0.099 0.901 48 H 0.093 0.907 49 H 0.087 0.913 50 H 0.088 0.912 51 H 0.111 0.889 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.711 6.396 -17.389 18.725 hybrid contribution 0.413 -0.169 1.392 1.461 sum -2.298 6.227 -15.997 17.319 Atomic orbital electron populations 1.22166 0.72638 1.05826 1.04482 1.48464 1.07572 1.02972 1.56480 1.77444 1.02458 1.08616 1.27058 1.24013 0.95580 0.94839 0.98982 1.20211 0.94678 0.94271 1.17218 1.20909 0.91575 0.90562 1.01871 1.20069 0.97249 0.86304 1.03577 1.21224 0.97413 0.89728 1.02912 0.88906 1.20445 0.75844 0.88590 0.82643 1.90659 1.55093 1.75164 1.24613 1.48557 1.63178 1.09503 1.12699 1.22980 0.99761 0.99586 0.81496 1.21391 0.96985 0.91552 0.83836 0.91464 1.42651 1.26460 1.63092 1.04090 1.19606 1.02960 1.24580 0.89794 0.90329 1.25403 0.98511 1.02647 0.99374 1.69790 1.23047 1.50431 1.18373 0.85304 0.77575 0.78503 0.79345 1.21670 1.22837 1.19498 1.21962 0.96438 0.96072 0.93460 1.21569 0.94600 1.01280 1.00895 1.21616 0.99702 0.95242 1.01697 1.22385 1.01836 0.79929 0.96085 1.21384 0.95458 0.96994 0.99402 1.19979 0.93788 0.91000 1.02300 0.89900 0.88374 0.87643 0.77649 0.88926 0.88785 0.92508 0.91309 0.78360 0.94145 0.93389 0.91049 0.93970 0.91397 0.90897 0.93525 0.90091 0.90656 0.91300 0.91174 0.88861 0.90841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.34 11.32 127.77 1.45 2.79 16 2 N -0.37 -8.68 4.00 -356.00 -1.42 -10.10 16 3 N -0.33 -8.75 12.59 -57.28 -0.72 -9.47 16 4 C 0.05 1.13 12.00 85.06 1.02 2.15 16 5 C -0.25 -5.79 5.91 -20.14 -0.12 -5.90 16 6 C 0.08 1.87 6.73 41.64 0.28 2.15 16 7 C -0.03 -0.69 5.11 30.01 0.15 -0.54 16 8 C -0.09 -2.16 2.12 -11.38 -0.02 -2.19 16 9 H 0.09 2.34 6.88 -2.39 -0.02 2.33 16 10 C 0.54 15.15 6.81 87.66 0.60 15.74 16 11 O -0.58 -19.25 16.75 -3.05 -0.05 -19.30 16 12 N -0.61 -16.98 3.31 -811.34 -2.69 -19.67 16 13 C 0.09 2.69 5.63 86.73 0.49 3.18 16 14 C 0.17 5.88 2.84 46.18 0.13 6.01 16 15 H 0.07 2.28 8.02 -2.39 -0.02 2.26 16 16 N -0.72 -32.17 5.08 -317.33 -1.61 -33.79 16 17 C -0.24 -11.94 9.98 84.03 0.84 -11.10 16 18 H 0.08 3.76 7.83 -2.91 -0.02 3.73 16 19 C -0.07 -3.57 5.50 84.86 0.47 -3.11 16 20 N -0.97 -55.87 13.06 21.65 0.28 -55.58 16 21 Si 0.96 43.76 29.55 68.60 2.03 45.79 16 22 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 23 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 24 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 25 C -0.08 -2.21 0.87 -50.71 -0.04 -2.25 16 26 C -0.13 -3.82 7.95 71.98 0.57 -3.25 16 27 C -0.12 -3.13 8.68 71.98 0.62 -2.50 16 28 C 0.12 3.13 5.83 86.93 0.51 3.64 16 29 C -0.09 -2.07 4.72 30.73 0.14 -1.92 16 30 C -0.03 -0.63 6.28 29.99 0.19 -0.44 16 31 H 0.08 1.14 8.14 -2.39 -0.02 1.13 16 32 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.11 1.14 7.90 -2.39 -0.02 1.12 16 34 H 0.21 3.24 8.06 -2.91 -0.02 3.22 16 35 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.09 1.92 8.12 -2.39 -0.02 1.90 16 37 H 0.06 1.98 7.52 -2.38 -0.02 1.96 16 38 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.38 18.44 5.28 -92.71 -0.49 17.95 16 40 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 41 H 0.05 1.71 6.35 -2.38 -0.02 1.69 16 42 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.04 1.36 7.91 -2.39 -0.02 1.34 16 44 H 0.07 1.50 8.07 -2.39 -0.02 1.48 16 45 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 46 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.08 1.89 7.99 -2.39 -0.02 1.87 16 48 H 0.08 1.98 8.00 -2.39 -0.02 1.96 16 49 H 0.07 1.59 8.11 -2.39 -0.02 1.57 16 50 H 0.07 1.56 8.10 -2.39 -0.02 1.54 16 51 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 52 H 0.07 1.40 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -66.92 409.68 3.50 -63.42 By element: Atomic # 1 Polarization: 35.86 SS G_CDS: 0.42 Total: 36.27 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: 7.27 Total: 2.44 kcal Atomic # 7 Polarization: -122.45 SS G_CDS: -6.16 Total: -128.61 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.05 Total: -19.30 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -66.92 3.50 -63.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996203253.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.709 kcal (2) G-P(sol) polarization free energy of solvation -66.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds