Wall clock time and date at job start Wed Apr 1 2020 04:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35202 * 125.99954 * 2 1 4 4 C 1.34517 * 107.63250 * 180.02562 * 3 2 1 5 5 C 1.40548 * 108.03803 * 359.96178 * 4 3 2 6 6 N 1.30129 * 108.20874 * 0.06810 * 5 4 3 7 7 C 1.50946 * 123.49921 * 180.12156 * 5 4 3 8 8 C 1.53367 * 108.20754 * 16.66193 * 7 5 4 9 9 C 1.53018 * 109.75380 * 309.33570 * 8 7 5 10 10 C 1.50884 * 128.37191 * 179.80275 * 4 3 2 11 11 H 1.09001 * 109.71927 * 77.04245 * 10 4 3 12 12 C 1.50702 * 109.71877 * 316.43768 * 10 4 3 13 13 O 1.21281 * 120.00046 * 326.28974 * 12 10 4 14 14 N 1.34775 * 119.99853 * 146.29588 * 12 10 4 15 15 C 1.47018 * 125.65136 * 354.92133 * 14 12 10 16 16 C 1.54319 * 107.40336 * 178.90187 * 15 14 12 17 17 H 1.09006 * 110.71806 * 219.52140 * 16 15 14 18 18 N 1.46506 * 110.71938 * 96.24996 * 16 15 14 19 19 C 1.36935 * 119.99933 * 86.45423 * 18 16 15 20 20 H 1.08001 * 119.99902 * 359.97438 * 19 18 16 21 21 C 1.38811 * 119.99742 * 179.97438 * 19 18 16 22 22 N 1.31621 * 119.99659 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 120.00125 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46763 * 89.99918 * 23 21 19 25 25 H 1.48500 * 109.46970 * 209.99831 * 23 21 19 26 26 H 1.48500 * 109.46803 * 330.00099 * 23 21 19 27 27 C 1.55398 * 102.83071 * 337.97744 * 16 15 14 28 28 C 1.53004 * 110.89048 * 277.26780 * 27 16 15 29 29 C 1.52998 * 111.07367 * 153.48547 * 27 16 15 30 30 C 1.47427 * 125.64720 * 174.96596 * 14 12 10 31 31 H 1.09006 * 109.46830 * 269.97443 * 1 2 3 32 32 H 1.09002 * 109.47261 * 29.96994 * 1 2 3 33 33 H 1.08994 * 109.46996 * 149.97468 * 1 2 3 34 34 H 1.07998 * 126.19469 * 0.05757 * 3 2 1 35 35 H 1.09004 * 109.71894 * 256.98259 * 7 5 4 36 36 H 1.09002 * 109.74777 * 136.36580 * 7 5 4 37 37 H 1.08999 * 109.42503 * 189.24689 * 8 7 5 38 38 H 1.09002 * 109.42237 * 69.42137 * 8 7 5 39 39 H 1.09001 * 109.43140 * 311.62982 * 9 8 7 40 40 H 1.09003 * 109.43173 * 191.78173 * 9 8 7 41 41 H 1.09001 * 109.88405 * 298.40242 * 15 14 12 42 42 H 1.09005 * 109.88250 * 59.40738 * 15 14 12 43 43 H 0.97000 * 119.99582 * 266.45396 * 18 16 15 44 44 H 0.97005 * 119.99904 * 180.02562 * 22 21 19 45 45 H 1.08998 * 109.46598 * 173.68485 * 28 27 16 46 46 H 1.08997 * 109.46852 * 293.68492 * 28 27 16 47 47 H 1.08996 * 109.47113 * 53.68728 * 28 27 16 48 48 H 1.09002 * 109.47158 * 306.20954 * 29 27 16 49 49 H 1.09003 * 109.46898 * 66.20858 * 29 27 16 50 50 H 1.09000 * 109.47590 * 186.20925 * 29 27 16 51 51 H 1.08995 * 110.36824 * 322.93249 * 30 14 12 52 52 H 1.09008 * 110.36569 * 85.25124 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2597 1.0938 0.0000 4 6 3.5363 0.6699 -0.0006 5 6 3.5283 -0.7355 0.0000 6 7 2.2898 -1.1350 -0.0007 7 6 4.7822 -1.5758 0.0022 8 6 5.9566 -0.6830 0.4214 9 6 5.9638 0.5927 -0.4235 10 6 4.7980 1.4975 -0.0049 11 1 4.9808 1.8946 0.9936 12 6 4.6580 2.6330 -0.9858 13 8 4.0161 2.4797 -2.0033 14 7 5.2461 3.8188 -0.7322 15 6 5.9602 4.1745 0.5027 16 6 6.4862 5.6154 0.3330 17 1 7.4853 5.7137 0.7577 18 7 5.5653 6.5784 0.9422 19 6 5.6736 6.8815 2.2732 20 1 6.4375 6.4104 2.8739 21 6 4.8015 7.7943 2.8502 22 7 4.9052 8.0853 4.1297 23 14 3.4806 8.6097 1.8110 24 1 2.2459 7.7854 1.8440 25 1 3.1884 9.9610 2.3530 26 1 3.9578 8.7307 0.4100 27 6 6.5216 5.7903 -1.2107 28 6 7.8026 5.1944 -1.7980 29 6 6.3759 7.2624 -1.6010 30 6 5.2790 4.9746 -1.6469 31 1 -0.3633 -0.0005 1.0277 32 1 -0.3634 0.8903 -0.5134 33 1 -0.3633 -0.8897 -0.5142 34 1 1.9294 2.1221 0.0009 35 1 4.9606 -1.9730 -0.9971 36 1 4.6737 -2.3974 0.7103 37 1 6.8925 -1.2216 0.2727 38 1 5.8542 -0.4199 1.4742 39 1 5.8594 0.3309 -1.4765 40 1 6.9050 1.1216 -0.2737 41 1 5.2788 4.1262 1.3521 42 1 6.7950 3.4910 0.6581 43 1 4.8790 7.0012 0.4027 44 1 4.2955 8.7230 4.5331 45 1 7.7532 5.2283 -2.8863 46 1 8.6618 5.7708 -1.4551 47 1 7.9052 4.1598 -1.4710 48 1 5.4803 7.6747 -1.1361 49 1 7.2502 7.8169 -1.2602 50 1 6.2933 7.3446 -2.6847 51 1 5.3883 4.6392 -2.6782 52 1 4.3744 5.5725 -1.5354 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996210067.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:31 Heat of formation + Delta-G solvation = 33.793379 kcal Electronic energy + Delta-G solvation = -32095.886795 eV Core-core repulsion = 28096.224068 eV Total energy + Delta-G solvation = -3999.662727 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.61256 -41.29017 -39.42036 -37.39880 -35.80770 -34.63126 -33.66724 -33.02294 -32.73684 -29.86209 -29.70051 -28.21843 -28.06448 -27.38671 -25.50228 -24.46371 -22.96090 -22.84848 -22.07779 -20.58972 -20.10510 -19.65879 -19.34062 -18.06598 -17.60340 -17.19697 -16.55692 -16.34301 -16.22804 -16.06972 -15.66097 -15.58046 -15.17548 -14.97110 -14.67048 -14.42852 -14.38503 -13.92076 -13.79594 -13.71551 -13.63384 -13.56090 -13.44492 -13.32020 -13.15364 -12.90818 -12.81282 -12.73723 -12.68406 -12.23332 -12.16441 -12.03403 -11.93990 -11.82121 -11.70763 -11.55694 -11.37445 -11.28840 -10.98827 -10.69029 -10.24043 -9.61066 -9.34663 -9.26690 -8.00008 -5.32029 0.86015 1.35772 1.37284 1.44343 1.52171 1.63667 1.66363 2.14004 2.48057 3.29188 3.30770 3.40217 3.56011 3.73438 3.81341 3.83407 3.89841 3.99942 4.06840 4.13155 4.28240 4.29483 4.34258 4.34860 4.46582 4.49244 4.58107 4.61058 4.63459 4.67129 4.68269 4.77631 4.88857 4.90110 4.92559 4.96457 5.03450 5.08666 5.10732 5.13609 5.18309 5.25849 5.29491 5.33970 5.41297 5.44383 5.54074 5.69115 5.82758 6.03146 6.24500 6.58333 6.68669 7.09933 7.18577 7.86414 8.03363 9.21135 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010718 B = 0.003568 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.911922 B = 7844.784924 C = 8939.175863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.389 5.389 3 C 0.064 3.936 4 C -0.235 4.235 5 C 0.078 3.922 6 N -0.321 5.321 7 C -0.038 4.038 8 C -0.105 4.105 9 C -0.099 4.099 10 C -0.019 4.019 11 H 0.098 0.902 12 C 0.534 3.466 13 O -0.581 6.581 14 N -0.606 5.606 15 C 0.081 3.919 16 C 0.174 3.826 17 H 0.083 0.917 18 N -0.740 5.740 19 C -0.218 4.218 20 H 0.070 0.930 21 C -0.055 4.055 22 N -0.980 5.980 23 Si 0.934 3.066 24 H -0.289 1.289 25 H -0.299 1.299 26 H -0.250 1.250 27 C -0.078 4.078 28 C -0.123 4.123 29 C -0.129 4.129 30 C 0.117 3.883 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.168 0.832 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.090 0.910 41 H 0.055 0.945 42 H 0.092 0.908 43 H 0.364 0.636 44 H 0.255 0.745 45 H 0.068 0.932 46 H 0.070 0.930 47 H 0.060 0.940 48 H 0.038 0.962 49 H 0.065 0.935 50 H 0.073 0.927 51 H 0.077 0.923 52 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.217 -16.390 -12.237 20.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.171 5.171 3 C -0.082 4.082 4 C -0.247 4.247 5 C -0.090 4.090 6 N -0.142 5.142 7 C -0.077 4.077 8 C -0.143 4.143 9 C -0.137 4.137 10 C -0.042 4.042 11 H 0.116 0.884 12 C 0.324 3.676 13 O -0.461 6.461 14 N -0.338 5.338 15 C -0.044 4.044 16 C 0.065 3.935 17 H 0.101 0.899 18 N -0.383 5.383 19 C -0.349 4.349 20 H 0.088 0.912 21 C -0.247 4.247 22 N -0.631 5.631 23 Si 0.764 3.236 24 H -0.216 1.216 25 H -0.226 1.226 26 H -0.175 1.175 27 C -0.079 4.079 28 C -0.181 4.181 29 C -0.187 4.187 30 C -0.006 4.006 31 H 0.104 0.896 32 H 0.119 0.881 33 H 0.115 0.885 34 H 0.185 0.815 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.125 0.875 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.109 0.891 41 H 0.073 0.927 42 H 0.110 0.890 43 H 0.198 0.802 44 H 0.064 0.936 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.079 0.921 48 H 0.057 0.943 49 H 0.084 0.916 50 H 0.091 0.909 51 H 0.096 0.904 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.931 -17.517 -12.568 21.579 hybrid contribution -1.265 1.917 0.041 2.297 sum -0.334 -15.600 -12.527 20.010 Atomic orbital electron populations 1.22118 0.72218 1.05557 1.04453 1.48745 1.07627 1.02743 1.58013 1.22106 0.91509 0.93580 1.00982 1.19672 0.93661 0.94005 1.17352 1.22850 0.94165 0.93626 0.98368 1.76890 1.01858 1.09072 1.26426 1.20314 0.87253 0.96506 1.03647 1.21549 0.98376 0.94481 0.99895 1.21490 0.95918 0.95909 1.00380 1.19710 0.94088 0.92074 0.98285 0.88406 1.20624 0.77489 0.82566 0.86965 1.90639 1.42283 1.83038 1.30150 1.48520 1.54344 1.12289 1.18611 1.23012 0.96547 0.99088 0.85733 1.21487 0.93559 0.86603 0.91871 0.89871 1.42834 1.38203 1.50328 1.06958 1.19047 1.12254 1.18276 0.85362 0.91200 1.25277 1.01752 1.01139 0.96501 1.69846 1.41673 1.39403 1.12186 0.85730 0.80249 0.77773 0.79893 1.21625 1.22557 1.17511 1.22042 0.95514 0.95865 0.94499 1.21645 0.94686 1.00834 1.00912 1.21635 1.01970 0.93749 1.01354 1.22271 0.97593 0.86561 0.94132 0.89587 0.88108 0.88513 0.81484 0.89043 0.88648 0.87500 0.91057 0.92138 0.89110 0.92676 0.88966 0.80187 0.93576 0.91334 0.91108 0.92074 0.94321 0.91645 0.90853 0.90427 0.93639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.68 11.47 127.77 1.47 3.14 16 2 N -0.39 -10.58 4.02 -370.02 -1.49 -12.07 16 3 C 0.06 1.88 10.66 83.32 0.89 2.77 16 4 C -0.24 -6.80 5.05 -20.09 -0.10 -6.90 16 5 C 0.08 2.10 7.10 43.45 0.31 2.41 16 6 N -0.32 -9.46 12.56 -47.10 -0.59 -10.05 16 7 C -0.04 -0.70 6.31 30.05 0.19 -0.51 16 8 C -0.11 -1.57 5.86 30.72 0.18 -1.39 16 9 C -0.10 -1.91 5.17 30.73 0.16 -1.75 16 10 C -0.02 -0.50 2.58 -12.10 -0.03 -0.53 16 11 H 0.10 2.48 7.03 -2.39 -0.02 2.46 16 12 C 0.53 16.57 6.60 87.66 0.58 17.15 16 13 O -0.58 -21.91 16.40 -3.03 -0.05 -21.96 16 14 N -0.61 -17.84 3.31 -811.80 -2.69 -20.53 16 15 C 0.08 2.37 5.31 86.73 0.46 2.83 16 16 C 0.17 5.55 2.88 46.26 0.13 5.69 16 17 H 0.08 2.62 8.03 -2.38 -0.02 2.61 16 18 N -0.74 -30.89 4.40 -316.92 -1.40 -32.28 16 19 C -0.22 -11.35 10.46 84.03 0.88 -10.47 16 20 H 0.07 3.91 8.06 -2.91 -0.02 3.89 16 21 C -0.05 -3.08 5.50 84.86 0.47 -2.61 16 22 N -0.98 -60.43 13.97 21.65 0.30 -60.13 16 23 Si 0.93 44.16 27.73 68.60 1.90 46.06 16 24 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 25 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 26 H -0.25 -10.62 6.52 99.48 0.65 -9.97 16 27 C -0.08 -2.00 0.83 -50.70 -0.04 -2.05 16 28 C -0.12 -2.41 8.60 71.98 0.62 -1.79 16 29 C -0.13 -3.37 8.35 71.98 0.60 -2.77 16 30 C 0.12 3.37 5.80 86.85 0.50 3.87 16 31 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.17 4.76 8.06 -2.91 -0.02 4.73 16 35 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 36 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.07 1.10 8.10 -2.39 -0.02 1.08 16 39 H 0.06 1.31 8.08 -2.39 -0.02 1.30 16 40 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.05 1.91 7.90 -2.39 -0.02 1.89 16 42 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 43 H 0.36 15.25 3.88 -92.71 -0.36 14.89 16 44 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 45 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.06 1.15 7.81 -2.39 -0.02 1.13 16 48 H 0.04 1.20 6.18 -2.39 -0.01 1.18 16 49 H 0.06 1.68 8.14 -2.39 -0.02 1.67 16 50 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 51 H 0.08 2.14 8.00 -2.39 -0.02 2.12 16 52 H 0.05 1.46 8.04 -2.38 -0.02 1.44 16 Total: -1.00 -74.10 406.86 3.73 -70.36 By element: Atomic # 1 Polarization: 33.02 SS G_CDS: 0.49 Total: 33.50 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: 7.26 Total: 7.09 kcal Atomic # 7 Polarization: -129.19 SS G_CDS: -5.86 Total: -135.05 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.05 Total: -21.96 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.90 Total: 46.06 kcal Total: -74.10 3.73 -70.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996210067.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.154 kcal (2) G-P(sol) polarization free energy of solvation -74.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds