Wall clock time and date at job start Wed Apr 1 2020 04:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35203 * 125.99947 * 2 1 4 4 C 1.34573 * 107.61360 * 179.97438 * 3 2 1 5 5 C 1.40552 * 108.08553 * 0.05684 * 4 3 2 6 6 N 1.30123 * 108.21097 * 359.87354 * 5 4 3 7 7 C 1.50948 * 123.49980 * 179.79013 * 5 4 3 8 8 C 1.53373 * 108.20909 * 343.34714 * 7 5 4 9 9 C 1.53027 * 109.75342 * 50.65514 * 8 7 5 10 10 C 1.50880 * 128.32483 * 180.12682 * 4 3 2 11 11 H 1.08994 * 109.72200 * 283.05806 * 10 4 3 12 12 C 1.50698 * 109.71774 * 43.66493 * 10 4 3 13 13 O 1.21289 * 120.00285 * 33.79918 * 12 10 4 14 14 N 1.34779 * 120.00273 * 213.79440 * 12 10 4 15 15 C 1.48148 * 127.83279 * 354.96649 * 14 12 10 16 16 C 1.54396 * 104.61425 * 219.57757 * 15 14 12 17 17 H 1.09001 * 110.42601 * 95.04619 * 16 15 14 18 18 N 1.46491 * 110.34596 * 217.26161 * 16 15 14 19 19 C 1.36935 * 120.00177 * 270.54142 * 18 16 15 20 20 H 1.08000 * 120.00260 * 359.97438 * 19 18 16 21 21 C 1.38812 * 120.00462 * 179.72037 * 19 18 16 22 22 N 1.31629 * 119.99652 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00462 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.46783 * 60.00398 * 23 21 19 25 25 H 1.48502 * 109.47107 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47002 * 300.00349 * 23 21 19 27 27 C 1.54284 * 104.95844 * 336.13743 * 16 15 14 28 28 C 1.52998 * 110.34513 * 118.87025 * 27 16 15 29 29 C 1.52998 * 110.33708 * 241.02000 * 27 16 15 30 30 C 1.48145 * 127.83966 * 174.95525 * 14 12 10 31 31 H 1.08996 * 109.47194 * 89.99841 * 1 2 3 32 32 H 1.09007 * 109.46862 * 209.99659 * 1 2 3 33 33 H 1.08997 * 109.47417 * 329.99406 * 1 2 3 34 34 H 1.07993 * 126.19141 * 359.97438 * 3 2 1 35 35 H 1.08994 * 109.71683 * 223.66365 * 7 5 4 36 36 H 1.09003 * 109.74994 * 103.04172 * 7 5 4 37 37 H 1.08999 * 109.41863 * 290.57115 * 8 7 5 38 38 H 1.08992 * 109.42519 * 170.74259 * 8 7 5 39 39 H 1.09002 * 109.42767 * 168.22567 * 9 8 7 40 40 H 1.08993 * 109.42705 * 48.37857 * 9 8 7 41 41 H 1.09001 * 110.40788 * 100.80063 * 15 14 12 42 42 H 1.08994 * 110.40716 * 338.36081 * 15 14 12 43 43 H 0.97003 * 120.00479 * 90.53516 * 18 16 15 44 44 H 0.96996 * 119.99573 * 179.97438 * 22 21 19 45 45 H 1.09008 * 109.47191 * 59.99503 * 28 27 16 46 46 H 1.09000 * 109.47298 * 179.97438 * 28 27 16 47 47 H 1.09001 * 109.46940 * 299.99665 * 28 27 16 48 48 H 1.09002 * 109.47538 * 60.00093 * 29 27 16 49 49 H 1.09005 * 109.46952 * 180.02562 * 29 27 16 50 50 H 1.09008 * 109.47469 * 299.99814 * 29 27 16 51 51 H 1.08995 * 110.40453 * 21.63867 * 30 14 12 52 52 H 1.08998 * 110.40875 * 259.20281 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2597 1.0938 0.0000 4 6 3.5368 0.6694 0.0006 5 6 3.5294 -0.7361 -0.0004 6 7 2.2912 -1.1363 0.0012 7 6 4.7837 -1.5758 -0.0047 8 6 5.9572 -0.6823 -0.4251 9 6 5.9648 0.5933 0.4203 10 6 4.7980 1.4975 0.0034 11 1 4.9793 1.8950 -0.9951 12 6 4.6587 2.6326 0.9848 13 8 4.0196 2.4781 2.0041 14 7 5.2443 3.8195 0.7301 15 6 6.1408 4.1671 -0.3969 16 6 7.2229 5.0720 0.2308 17 1 8.0984 4.4837 0.5054 18 7 7.5985 6.1382 -0.7009 19 6 8.6125 5.9370 -1.5989 20 1 9.1356 4.9924 -1.6200 21 6 8.9646 6.9452 -2.4857 22 7 8.3241 8.0949 -2.4631 23 14 10.3484 6.6709 -3.7102 24 1 10.0114 5.5221 -4.5887 25 1 10.5267 7.8914 -4.5372 26 1 11.6073 6.3815 -2.9778 27 6 6.5612 5.6688 1.4904 28 6 7.3326 5.2525 2.7444 29 6 6.4997 7.1940 1.3868 30 6 5.1374 5.0723 1.5134 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3634 0.8899 0.5139 34 1 1.9294 2.1220 -0.0004 35 1 4.6743 -2.3967 -0.7134 36 1 4.9640 -1.9738 0.9939 37 1 5.8533 -0.4189 -1.4777 38 1 6.8935 -1.2204 -0.2777 39 1 6.9055 1.1227 0.2693 40 1 5.8620 0.3310 1.4732 41 1 5.5914 4.7095 -1.1663 42 1 6.5931 3.2674 -0.8142 43 1 7.1289 6.9868 -0.6819 44 1 8.5704 8.7995 -3.0825 45 1 8.3587 5.6141 2.6766 46 1 6.8539 5.6816 3.6246 47 1 7.3350 4.1655 2.8253 48 1 5.9151 7.4755 0.5109 49 1 6.0308 7.6005 2.2830 50 1 7.5099 7.5929 1.2930 51 1 4.8326 4.8556 2.5372 52 1 4.4312 5.7561 1.0422 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996210075.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:39 Heat of formation + Delta-G solvation = 56.731028 kcal Electronic energy + Delta-G solvation = -31794.542070 eV Core-core repulsion = 27795.873994 eV Total energy + Delta-G solvation = -3998.668076 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.59921 -39.90084 -38.09025 -36.44578 -34.10217 -33.24481 -32.71010 -31.84567 -30.81187 -28.85812 -27.63019 -27.32533 -26.87931 -26.13330 -23.91386 -23.50620 -21.99672 -21.73310 -21.04248 -19.11007 -18.76328 -18.32660 -17.36317 -16.85165 -16.60149 -15.64938 -15.43182 -15.21111 -14.78974 -14.75542 -14.56111 -14.03682 -13.95419 -13.77314 -13.54205 -13.28005 -13.03789 -12.92470 -12.89698 -12.60692 -12.53359 -12.45393 -12.02992 -11.78788 -11.69746 -11.59083 -11.32424 -11.19735 -11.12761 -10.96796 -10.92096 -10.88749 -10.53230 -10.46278 -10.39622 -10.23379 -9.88207 -9.67973 -9.45601 -9.26732 -9.02427 -8.34719 -8.32011 -7.06674 -5.85629 -3.15291 1.86282 2.39815 2.67625 2.85771 3.31826 3.39128 3.44562 3.44841 4.19601 4.51415 4.63408 4.68516 4.75727 4.84922 4.91845 4.95036 5.07491 5.11971 5.15842 5.18493 5.22181 5.28450 5.40563 5.46803 5.49714 5.54696 5.66799 5.69085 5.73243 5.79021 5.82882 5.89249 5.93633 6.00608 6.03393 6.07128 6.12303 6.17753 6.22803 6.28467 6.32386 6.36302 6.45907 6.51928 6.61460 6.64293 6.84499 6.95589 6.96306 7.62729 7.66949 7.90354 8.32867 8.44593 9.44998 10.00098 10.34848 11.36472 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012447 B = 0.002977 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.075023 B = 9403.171603 C =10285.830942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.387 5.387 3 C 0.081 3.919 4 C -0.216 4.216 5 C 0.087 3.913 6 N -0.295 5.295 7 C -0.038 4.038 8 C -0.113 4.113 9 C -0.106 4.106 10 C -0.022 4.022 11 H 0.095 0.905 12 C 0.538 3.462 13 O -0.549 6.549 14 N -0.618 5.618 15 C 0.075 3.925 16 C 0.177 3.823 17 H 0.063 0.937 18 N -0.715 5.715 19 C -0.247 4.247 20 H 0.070 0.930 21 C -0.008 4.008 22 N -0.931 5.931 23 Si 0.906 3.094 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.088 4.088 28 C -0.130 4.130 29 C -0.130 4.130 30 C 0.116 3.884 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.168 0.832 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.391 0.609 44 H 0.257 0.743 45 H 0.059 0.941 46 H 0.049 0.951 47 H 0.050 0.950 48 H 0.061 0.939 49 H 0.044 0.956 50 H 0.072 0.928 51 H 0.075 0.925 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.518 -13.785 6.110 18.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.169 5.169 3 C -0.064 4.064 4 C -0.227 4.227 5 C -0.081 4.081 6 N -0.116 5.116 7 C -0.077 4.077 8 C -0.151 4.151 9 C -0.144 4.144 10 C -0.044 4.044 11 H 0.113 0.887 12 C 0.327 3.673 13 O -0.427 6.427 14 N -0.351 5.351 15 C -0.051 4.051 16 C 0.064 3.936 17 H 0.081 0.919 18 N -0.358 5.358 19 C -0.378 4.378 20 H 0.088 0.912 21 C -0.205 4.205 22 N -0.578 5.578 23 Si 0.737 3.263 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.090 4.090 28 C -0.187 4.187 29 C -0.188 4.188 30 C -0.007 4.007 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.186 0.814 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.228 0.772 44 H 0.066 0.934 45 H 0.078 0.922 46 H 0.068 0.932 47 H 0.069 0.931 48 H 0.080 0.920 49 H 0.063 0.937 50 H 0.091 0.909 51 H 0.093 0.907 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.739 -14.968 6.546 20.117 hybrid contribution 0.883 1.091 -0.869 1.651 sum -10.855 -13.877 5.676 18.510 Atomic orbital electron populations 1.21785 0.74374 1.04305 1.03044 1.48437 1.06273 1.03399 1.58801 1.21899 0.90724 0.93123 1.00649 1.19414 0.93275 0.93277 1.16766 1.22272 0.93353 0.93460 0.99012 1.77020 1.01106 1.07998 1.25512 1.20137 0.88461 0.96359 1.02731 1.21550 0.97617 0.95502 1.00410 1.21491 0.96724 0.95396 1.00763 1.19635 0.93199 0.92622 0.98954 0.88662 1.20133 0.78406 0.81925 0.86862 1.90660 1.42327 1.82048 1.27628 1.49076 1.48030 1.09681 1.28337 1.23687 0.92199 1.00053 0.89164 1.21108 0.93963 0.90105 0.88398 0.91873 1.42709 1.40684 1.13503 1.38927 1.19215 1.09440 0.98987 1.10120 0.91156 1.24735 0.99742 0.96144 0.99871 1.69644 1.43357 1.04717 1.40116 0.86288 0.82045 0.76829 0.81122 1.21190 1.21737 1.21231 1.21756 0.94177 0.96490 0.96571 1.21782 1.00195 1.00674 0.96066 1.21681 1.03291 0.93257 1.00525 1.22410 0.96888 0.84759 0.96613 0.91019 0.89511 0.89636 0.81444 0.90010 0.89844 0.91099 0.90474 0.90607 0.91011 0.90658 0.91136 0.77169 0.93352 0.92195 0.93154 0.93079 0.92048 0.93739 0.90893 0.90658 0.91468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.83 11.47 59.85 0.69 1.52 16 2 N -0.39 -4.89 4.03 -68.29 -0.28 -5.16 16 3 C 0.08 1.07 10.66 -17.36 -0.19 0.89 16 4 C -0.22 -3.01 5.05 -104.96 -0.53 -3.54 16 5 C 0.09 1.18 7.10 -82.32 -0.58 0.60 16 6 N -0.30 -4.23 12.57 33.76 0.42 -3.81 16 7 C -0.04 -0.39 6.31 -27.57 -0.17 -0.56 16 8 C -0.11 -1.06 5.86 -26.52 -0.16 -1.21 16 9 C -0.11 -1.21 5.17 -26.52 -0.14 -1.35 16 10 C -0.02 -0.29 2.33 -92.64 -0.22 -0.50 16 11 H 0.10 1.22 7.06 -51.93 -0.37 0.85 16 12 C 0.54 8.43 6.67 -10.99 -0.07 8.36 16 13 O -0.55 -10.20 16.36 5.55 0.09 -10.11 16 14 N -0.62 -9.48 3.32 -169.30 -0.56 -10.04 16 15 C 0.07 1.21 6.32 -2.40 -0.02 1.19 16 16 C 0.18 3.17 3.35 -66.53 -0.22 2.95 16 17 H 0.06 1.17 7.66 -51.93 -0.40 0.78 16 18 N -0.72 -16.06 4.57 -52.07 -0.24 -16.30 16 19 C -0.25 -6.27 9.96 -15.06 -0.15 -6.42 16 20 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 21 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 22 N -0.93 -26.38 13.06 55.49 0.72 -25.65 16 23 Si 0.91 21.22 29.55 -169.99 -5.02 16.20 16 24 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 27 C -0.09 -1.37 1.03 -153.11 -0.16 -1.53 16 28 C -0.13 -1.84 8.24 37.16 0.31 -1.53 16 29 C -0.13 -2.07 7.12 37.16 0.26 -1.80 16 30 C 0.12 1.75 6.16 -2.41 -0.01 1.73 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.17 1.98 8.06 -52.49 -0.42 1.55 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.67 8.10 -51.93 -0.42 0.24 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.90 8.07 -51.93 -0.42 0.48 16 41 H 0.08 1.32 8.06 -51.93 -0.42 0.91 16 42 H 0.07 1.06 7.16 -51.93 -0.37 0.69 16 43 H 0.39 9.27 5.11 -40.82 -0.21 9.06 16 44 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 45 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 46 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 48 H 0.06 1.04 6.93 -51.93 -0.36 0.68 16 49 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.07 1.32 7.76 -51.92 -0.40 0.91 16 51 H 0.07 1.14 7.57 -51.93 -0.39 0.75 16 52 H 0.07 0.99 7.84 -51.93 -0.41 0.58 16 LS Contribution 408.13 15.07 6.15 6.15 Total: -1.00 -32.00 408.13 -8.95 -40.95 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -8.78 Total: 9.33 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -1.45 Total: -1.54 kcal Atomic # 7 Polarization: -61.05 SS G_CDS: 0.07 Total: -60.97 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.00 -8.95 -40.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996210075.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.676 kcal (2) G-P(sol) polarization free energy of solvation -31.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds