Wall clock time and date at job start Wed Apr 1 2020 04:17:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46503 * 1
3 3 C 1.35203 * 125.99947 * 2 1
4 4 C 1.34573 * 107.61360 * 179.97438 * 3 2 1
5 5 C 1.40552 * 108.08553 * 0.05684 * 4 3 2
6 6 N 1.30123 * 108.21097 * 359.87354 * 5 4 3
7 7 C 1.50948 * 123.49980 * 179.79013 * 5 4 3
8 8 C 1.53373 * 108.20909 * 343.34714 * 7 5 4
9 9 C 1.53027 * 109.75342 * 50.65514 * 8 7 5
10 10 C 1.50880 * 128.32483 * 180.12682 * 4 3 2
11 11 H 1.08994 * 109.72200 * 283.05806 * 10 4 3
12 12 C 1.50698 * 109.71774 * 43.66493 * 10 4 3
13 13 O 1.21289 * 120.00285 * 33.79918 * 12 10 4
14 14 N 1.34779 * 120.00273 * 213.79440 * 12 10 4
15 15 C 1.48148 * 127.83279 * 354.96649 * 14 12 10
16 16 C 1.54396 * 104.61425 * 219.57757 * 15 14 12
17 17 H 1.09001 * 110.42601 * 95.04619 * 16 15 14
18 18 N 1.46491 * 110.34596 * 217.26161 * 16 15 14
19 19 C 1.36935 * 120.00177 * 270.54142 * 18 16 15
20 20 H 1.08000 * 120.00260 * 359.97438 * 19 18 16
21 21 C 1.38812 * 120.00462 * 179.72037 * 19 18 16
22 22 N 1.31629 * 119.99652 * 0.02562 * 21 19 18
23 23 Si 1.86800 * 120.00462 * 179.97438 * 21 19 18
24 24 H 1.48493 * 109.46783 * 60.00398 * 23 21 19
25 25 H 1.48502 * 109.47107 * 180.02562 * 23 21 19
26 26 H 1.48498 * 109.47002 * 300.00349 * 23 21 19
27 27 C 1.54284 * 104.95844 * 336.13743 * 16 15 14
28 28 C 1.52998 * 110.34513 * 118.87025 * 27 16 15
29 29 C 1.52998 * 110.33708 * 241.02000 * 27 16 15
30 30 C 1.48145 * 127.83966 * 174.95525 * 14 12 10
31 31 H 1.08996 * 109.47194 * 89.99841 * 1 2 3
32 32 H 1.09007 * 109.46862 * 209.99659 * 1 2 3
33 33 H 1.08997 * 109.47417 * 329.99406 * 1 2 3
34 34 H 1.07993 * 126.19141 * 359.97438 * 3 2 1
35 35 H 1.08994 * 109.71683 * 223.66365 * 7 5 4
36 36 H 1.09003 * 109.74994 * 103.04172 * 7 5 4
37 37 H 1.08999 * 109.41863 * 290.57115 * 8 7 5
38 38 H 1.08992 * 109.42519 * 170.74259 * 8 7 5
39 39 H 1.09002 * 109.42767 * 168.22567 * 9 8 7
40 40 H 1.08993 * 109.42705 * 48.37857 * 9 8 7
41 41 H 1.09001 * 110.40788 * 100.80063 * 15 14 12
42 42 H 1.08994 * 110.40716 * 338.36081 * 15 14 12
43 43 H 0.97003 * 120.00479 * 90.53516 * 18 16 15
44 44 H 0.96996 * 119.99573 * 179.97438 * 22 21 19
45 45 H 1.09008 * 109.47191 * 59.99503 * 28 27 16
46 46 H 1.09000 * 109.47298 * 179.97438 * 28 27 16
47 47 H 1.09001 * 109.46940 * 299.99665 * 28 27 16
48 48 H 1.09002 * 109.47538 * 60.00093 * 29 27 16
49 49 H 1.09005 * 109.46952 * 180.02562 * 29 27 16
50 50 H 1.09008 * 109.47469 * 299.99814 * 29 27 16
51 51 H 1.08995 * 110.40453 * 21.63867 * 30 14 12
52 52 H 1.08998 * 110.40875 * 259.20281 * 30 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2597 1.0938 0.0000
4 6 3.5368 0.6694 0.0006
5 6 3.5294 -0.7361 -0.0004
6 7 2.2912 -1.1363 0.0012
7 6 4.7837 -1.5758 -0.0047
8 6 5.9572 -0.6823 -0.4251
9 6 5.9648 0.5933 0.4203
10 6 4.7980 1.4975 0.0034
11 1 4.9793 1.8950 -0.9951
12 6 4.6587 2.6326 0.9848
13 8 4.0196 2.4781 2.0041
14 7 5.2443 3.8195 0.7301
15 6 6.1408 4.1671 -0.3969
16 6 7.2229 5.0720 0.2308
17 1 8.0984 4.4837 0.5054
18 7 7.5985 6.1382 -0.7009
19 6 8.6125 5.9370 -1.5989
20 1 9.1356 4.9924 -1.6200
21 6 8.9646 6.9452 -2.4857
22 7 8.3241 8.0949 -2.4631
23 14 10.3484 6.6709 -3.7102
24 1 10.0114 5.5221 -4.5887
25 1 10.5267 7.8914 -4.5372
26 1 11.6073 6.3815 -2.9778
27 6 6.5612 5.6688 1.4904
28 6 7.3326 5.2525 2.7444
29 6 6.4997 7.1940 1.3868
30 6 5.1374 5.0723 1.5134
31 1 -0.3633 0.0000 -1.0276
32 1 -0.3633 -0.8901 0.5138
33 1 -0.3634 0.8899 0.5139
34 1 1.9294 2.1220 -0.0004
35 1 4.6743 -2.3967 -0.7134
36 1 4.9640 -1.9738 0.9939
37 1 5.8533 -0.4189 -1.4777
38 1 6.8935 -1.2204 -0.2777
39 1 6.9055 1.1227 0.2693
40 1 5.8620 0.3310 1.4732
41 1 5.5914 4.7095 -1.1663
42 1 6.5931 3.2674 -0.8142
43 1 7.1289 6.9868 -0.6819
44 1 8.5704 8.7995 -3.0825
45 1 8.3587 5.6141 2.6766
46 1 6.8539 5.6816 3.6246
47 1 7.3350 4.1655 2.8253
48 1 5.9151 7.4755 0.5109
49 1 6.0308 7.6005 2.2830
50 1 7.5099 7.5929 1.2930
51 1 4.8326 4.8556 2.5372
52 1 4.4312 5.7561 1.0422
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000996210075.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:17:38
Heat of formation + Delta-G solvation = 38.427492 kcal
Electronic energy + Delta-G solvation = -31795.335771 eV
Core-core repulsion = 27795.873994 eV
Total energy + Delta-G solvation = -3999.461777 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-42.57209 -41.18407 -39.38567 -37.39430 -35.78908 -34.60725 -33.65701 -32.76628
-32.57247 -29.84875 -29.12119 -28.22249 -28.15922 -27.28213 -25.65852 -24.51191
-23.16985 -22.86001 -22.06968 -20.25956 -19.90453 -19.57309 -19.13477 -18.08814
-17.58052 -16.95339 -16.56938 -16.30304 -16.23891 -15.71803 -15.66319 -15.50657
-15.36353 -15.04347 -14.66657 -14.47185 -14.26620 -13.91229 -13.85291 -13.73536
-13.55454 -13.36319 -13.25205 -13.16790 -12.96163 -12.78776 -12.72388 -12.66975
-12.46530 -12.22592 -12.08072 -12.04224 -12.00001 -11.83390 -11.71664 -11.42818
-11.35428 -11.28477 -10.88833 -10.68340 -10.22035 -9.69342 -9.29336 -8.93604
-7.87699 -5.15377 0.88803 1.53996 1.54439 1.55141 1.60864 1.63701
1.67854 2.09951 2.62555 3.30661 3.44877 3.48903 3.75986 3.81691
3.83806 3.89837 3.97240 4.06769 4.14467 4.17102 4.28389 4.32754
4.39397 4.40304 4.45329 4.48939 4.61501 4.62500 4.66199 4.67410
4.70294 4.80032 4.88476 4.89737 4.91723 4.96462 5.03793 5.05662
5.11197 5.16719 5.18698 5.21148 5.25346 5.37252 5.42089 5.47488
5.55377 5.64593 5.69295 6.07598 6.34240 6.62748 6.70269 7.18754
7.42728 8.16681 8.40809 9.35125
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.012447 B = 0.002977 C = 0.002722
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2249.075023 B = 9403.171603 C =10285.830942
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.097 3.903
2 N -0.389 5.389
3 C 0.071 3.929
4 C -0.237 4.237
5 C 0.078 3.922
6 N -0.322 5.322
7 C -0.038 4.038
8 C -0.105 4.105
9 C -0.104 4.104
10 C -0.017 4.017
11 H 0.100 0.900
12 C 0.541 3.459
13 O -0.578 6.578
14 N -0.614 5.614
15 C 0.088 3.912
16 C 0.171 3.829
17 H 0.061 0.939
18 N -0.725 5.725
19 C -0.237 4.237
20 H 0.079 0.921
21 C -0.070 4.070
22 N -0.967 5.967
23 Si 0.964 3.036
24 H -0.277 1.277
25 H -0.302 1.302
26 H -0.281 1.281
27 C -0.082 4.082
28 C -0.124 4.124
29 C -0.122 4.122
30 C 0.118 3.882
31 H 0.087 0.913
32 H 0.093 0.907
33 H 0.104 0.896
34 H 0.177 0.823
35 H 0.096 0.904
36 H 0.090 0.910
37 H 0.072 0.928
38 H 0.102 0.898
39 H 0.082 0.918
40 H 0.059 0.941
41 H 0.062 0.938
42 H 0.085 0.915
43 H 0.383 0.617
44 H 0.249 0.751
45 H 0.054 0.946
46 H 0.067 0.933
47 H 0.051 0.949
48 H 0.046 0.954
49 H 0.070 0.930
50 H 0.048 0.952
51 H 0.078 0.922
52 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.477 -15.415 6.397 19.705
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.043 4.043
2 N -0.171 5.171
3 C -0.075 4.075
4 C -0.249 4.249
5 C -0.090 4.090
6 N -0.144 5.144
7 C -0.077 4.077
8 C -0.143 4.143
9 C -0.142 4.142
10 C -0.040 4.040
11 H 0.118 0.882
12 C 0.331 3.669
13 O -0.458 6.458
14 N -0.347 5.347
15 C -0.038 4.038
16 C 0.060 3.940
17 H 0.079 0.921
18 N -0.367 5.367
19 C -0.369 4.369
20 H 0.096 0.904
21 C -0.262 4.262
22 N -0.617 5.617
23 Si 0.794 3.206
24 H -0.204 1.204
25 H -0.229 1.229
26 H -0.207 1.207
27 C -0.083 4.083
28 C -0.181 4.181
29 C -0.179 4.179
30 C -0.005 4.005
31 H 0.106 0.894
32 H 0.112 0.888
33 H 0.122 0.878
34 H 0.194 0.806
35 H 0.114 0.886
36 H 0.108 0.892
37 H 0.091 0.909
38 H 0.120 0.880
39 H 0.100 0.900
40 H 0.078 0.922
41 H 0.080 0.920
42 H 0.104 0.896
43 H 0.219 0.781
44 H 0.058 0.942
45 H 0.073 0.927
46 H 0.086 0.914
47 H 0.070 0.930
48 H 0.064 0.936
49 H 0.089 0.911
50 H 0.067 0.933
51 H 0.097 0.903
52 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges -11.713 -16.654 6.853 21.483
hybrid contribution 0.767 1.568 -0.866 1.948
sum -10.947 -15.086 5.987 19.577
Atomic orbital electron populations
1.22132 0.72077 1.05600 1.04524 1.48816 1.07667 1.02758 1.57902
1.22163 0.91078 0.93791 1.00443 1.19632 0.93674 0.93800 1.17827
1.22783 0.94084 0.93749 0.98395 1.76958 1.01768 1.09138 1.26532
1.20283 0.87355 0.96508 1.03557 1.21536 0.98411 0.94449 0.99907
1.21511 0.96029 0.96162 1.00466 1.19651 0.93987 0.92000 0.98318
0.88190 1.20548 0.77460 0.82112 0.86740 1.90645 1.43599 1.82472
1.29047 1.49049 1.47828 1.09856 1.27946 1.23351 0.91546 1.00071
0.88807 1.21272 0.94542 0.89401 0.88739 0.92129 1.42835 1.40202
1.14350 1.39304 1.19601 1.09107 0.98746 1.09453 0.90350 1.25425
1.02305 0.96302 1.02172 1.69792 1.45227 1.05514 1.41193 0.85345
0.79783 0.76273 0.79149 1.20353 1.22889 1.20718 1.21693 0.94463
0.96091 0.96073 1.21729 0.99786 1.00739 0.95893 1.21571 1.01714
0.93554 1.01103 1.22405 0.96472 0.84727 0.96862 0.89422 0.88840
0.87769 0.80557 0.88609 0.89222 0.90916 0.87995 0.89988 0.92175
0.91984 0.89637 0.78103 0.94222 0.92732 0.91362 0.93035 0.93551
0.91107 0.93312 0.90310 0.91111
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 1.37 11.47 127.77 1.47 2.84 16
2 N -0.39 -9.47 4.03 -369.97 -1.49 -10.96 16
3 C 0.07 1.83 10.66 83.33 0.89 2.72 16
4 C -0.24 -6.42 5.05 -20.08 -0.10 -6.52 16
5 C 0.08 2.02 7.10 43.45 0.31 2.33 16
6 N -0.32 -8.97 12.57 -47.10 -0.59 -9.57 16
7 C -0.04 -0.71 6.31 30.05 0.19 -0.52 16
8 C -0.11 -1.72 5.86 30.73 0.18 -1.54 16
9 C -0.10 -2.20 5.17 30.73 0.16 -2.04 16
10 C -0.02 -0.44 2.33 -12.10 -0.03 -0.47 16
11 H 0.10 2.41 7.06 -2.39 -0.02 2.39 16
12 C 0.54 16.36 6.67 87.66 0.58 16.94 16
13 O -0.58 -20.99 16.36 -3.06 -0.05 -21.04 16
14 N -0.61 -18.08 3.32 -807.94 -2.68 -20.76 16
15 C 0.09 2.74 6.32 86.54 0.55 3.29 16
16 C 0.17 6.00 3.35 45.90 0.15 6.15 16
17 H 0.06 2.17 7.66 -2.39 -0.02 2.15 16
18 N -0.72 -32.52 4.57 -318.66 -1.46 -33.97 16
19 C -0.24 -11.96 9.96 84.03 0.84 -11.12 16
20 H 0.08 3.75 7.83 -2.91 -0.02 3.73 16
21 C -0.07 -3.73 5.50 84.86 0.47 -3.26 16
22 N -0.97 -55.76 13.06 21.65 0.28 -55.48 16
23 Si 0.96 43.64 29.55 68.60 2.03 45.67 16
24 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16
25 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16
26 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16
27 C -0.08 -2.44 1.03 -51.28 -0.05 -2.49 16
28 C -0.12 -3.30 8.24 71.98 0.59 -2.71 16
29 C -0.12 -3.81 7.12 71.98 0.51 -3.30 16
30 C 0.12 3.40 6.16 86.53 0.53 3.93 16
31 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16
32 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16
33 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16
34 H 0.18 4.05 8.06 -2.91 -0.02 4.02 16
35 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16
36 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16
37 H 0.07 1.18 8.10 -2.39 -0.02 1.16 16
38 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16
39 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16
40 H 0.06 1.42 8.07 -2.39 -0.02 1.40 16
41 H 0.06 2.14 8.06 -2.39 -0.02 2.12 16
42 H 0.09 2.41 7.16 -2.39 -0.02 2.40 16
43 H 0.38 18.43 5.11 -92.71 -0.47 17.96 16
44 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16
45 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16
46 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16
47 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16
48 H 0.05 1.58 6.93 -2.39 -0.02 1.57 16
49 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16
50 H 0.05 1.76 7.76 -2.38 -0.02 1.74 16
51 H 0.08 2.25 7.57 -2.39 -0.02 2.24 16
52 H 0.07 2.00 7.84 -2.39 -0.02 1.98 16
Total: -1.00 -68.56 408.13 3.71 -64.85
By element:
Atomic # 1 Polarization: 36.59 SS G_CDS: 0.43 Total: 37.03 kcal
Atomic # 6 Polarization: -3.00 SS G_CDS: 7.24 Total: 4.23 kcal
Atomic # 7 Polarization: -124.80 SS G_CDS: -5.93 Total: -130.74 kcal
Atomic # 8 Polarization: -20.99 SS G_CDS: -0.05 Total: -21.04 kcal
Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal
Total: -68.56 3.71 -64.85 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000996210075.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 103.275 kcal
(2) G-P(sol) polarization free energy of solvation -68.561 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.715 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.713 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.848 kcal
(6) G-S(sol) free energy of system = (1) + (5) 38.427 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds