Wall clock time and date at job start Wed Apr 1 2020 04:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35202 * 125.99954 * 2 1 4 4 C 1.34517 * 107.63250 * 180.02562 * 3 2 1 5 5 C 1.40548 * 108.03803 * 359.96178 * 4 3 2 6 6 N 1.30129 * 108.20874 * 0.06810 * 5 4 3 7 7 C 1.50946 * 123.49921 * 180.12156 * 5 4 3 8 8 C 1.53367 * 108.20754 * 16.66193 * 7 5 4 9 9 C 1.53018 * 109.75380 * 309.33570 * 8 7 5 10 10 C 1.50884 * 128.37191 * 179.80275 * 4 3 2 11 11 H 1.09001 * 109.71927 * 77.04245 * 10 4 3 12 12 C 1.50702 * 109.71877 * 316.43768 * 10 4 3 13 13 O 1.21281 * 120.00046 * 326.28974 * 12 10 4 14 14 N 1.34775 * 119.99853 * 146.29588 * 12 10 4 15 15 C 1.47018 * 125.65136 * 354.92133 * 14 12 10 16 16 C 1.54319 * 107.40336 * 178.90187 * 15 14 12 17 17 H 1.09006 * 110.71806 * 219.52140 * 16 15 14 18 18 N 1.46506 * 110.71938 * 96.24996 * 16 15 14 19 19 C 1.36935 * 119.99933 * 86.45423 * 18 16 15 20 20 H 1.08001 * 119.99902 * 359.97438 * 19 18 16 21 21 C 1.38811 * 119.99742 * 179.97438 * 19 18 16 22 22 N 1.31621 * 119.99659 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 120.00125 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46763 * 89.99918 * 23 21 19 25 25 H 1.48500 * 109.46970 * 209.99831 * 23 21 19 26 26 H 1.48500 * 109.46803 * 330.00099 * 23 21 19 27 27 C 1.55398 * 102.83071 * 337.97744 * 16 15 14 28 28 C 1.53004 * 110.89048 * 277.26780 * 27 16 15 29 29 C 1.52998 * 111.07367 * 153.48547 * 27 16 15 30 30 C 1.47427 * 125.64720 * 174.96596 * 14 12 10 31 31 H 1.09006 * 109.46830 * 269.97443 * 1 2 3 32 32 H 1.09002 * 109.47261 * 29.96994 * 1 2 3 33 33 H 1.08994 * 109.46996 * 149.97468 * 1 2 3 34 34 H 1.07998 * 126.19469 * 0.05757 * 3 2 1 35 35 H 1.09004 * 109.71894 * 256.98259 * 7 5 4 36 36 H 1.09002 * 109.74777 * 136.36580 * 7 5 4 37 37 H 1.08999 * 109.42503 * 189.24689 * 8 7 5 38 38 H 1.09002 * 109.42237 * 69.42137 * 8 7 5 39 39 H 1.09001 * 109.43140 * 311.62982 * 9 8 7 40 40 H 1.09003 * 109.43173 * 191.78173 * 9 8 7 41 41 H 1.09001 * 109.88405 * 298.40242 * 15 14 12 42 42 H 1.09005 * 109.88250 * 59.40738 * 15 14 12 43 43 H 0.97000 * 119.99582 * 266.45396 * 18 16 15 44 44 H 0.97005 * 119.99904 * 180.02562 * 22 21 19 45 45 H 1.08998 * 109.46598 * 173.68485 * 28 27 16 46 46 H 1.08997 * 109.46852 * 293.68492 * 28 27 16 47 47 H 1.08996 * 109.47113 * 53.68728 * 28 27 16 48 48 H 1.09002 * 109.47158 * 306.20954 * 29 27 16 49 49 H 1.09003 * 109.46898 * 66.20858 * 29 27 16 50 50 H 1.09000 * 109.47590 * 186.20925 * 29 27 16 51 51 H 1.08995 * 110.36824 * 322.93249 * 30 14 12 52 52 H 1.09008 * 110.36569 * 85.25124 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2597 1.0938 0.0000 4 6 3.5363 0.6699 -0.0006 5 6 3.5283 -0.7355 0.0000 6 7 2.2898 -1.1350 -0.0007 7 6 4.7822 -1.5758 0.0022 8 6 5.9566 -0.6830 0.4214 9 6 5.9638 0.5927 -0.4235 10 6 4.7980 1.4975 -0.0049 11 1 4.9808 1.8946 0.9936 12 6 4.6580 2.6330 -0.9858 13 8 4.0161 2.4797 -2.0033 14 7 5.2461 3.8188 -0.7322 15 6 5.9602 4.1745 0.5027 16 6 6.4862 5.6154 0.3330 17 1 7.4853 5.7137 0.7577 18 7 5.5653 6.5784 0.9422 19 6 5.6736 6.8815 2.2732 20 1 6.4375 6.4104 2.8739 21 6 4.8015 7.7943 2.8502 22 7 4.9052 8.0853 4.1297 23 14 3.4806 8.6097 1.8110 24 1 2.2459 7.7854 1.8440 25 1 3.1884 9.9610 2.3530 26 1 3.9578 8.7307 0.4100 27 6 6.5216 5.7903 -1.2107 28 6 7.8026 5.1944 -1.7980 29 6 6.3759 7.2624 -1.6010 30 6 5.2790 4.9746 -1.6469 31 1 -0.3633 -0.0005 1.0277 32 1 -0.3634 0.8903 -0.5134 33 1 -0.3633 -0.8897 -0.5142 34 1 1.9294 2.1221 0.0009 35 1 4.9606 -1.9730 -0.9971 36 1 4.6737 -2.3974 0.7103 37 1 6.8925 -1.2216 0.2727 38 1 5.8542 -0.4199 1.4742 39 1 5.8594 0.3309 -1.4765 40 1 6.9050 1.1216 -0.2737 41 1 5.2788 4.1262 1.3521 42 1 6.7950 3.4910 0.6581 43 1 4.8790 7.0012 0.4027 44 1 4.2955 8.7230 4.5331 45 1 7.7532 5.2283 -2.8863 46 1 8.6618 5.7708 -1.4551 47 1 7.9052 4.1598 -1.4710 48 1 5.4803 7.6747 -1.1361 49 1 7.2502 7.8169 -1.2602 50 1 6.2933 7.3446 -2.6847 51 1 5.3883 4.6392 -2.6782 52 1 4.3744 5.5725 -1.5354 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996210067.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:32 Heat of formation + Delta-G solvation = 54.338065 kcal Electronic energy + Delta-G solvation = -32094.995911 eV Core-core repulsion = 28096.224068 eV Total energy + Delta-G solvation = -3998.771843 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.58006 -40.03695 -38.15504 -36.44891 -34.07010 -33.34501 -32.69837 -31.82597 -31.12833 -28.83124 -28.29134 -27.34279 -26.91412 -26.28227 -23.92238 -23.32753 -21.99535 -21.51653 -20.96370 -19.17833 -19.02284 -18.52200 -17.64646 -16.85915 -16.57010 -15.80478 -15.50519 -15.13015 -14.87296 -14.76890 -14.53433 -14.41227 -13.96470 -13.77624 -13.47626 -13.19164 -13.00042 -12.86393 -12.79615 -12.68808 -12.56750 -12.42795 -12.21799 -12.14250 -11.86623 -11.76134 -11.67063 -11.32980 -11.29859 -11.13470 -11.01755 -10.90931 -10.64323 -10.55562 -10.37064 -10.32015 -9.97752 -9.64434 -9.49094 -9.21603 -9.05631 -8.29472 -8.27611 -7.40314 -5.87330 -3.24107 1.92313 2.45575 2.71871 2.85887 3.28663 3.32178 3.34718 3.38765 4.22844 4.49391 4.55644 4.67762 4.77666 4.78823 4.88539 4.95090 5.01972 5.04764 5.08335 5.16281 5.24951 5.25385 5.29361 5.41115 5.44857 5.48600 5.55422 5.56782 5.63702 5.71804 5.77125 5.81223 5.81646 5.87428 5.96268 6.01292 6.05655 6.09058 6.13590 6.15747 6.19513 6.21995 6.26653 6.44304 6.56433 6.64165 6.66847 6.69583 7.01133 7.72306 7.84218 7.87962 8.31571 8.44150 9.08754 9.81280 9.99898 11.30457 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010718 B = 0.003568 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.911922 B = 7844.784924 C = 8939.175863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.385 5.385 3 C 0.082 3.918 4 C -0.217 4.217 5 C 0.085 3.915 6 N -0.296 5.296 7 C -0.037 4.037 8 C -0.113 4.113 9 C -0.103 4.103 10 C -0.022 4.022 11 H 0.097 0.903 12 C 0.533 3.467 13 O -0.547 6.547 14 N -0.607 5.607 15 C 0.071 3.929 16 C 0.185 3.815 17 H 0.079 0.921 18 N -0.737 5.737 19 C -0.249 4.249 20 H 0.093 0.907 21 C 0.011 3.989 22 N -0.929 5.929 23 Si 0.878 3.122 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.276 1.276 27 C -0.092 4.092 28 C -0.129 4.129 29 C -0.130 4.130 30 C 0.120 3.880 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.169 0.831 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.059 0.941 43 H 0.363 0.637 44 H 0.260 0.740 45 H 0.053 0.947 46 H 0.059 0.941 47 H 0.055 0.945 48 H 0.063 0.937 49 H 0.063 0.937 50 H 0.048 0.952 51 H 0.070 0.930 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.864 -15.101 -10.418 18.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.167 5.167 3 C -0.063 4.063 4 C -0.228 4.228 5 C -0.083 4.083 6 N -0.117 5.117 7 C -0.076 4.076 8 C -0.151 4.151 9 C -0.141 4.141 10 C -0.045 4.045 11 H 0.115 0.885 12 C 0.321 3.679 13 O -0.425 6.425 14 N -0.340 5.340 15 C -0.054 4.054 16 C 0.074 3.926 17 H 0.097 0.903 18 N -0.380 5.380 19 C -0.379 4.379 20 H 0.111 0.889 21 C -0.185 4.185 22 N -0.576 5.576 23 Si 0.709 3.291 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.202 1.202 27 C -0.093 4.093 28 C -0.186 4.186 29 C -0.188 4.188 30 C -0.003 4.003 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.186 0.814 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.078 0.922 43 H 0.198 0.802 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.079 0.921 47 H 0.074 0.926 48 H 0.082 0.918 49 H 0.082 0.918 50 H 0.067 0.933 51 H 0.089 0.911 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.442 -16.195 -10.696 19.413 hybrid contribution -0.852 1.582 -0.490 1.862 sum -1.294 -14.613 -11.186 18.448 Atomic orbital electron populations 1.21796 0.74328 1.04282 1.03143 1.48383 1.06303 1.03361 1.58669 1.21929 0.90767 0.93203 1.00359 1.19379 0.93290 0.93242 1.16924 1.22244 0.93339 0.93421 0.99295 1.76950 1.01110 1.08167 1.25469 1.20119 0.88491 0.96345 1.02660 1.21546 0.97576 0.95463 1.00477 1.21452 0.96554 0.95357 1.00714 1.19652 0.93195 0.92556 0.99060 0.88533 1.20191 0.78415 0.82157 0.87103 1.90659 1.40859 1.82457 1.28550 1.48485 1.54526 1.12282 1.18724 1.23218 0.96198 0.99378 0.86638 1.21214 0.94442 0.87033 0.89924 0.90332 1.42821 1.37274 1.49310 1.08580 1.19045 1.14459 1.20597 0.83755 0.88929 1.24636 0.98977 0.99352 0.95548 1.69691 1.40036 1.37686 1.10201 0.86668 0.82958 0.79458 0.80039 1.21145 1.21616 1.20210 1.22087 0.94580 0.95704 0.96956 1.21667 0.96183 1.00670 1.00101 1.21640 1.03182 0.94033 0.99902 1.22229 0.97708 0.86655 0.93698 0.90939 0.89603 0.89521 0.81393 0.89926 0.90012 0.90572 0.91042 0.91100 0.90877 0.90197 0.92229 0.80196 0.92946 0.92825 0.92148 0.92580 0.91850 0.91811 0.93276 0.91134 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.95 11.47 59.85 0.69 1.64 16 2 N -0.38 -5.26 4.02 -68.31 -0.27 -5.54 16 3 C 0.08 1.20 10.66 -17.38 -0.19 1.01 16 4 C -0.22 -3.17 5.05 -104.98 -0.53 -3.70 16 5 C 0.09 1.19 7.10 -82.32 -0.58 0.60 16 6 N -0.30 -4.43 12.56 33.76 0.42 -4.00 16 7 C -0.04 -0.38 6.31 -27.57 -0.17 -0.55 16 8 C -0.11 -1.01 5.86 -26.53 -0.16 -1.16 16 9 C -0.10 -1.12 5.17 -26.52 -0.14 -1.26 16 10 C -0.02 -0.30 2.58 -92.63 -0.24 -0.54 16 11 H 0.10 1.27 7.03 -51.93 -0.36 0.91 16 12 C 0.53 8.52 6.60 -10.99 -0.07 8.45 16 13 O -0.55 -10.42 16.40 5.56 0.09 -10.33 16 14 N -0.61 -9.38 3.31 -170.52 -0.56 -9.95 16 15 C 0.07 1.10 5.31 -3.07 -0.02 1.08 16 16 C 0.19 3.11 2.88 -65.96 -0.19 2.92 16 17 H 0.08 1.32 8.03 -51.93 -0.42 0.91 16 18 N -0.74 -15.66 4.40 -51.52 -0.23 -15.88 16 19 C -0.25 -6.43 10.46 -15.06 -0.16 -6.59 16 20 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 21 C 0.01 0.31 5.50 -17.43 -0.10 0.22 16 22 N -0.93 -27.85 13.97 55.49 0.78 -27.07 16 23 Si 0.88 21.15 27.73 -169.99 -4.71 16.44 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 26 H -0.28 -6.18 6.52 56.52 0.37 -5.81 16 27 C -0.09 -1.30 0.83 -152.23 -0.13 -1.42 16 28 C -0.13 -1.50 8.60 37.16 0.32 -1.18 16 29 C -0.13 -1.85 8.35 37.16 0.31 -1.54 16 30 C 0.12 1.82 5.80 -2.53 -0.01 1.81 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.17 2.31 8.06 -52.49 -0.42 1.89 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 39 H 0.07 0.84 8.08 -51.93 -0.42 0.43 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 1.41 7.90 -51.93 -0.41 1.00 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.36 7.81 3.88 -40.82 -0.16 7.65 16 44 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 45 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.06 0.64 7.81 -51.93 -0.41 0.24 16 48 H 0.06 1.05 6.18 -51.93 -0.32 0.72 16 49 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 50 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 51 H 0.07 1.05 8.00 -51.93 -0.42 0.63 16 52 H 0.06 1.03 8.04 -51.92 -0.42 0.61 16 LS Contribution 406.86 15.07 6.13 6.13 Total: -1.00 -33.41 406.86 -8.56 -41.97 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -8.84 Total: 8.45 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -1.36 Total: -0.21 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: 0.13 Total: -62.44 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.09 Total: -10.33 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.71 Total: 16.44 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.41 -8.56 -41.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996210067.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.305 kcal (2) G-P(sol) polarization free energy of solvation -33.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds