Wall clock time and date at job start Wed Apr 1 2020 04:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35194 * 126.00072 * 2 1 4 4 C 1.34568 * 107.61987 * 180.02562 * 3 2 1 5 5 C 1.40491 * 108.03740 * 359.90409 * 4 3 2 6 6 N 1.30129 * 108.22679 * 0.12694 * 5 4 3 7 7 C 1.50938 * 123.48996 * 180.31092 * 5 4 3 8 8 C 1.53380 * 108.20301 * 16.61327 * 7 5 4 9 9 C 1.53049 * 109.73276 * 309.33469 * 8 7 5 10 10 C 1.50891 * 128.32885 * 179.85858 * 4 3 2 11 11 H 1.08998 * 109.71242 * 76.85322 * 10 4 3 12 12 C 1.50695 * 109.71674 * 316.24668 * 10 4 3 13 13 O 1.21279 * 120.00108 * 333.08555 * 12 10 4 14 14 N 1.34775 * 119.99970 * 153.09378 * 12 10 4 15 15 C 1.48421 * 127.82339 * 354.63111 * 14 12 10 16 16 C 1.54386 * 104.48405 * 219.57094 * 15 14 12 17 17 H 1.09005 * 110.33893 * 95.03155 * 16 15 14 18 18 N 1.46499 * 110.34146 * 217.18145 * 16 15 14 19 19 C 1.36939 * 120.00077 * 272.12612 * 18 16 15 20 20 H 1.07999 * 119.99900 * 359.97438 * 19 18 16 21 21 C 1.38817 * 119.99953 * 180.02562 * 19 18 16 22 22 N 1.31613 * 119.99831 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99974 * 359.97438 * 21 19 18 24 24 H 1.48495 * 109.46935 * 90.00191 * 23 21 19 25 25 H 1.48497 * 109.46586 * 210.00162 * 23 21 19 26 26 H 1.48496 * 109.46926 * 329.99796 * 23 21 19 27 27 C 1.54283 * 105.05289 * 336.10701 * 16 15 14 28 28 C 1.53001 * 110.34213 * 118.92563 * 27 16 15 29 29 C 1.52999 * 110.34057 * 241.07511 * 27 16 15 30 30 C 1.48150 * 127.83731 * 174.59242 * 14 12 10 31 31 H 1.09001 * 109.47314 * 270.00159 * 1 2 3 32 32 H 1.08996 * 109.47173 * 30.01104 * 1 2 3 33 33 H 1.09008 * 109.46676 * 150.00199 * 1 2 3 34 34 H 1.08006 * 126.19513 * 0.02562 * 3 2 1 35 35 H 1.09003 * 109.71979 * 136.28652 * 7 5 4 36 36 H 1.08999 * 109.72041 * 256.89016 * 7 5 4 37 37 H 1.08996 * 109.42204 * 69.42889 * 8 7 5 38 38 H 1.08997 * 109.42353 * 189.32121 * 8 7 5 39 39 H 1.08997 * 109.44658 * 311.66301 * 9 8 7 40 40 H 1.09002 * 109.42305 * 191.81472 * 9 8 7 41 41 H 1.08998 * 110.45031 * 100.84084 * 15 14 12 42 42 H 1.08998 * 110.49335 * 338.32359 * 15 14 12 43 43 H 0.97002 * 120.00129 * 92.12584 * 18 16 15 44 44 H 0.97000 * 119.99969 * 179.97438 * 22 21 19 45 45 H 1.09002 * 109.47171 * 59.99637 * 28 27 16 46 46 H 1.09000 * 109.47123 * 179.97438 * 28 27 16 47 47 H 1.08997 * 109.47149 * 299.99768 * 28 27 16 48 48 H 1.08997 * 109.47340 * 60.00269 * 29 27 16 49 49 H 1.09000 * 109.47023 * 180.02562 * 29 27 16 50 50 H 1.09004 * 109.47647 * 300.00117 * 29 27 16 51 51 H 1.08997 * 110.40573 * 21.63393 * 30 14 12 52 52 H 1.08999 * 110.50130 * 259.25338 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2597 1.0937 0.0000 4 6 3.5367 0.6694 -0.0006 5 6 3.5283 -0.7355 0.0013 6 7 2.2899 -1.1351 0.0002 7 6 4.7821 -1.5759 0.0081 8 6 5.9555 -0.6823 0.4288 9 6 5.9644 0.5921 -0.4187 10 6 4.7980 1.4976 -0.0037 11 1 4.9784 1.8966 0.9944 12 6 4.6594 2.6312 -0.9870 13 8 3.9213 2.5182 -1.9426 14 7 5.3559 3.7705 -0.8045 15 6 6.2157 4.1368 0.3485 16 6 5.9237 5.6338 0.5877 17 1 5.1581 5.7527 1.3545 18 7 7.1487 6.3354 0.9792 19 6 7.5100 6.3980 2.2986 20 1 6.8916 5.9306 3.0506 21 6 8.6705 7.0633 2.6696 22 7 9.0174 7.1239 3.9378 23 14 9.7397 7.8725 1.3691 24 1 9.2964 9.2752 1.1665 25 1 11.1560 7.8604 1.8151 26 1 9.6165 7.1250 0.0919 27 6 5.4120 6.1638 -0.7679 28 6 3.9846 6.6962 -0.6263 29 6 6.3385 7.2620 -1.2936 30 6 5.4375 4.9406 -1.7094 31 1 -0.3634 0.0000 1.0277 32 1 -0.3633 0.8898 -0.5140 33 1 -0.3633 -0.8901 -0.5139 34 1 1.9294 2.1221 0.0004 35 1 4.6714 -2.3958 0.7178 36 1 4.9625 -1.9753 -0.9898 37 1 5.8505 -0.4176 1.4809 38 1 6.8919 -1.2207 0.2821 39 1 5.8621 0.3285 -1.4714 40 1 6.9055 1.1211 -0.2681 41 1 7.2671 3.9894 0.1016 42 1 5.9452 3.5517 1.2274 43 1 7.7039 6.7556 0.3039 44 1 9.8285 7.5885 4.1970 45 1 3.9701 7.5079 0.1012 46 1 3.6377 7.0670 -1.5908 47 1 3.3293 5.8935 -0.2881 48 1 7.3422 6.8581 -1.4259 49 1 5.9640 7.6261 -2.2503 50 1 6.3692 8.0845 -0.5790 51 1 4.5805 4.9610 -2.3825 52 1 6.3667 4.9187 -2.2789 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996210071.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:35 Heat of formation + Delta-G solvation = 42.076618 kcal Electronic energy + Delta-G solvation = -31890.668898 eV Core-core repulsion = 27891.365359 eV Total energy + Delta-G solvation = -3999.303539 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.58217 -41.22429 -39.44922 -37.41124 -35.90504 -34.63910 -33.65728 -33.04242 -32.71429 -29.88383 -29.43477 -28.28417 -28.17598 -27.29600 -25.49144 -24.50569 -23.07772 -22.84708 -22.05736 -20.48335 -20.07114 -19.67897 -19.30745 -18.10993 -17.58704 -17.02734 -16.62591 -16.30753 -16.22388 -15.82806 -15.65359 -15.53798 -15.33681 -15.07680 -14.75701 -14.49190 -14.38890 -13.97569 -13.88409 -13.72475 -13.57718 -13.45522 -13.35393 -13.29395 -13.07010 -12.92991 -12.76193 -12.69877 -12.48641 -12.23198 -12.14222 -12.03265 -11.93114 -11.85653 -11.72609 -11.57188 -11.35453 -11.30036 -10.97121 -10.69035 -10.20408 -9.74328 -9.30332 -9.23231 -7.96952 -5.30594 0.90851 1.41248 1.43999 1.50948 1.56040 1.62192 1.69148 2.08069 2.52472 3.29185 3.34023 3.42587 3.63111 3.75893 3.82362 3.85011 3.91534 3.98763 4.06409 4.15024 4.26656 4.31886 4.34490 4.37167 4.40087 4.48963 4.53700 4.63023 4.64124 4.67613 4.69741 4.77526 4.84428 4.87078 4.90691 4.97185 5.00998 5.01717 5.06908 5.13560 5.15248 5.18552 5.25013 5.33033 5.37997 5.40475 5.50664 5.69932 5.84594 6.09096 6.26884 6.59176 6.72028 7.12594 7.18347 7.87908 8.07038 9.24229 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014006 B = 0.003030 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.658331 B = 9239.391183 C =10052.192122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.389 5.389 3 C 0.074 3.926 4 C -0.238 4.238 5 C 0.076 3.924 6 N -0.323 5.323 7 C -0.038 4.038 8 C -0.106 4.106 9 C -0.102 4.102 10 C -0.019 4.019 11 H 0.100 0.900 12 C 0.542 3.458 13 O -0.575 6.575 14 N -0.615 5.615 15 C 0.088 3.912 16 C 0.174 3.826 17 H 0.058 0.942 18 N -0.740 5.740 19 C -0.226 4.226 20 H 0.061 0.939 21 C -0.058 4.058 22 N -0.982 5.982 23 Si 0.941 3.059 24 H -0.279 1.279 25 H -0.301 1.301 26 H -0.248 1.248 27 C -0.082 4.082 28 C -0.126 4.126 29 C -0.137 4.137 30 C 0.117 3.883 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.178 0.822 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.101 0.899 39 H 0.060 0.940 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.372 0.628 44 H 0.256 0.744 45 H 0.054 0.946 46 H 0.072 0.928 47 H 0.049 0.951 48 H 0.052 0.948 49 H 0.080 0.920 50 H 0.054 0.946 51 H 0.081 0.919 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.186 -12.400 -11.794 21.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.171 5.171 3 C -0.071 4.071 4 C -0.250 4.250 5 C -0.092 4.092 6 N -0.145 5.145 7 C -0.077 4.077 8 C -0.144 4.144 9 C -0.140 4.140 10 C -0.041 4.041 11 H 0.118 0.882 12 C 0.332 3.668 13 O -0.455 6.455 14 N -0.348 5.348 15 C -0.038 4.038 16 C 0.063 3.937 17 H 0.076 0.924 18 N -0.385 5.385 19 C -0.357 4.357 20 H 0.079 0.921 21 C -0.250 4.250 22 N -0.633 5.633 23 Si 0.769 3.231 24 H -0.206 1.206 25 H -0.228 1.228 26 H -0.172 1.172 27 C -0.084 4.084 28 C -0.183 4.183 29 C -0.194 4.194 30 C -0.005 4.005 31 H 0.105 0.895 32 H 0.123 0.877 33 H 0.111 0.889 34 H 0.195 0.805 35 H 0.113 0.887 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.119 0.881 39 H 0.079 0.921 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.209 0.791 44 H 0.065 0.935 45 H 0.073 0.927 46 H 0.091 0.909 47 H 0.068 0.932 48 H 0.071 0.929 49 H 0.098 0.902 50 H 0.073 0.927 51 H 0.099 0.901 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.639 -13.572 -12.096 22.727 hybrid contribution 1.220 1.576 -0.105 1.996 sum -12.418 -11.995 -12.201 21.142 Atomic orbital electron populations 1.22133 0.72091 1.05608 1.04507 1.48769 1.07674 1.02780 1.57854 1.22157 0.91021 0.93751 1.00180 1.19616 0.93754 0.93741 1.17904 1.22754 0.94054 0.93810 0.98570 1.76906 1.01784 1.09268 1.26570 1.20272 0.87400 0.96480 1.03520 1.21542 0.98415 0.94533 0.99874 1.21489 0.96044 0.96109 1.00383 1.19672 0.93940 0.92064 0.98463 0.88197 1.20474 0.78052 0.81999 0.86259 1.90644 1.39620 1.81554 1.33693 1.49080 1.47057 1.16026 1.22608 1.23347 0.94387 0.97918 0.88109 1.21245 0.88078 0.89646 0.94681 0.92374 1.42976 1.25963 1.65301 1.04254 1.19036 1.04792 1.27451 0.84387 0.92056 1.25382 0.99944 1.02151 0.97507 1.69865 1.26901 1.49639 1.16857 0.85633 0.78053 0.79232 0.80225 1.20576 1.22797 1.17206 1.21698 0.97179 0.95013 0.94477 1.21744 0.93661 1.00503 1.02392 1.21752 0.98461 0.97723 1.01492 1.22440 1.02378 0.83242 0.92477 0.89468 0.87712 0.88863 0.80519 0.88717 0.89192 0.91058 0.88069 0.92137 0.90078 0.90891 0.90163 0.79089 0.93502 0.92683 0.90938 0.93214 0.92931 0.90152 0.92671 0.90086 0.90544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.37 11.47 127.77 1.47 2.84 16 2 N -0.39 -9.47 4.02 -369.96 -1.49 -10.95 16 3 C 0.07 1.92 10.46 83.33 0.87 2.80 16 4 C -0.24 -6.42 5.04 -20.10 -0.10 -6.52 16 5 C 0.08 1.98 7.10 43.44 0.31 2.29 16 6 N -0.32 -9.04 12.56 -47.14 -0.59 -9.64 16 7 C -0.04 -0.71 6.31 30.05 0.19 -0.52 16 8 C -0.11 -1.77 5.86 30.74 0.18 -1.59 16 9 C -0.10 -2.15 5.17 30.74 0.16 -1.99 16 10 C -0.02 -0.48 2.54 -12.10 -0.03 -0.51 16 11 H 0.10 2.42 6.57 -2.39 -0.02 2.40 16 12 C 0.54 15.78 6.79 87.66 0.60 16.37 16 13 O -0.58 -20.08 16.04 -3.03 -0.05 -20.13 16 14 N -0.62 -17.02 3.32 -807.26 -2.68 -19.70 16 15 C 0.09 2.61 6.61 86.48 0.57 3.18 16 16 C 0.17 5.77 3.33 45.90 0.15 5.93 16 17 H 0.06 2.09 7.67 -2.38 -0.02 2.07 16 18 N -0.74 -30.48 4.41 -318.65 -1.41 -31.89 16 19 C -0.23 -11.74 10.45 84.03 0.88 -10.86 16 20 H 0.06 3.51 8.06 -2.91 -0.02 3.49 16 21 C -0.06 -3.23 5.50 84.86 0.47 -2.76 16 22 N -0.98 -60.22 13.97 21.65 0.30 -59.91 16 23 Si 0.94 42.59 27.74 68.60 1.90 44.49 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 25 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 26 H -0.25 -9.88 6.52 99.48 0.65 -9.23 16 27 C -0.08 -2.19 1.03 -51.28 -0.05 -2.24 16 28 C -0.13 -3.01 8.24 71.98 0.59 -2.42 16 29 C -0.14 -3.52 7.11 71.98 0.51 -3.01 16 30 C 0.12 3.02 6.16 86.53 0.53 3.55 16 31 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.18 4.05 8.06 -2.91 -0.02 4.03 16 35 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.07 1.22 8.10 -2.39 -0.02 1.20 16 38 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.06 1.39 8.07 -2.39 -0.02 1.37 16 40 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.07 2.27 8.06 -2.39 -0.02 2.25 16 42 H 0.08 2.31 6.60 -2.39 -0.02 2.29 16 43 H 0.37 14.73 2.91 -92.71 -0.27 14.46 16 44 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 45 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.05 1.41 6.95 -2.39 -0.02 1.39 16 49 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 50 H 0.05 1.61 7.74 -2.39 -0.02 1.59 16 51 H 0.08 2.08 7.56 -2.39 -0.02 2.06 16 52 H 0.08 1.86 7.84 -2.39 -0.02 1.84 16 Total: -1.00 -72.06 404.05 3.86 -68.19 By element: Atomic # 1 Polarization: 34.44 SS G_CDS: 0.58 Total: 35.02 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 7.29 Total: 4.52 kcal Atomic # 7 Polarization: -126.23 SS G_CDS: -5.86 Total: -132.10 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.05 Total: -20.13 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 1.90 Total: 44.49 kcal Total: -72.06 3.86 -68.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996210071.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.271 kcal (2) G-P(sol) polarization free energy of solvation -72.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds