Wall clock time and date at job start Wed Apr 1 2020 04:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35203 * 126.00280 * 2 1 4 4 C 1.34573 * 107.61485 * 179.97438 * 3 2 1 5 5 C 1.40492 * 108.03932 * 0.09744 * 4 3 2 6 6 N 1.30126 * 108.22928 * 359.87347 * 5 4 3 7 7 C 1.50944 * 123.48058 * 179.68579 * 5 4 3 8 8 C 1.53376 * 108.21044 * 343.39549 * 7 5 4 9 9 C 1.53028 * 109.74040 * 50.65218 * 8 7 5 10 10 C 1.50881 * 128.32132 * 180.13578 * 4 3 2 11 11 H 1.08995 * 109.71652 * 283.15109 * 10 4 3 12 12 C 1.50692 * 109.72100 * 43.76144 * 10 4 3 13 13 O 1.21283 * 120.00311 * 34.93625 * 12 10 4 14 14 N 1.34782 * 119.99944 * 214.93659 * 12 10 4 15 15 C 1.48141 * 127.83816 * 354.91495 * 14 12 10 16 16 C 1.54390 * 104.62020 * 140.41652 * 15 14 12 17 17 H 1.08998 * 110.43030 * 264.94904 * 16 15 14 18 18 N 1.46495 * 110.34444 * 142.73682 * 16 15 14 19 19 C 1.36935 * 120.00442 * 89.46214 * 18 16 15 20 20 H 1.08004 * 119.99617 * 0.02562 * 19 18 16 21 21 C 1.38811 * 120.00285 * 179.97438 * 19 18 16 22 22 N 1.31614 * 119.99985 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99940 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47257 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47236 * 120.00059 * 23 21 19 26 26 H 1.48498 * 109.47346 * 240.00362 * 23 21 19 27 27 C 1.54286 * 104.95659 * 23.86243 * 16 15 14 28 28 C 1.53005 * 110.33906 * 118.87515 * 27 16 15 29 29 C 1.52998 * 110.34421 * 241.02281 * 27 16 15 30 30 C 1.48316 * 127.76905 * 174.84098 * 14 12 10 31 31 H 1.09000 * 109.47094 * 89.99647 * 1 2 3 32 32 H 1.09004 * 109.46765 * 209.99503 * 1 2 3 33 33 H 1.08998 * 109.47213 * 329.99468 * 1 2 3 34 34 H 1.08000 * 126.18916 * 359.93443 * 3 2 1 35 35 H 1.09003 * 109.71862 * 103.08078 * 7 5 4 36 36 H 1.09007 * 109.71073 * 223.67288 * 7 5 4 37 37 H 1.08998 * 109.42145 * 170.73215 * 8 7 5 38 38 H 1.09000 * 109.42411 * 290.62509 * 8 7 5 39 39 H 1.09002 * 109.42818 * 168.19636 * 9 8 7 40 40 H 1.09000 * 109.43292 * 48.34865 * 9 8 7 41 41 H 1.09000 * 110.40984 * 21.63239 * 15 14 12 42 42 H 1.08996 * 110.40527 * 259.19757 * 15 14 12 43 43 H 0.97003 * 119.99584 * 269.46094 * 18 16 15 44 44 H 0.97001 * 120.00222 * 180.02562 * 22 21 19 45 45 H 1.09003 * 109.46904 * 181.47252 * 28 27 16 46 46 H 1.08994 * 109.47427 * 61.47179 * 28 27 16 47 47 H 1.08998 * 109.47371 * 301.46986 * 28 27 16 48 48 H 1.09003 * 109.47415 * 298.53062 * 29 27 16 49 49 H 1.09002 * 109.47104 * 58.53085 * 29 27 16 50 50 H 1.09005 * 109.47050 * 178.52971 * 29 27 16 51 51 H 1.08998 * 110.38359 * 100.78913 * 30 14 12 52 52 H 1.09005 * 110.50627 * 338.31142 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2598 1.0938 0.0000 4 6 3.5368 0.6693 0.0006 5 6 3.5282 -0.7356 -0.0013 6 7 2.2898 -1.1352 -0.0003 7 6 4.7821 -1.5760 -0.0082 8 6 5.9556 -0.6824 -0.4287 9 6 5.9645 0.5919 0.4185 10 6 4.7980 1.4974 0.0036 11 1 4.9783 1.8964 -0.9945 12 6 4.6596 2.6310 0.9869 13 8 4.0389 2.4687 2.0161 14 7 5.2257 3.8252 0.7225 15 6 6.1004 4.1838 -0.4181 16 6 5.6497 5.6036 -0.8236 17 1 4.9226 5.5550 -1.6342 18 7 6.8052 6.4097 -1.2248 19 6 7.2163 6.4146 -2.5310 20 1 6.6883 5.8246 -3.2655 21 6 8.3109 7.1788 -2.9113 22 7 8.9541 7.8983 -2.0163 23 14 8.8712 7.1861 -4.6933 24 1 7.9868 6.3017 -5.4938 25 1 8.8021 8.5696 -5.2282 26 1 10.2696 6.6932 -4.7746 27 6 4.9994 6.1926 0.4455 28 6 5.7580 7.4407 0.9015 29 6 3.5306 6.5306 0.1827 30 6 5.1119 5.0782 1.5079 31 1 -0.3633 0.0001 -1.0277 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3633 0.8899 0.5139 34 1 1.9295 2.1220 -0.0010 35 1 4.9629 -1.9750 0.9899 36 1 4.6711 -2.3962 -0.7175 37 1 6.8918 -1.2212 -0.2829 38 1 5.8502 -0.4167 -1.4806 39 1 6.9055 1.1210 0.2679 40 1 5.8622 0.3282 1.4712 41 1 5.9526 3.4878 -1.2438 42 1 7.1453 4.1908 -0.1081 43 1 7.2792 6.9399 -0.5652 44 1 9.7188 8.4326 -2.2821 45 1 5.3032 7.8297 1.8126 46 1 5.7124 8.1993 0.1202 47 1 6.7988 7.1823 1.0967 48 1 3.4657 7.2814 -0.6048 49 1 3.0007 5.6305 -0.1289 50 1 3.0787 6.9208 1.0948 51 1 6.0020 5.2248 2.1199 52 1 4.2192 5.0573 2.1330 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996210080.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:43 Heat of formation + Delta-G solvation = 57.301818 kcal Electronic energy + Delta-G solvation = -31859.966006 eV Core-core repulsion = 27861.322681 eV Total energy + Delta-G solvation = -3998.643325 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.61361 -39.90039 -38.10699 -36.44501 -34.10413 -33.25262 -32.71221 -31.85075 -30.82295 -28.85670 -27.62054 -27.35078 -26.90780 -26.13999 -23.92133 -23.52131 -22.02703 -21.71686 -21.03232 -19.12060 -18.75855 -18.34603 -17.37889 -16.86061 -16.61244 -15.64573 -15.46477 -15.22803 -14.79592 -14.70994 -14.52320 -14.15510 -13.85696 -13.80543 -13.52330 -13.39046 -13.03165 -12.90170 -12.79672 -12.71503 -12.52104 -12.47068 -12.03227 -11.83146 -11.71941 -11.56891 -11.33608 -11.22782 -11.10987 -10.97887 -10.95206 -10.89177 -10.55495 -10.48430 -10.38695 -10.17774 -9.88070 -9.69168 -9.46364 -9.26078 -9.04169 -8.37087 -8.30352 -7.07110 -5.86430 -3.16066 1.86741 2.40405 2.67723 2.86447 3.31297 3.37793 3.44390 3.45986 4.19835 4.50725 4.63333 4.68622 4.74887 4.85731 4.93217 4.95393 5.03789 5.09850 5.15613 5.18816 5.20192 5.28141 5.39791 5.45335 5.48027 5.54786 5.64793 5.68198 5.72930 5.79545 5.82609 5.88050 5.93209 5.97797 6.03836 6.04950 6.12721 6.16526 6.22147 6.26625 6.29852 6.34661 6.44330 6.50350 6.60987 6.63096 6.82938 6.94632 6.95994 7.63047 7.67820 7.89957 8.31990 8.44520 9.44356 9.99391 10.34132 11.35778 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012113 B = 0.003069 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.973025 B = 9120.688730 C =10052.006063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.386 5.386 3 C 0.080 3.920 4 C -0.215 4.215 5 C 0.087 3.913 6 N -0.296 5.296 7 C -0.038 4.038 8 C -0.113 4.113 9 C -0.106 4.106 10 C -0.023 4.023 11 H 0.096 0.904 12 C 0.538 3.462 13 O -0.549 6.549 14 N -0.618 5.618 15 C 0.075 3.925 16 C 0.176 3.824 17 H 0.063 0.937 18 N -0.716 5.716 19 C -0.246 4.246 20 H 0.071 0.929 21 C -0.009 4.009 22 N -0.930 5.930 23 Si 0.905 3.095 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.291 1.291 27 C -0.089 4.089 28 C -0.129 4.129 29 C -0.129 4.129 30 C 0.117 3.883 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.169 0.831 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.391 0.609 44 H 0.256 0.744 45 H 0.044 0.956 46 H 0.071 0.929 47 H 0.062 0.938 48 H 0.059 0.941 49 H 0.048 0.952 50 H 0.049 0.951 51 H 0.068 0.932 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.107 -13.318 5.029 18.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.168 5.168 3 C -0.065 4.065 4 C -0.227 4.227 5 C -0.082 4.082 6 N -0.117 5.117 7 C -0.077 4.077 8 C -0.151 4.151 9 C -0.144 4.144 10 C -0.045 4.045 11 H 0.114 0.886 12 C 0.326 3.674 13 O -0.427 6.427 14 N -0.351 5.351 15 C -0.051 4.051 16 C 0.063 3.937 17 H 0.081 0.919 18 N -0.359 5.359 19 C -0.377 4.377 20 H 0.089 0.911 21 C -0.205 4.205 22 N -0.577 5.577 23 Si 0.736 3.264 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.218 1.218 27 C -0.090 4.090 28 C -0.187 4.187 29 C -0.187 4.187 30 C -0.005 4.005 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.186 0.814 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.229 0.771 44 H 0.066 0.934 45 H 0.063 0.937 46 H 0.090 0.910 47 H 0.081 0.919 48 H 0.078 0.922 49 H 0.068 0.932 50 H 0.069 0.931 51 H 0.086 0.914 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.420 -14.486 5.405 20.473 hybrid contribution 0.945 1.096 -0.825 1.666 sum -12.475 -13.390 4.579 18.865 Atomic orbital electron populations 1.21789 0.74361 1.04312 1.03064 1.48390 1.06286 1.03394 1.58718 1.21906 0.90717 0.93135 1.00737 1.19400 0.93274 0.93283 1.16700 1.22250 0.93340 0.93468 0.99108 1.76971 1.01120 1.08088 1.25484 1.20137 0.88483 0.96353 1.02717 1.21549 0.97610 0.95494 1.00402 1.21485 0.96719 0.95405 1.00748 1.19645 0.93201 0.92613 0.99024 0.88575 1.20124 0.78279 0.81947 0.87007 1.90660 1.42942 1.82021 1.27069 1.49126 1.49054 1.09288 1.27645 1.23697 0.94333 0.99659 0.87398 1.21109 0.90490 0.88621 0.93433 0.91938 1.42728 1.31886 1.52966 1.08292 1.19302 1.09646 1.22954 0.85772 0.91075 1.24731 0.98488 0.99653 0.97640 1.69657 1.22697 1.32896 1.32485 0.86151 0.78320 0.77259 0.84624 1.20514 1.21884 1.21832 1.21761 0.96098 0.95123 0.96054 1.21675 0.99743 0.96809 1.00498 1.21780 0.94607 1.01040 1.01241 1.22430 1.01669 0.82530 0.93910 0.91000 0.89511 0.89620 0.81428 0.89869 0.90009 0.90494 0.91087 0.90671 0.91034 0.91120 0.90483 0.77148 0.93442 0.93727 0.90981 0.91931 0.92161 0.93245 0.93145 0.91426 0.90754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.83 11.47 59.85 0.69 1.51 16 2 N -0.39 -4.86 4.02 -68.29 -0.27 -5.13 16 3 C 0.08 1.06 10.70 -17.36 -0.19 0.87 16 4 C -0.21 -2.99 5.05 -104.98 -0.53 -3.52 16 5 C 0.09 1.17 7.10 -82.35 -0.58 0.59 16 6 N -0.30 -4.23 12.56 33.75 0.42 -3.81 16 7 C -0.04 -0.39 6.31 -27.57 -0.17 -0.56 16 8 C -0.11 -1.06 5.86 -26.52 -0.16 -1.21 16 9 C -0.11 -1.22 5.17 -26.51 -0.14 -1.35 16 10 C -0.02 -0.30 2.57 -92.64 -0.24 -0.54 16 11 H 0.10 1.22 6.42 -51.93 -0.33 0.89 16 12 C 0.54 8.43 6.64 -10.99 -0.07 8.36 16 13 O -0.55 -10.23 16.47 5.55 0.09 -10.14 16 14 N -0.62 -9.47 3.32 -169.18 -0.56 -10.04 16 15 C 0.07 1.21 6.65 -2.41 -0.02 1.19 16 16 C 0.18 3.14 3.35 -66.53 -0.22 2.92 16 17 H 0.06 1.15 7.66 -51.93 -0.40 0.76 16 18 N -0.72 -16.03 4.59 -52.07 -0.24 -16.27 16 19 C -0.25 -6.24 9.96 -15.06 -0.15 -6.39 16 20 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 21 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 22 N -0.93 -26.32 13.06 55.49 0.72 -25.60 16 23 Si 0.91 21.21 29.55 -169.99 -5.02 16.19 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 27 C -0.09 -1.36 1.03 -153.11 -0.16 -1.52 16 28 C -0.13 -2.05 7.11 37.16 0.26 -1.79 16 29 C -0.13 -1.77 8.23 37.16 0.31 -1.46 16 30 C 0.12 1.76 6.14 -2.32 -0.01 1.75 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.17 1.97 8.06 -52.49 -0.42 1.54 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.07 0.90 8.07 -51.93 -0.42 0.48 16 41 H 0.07 1.06 6.43 -51.93 -0.33 0.73 16 42 H 0.08 1.35 8.06 -51.93 -0.42 0.94 16 43 H 0.39 9.26 5.09 -40.82 -0.21 9.05 16 44 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 45 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.07 1.29 7.84 -51.93 -0.41 0.88 16 47 H 0.06 1.07 6.86 -51.93 -0.36 0.71 16 48 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 51 H 0.07 1.01 7.85 -51.93 -0.41 0.61 16 52 H 0.07 1.11 7.65 -51.93 -0.40 0.71 16 LS Contribution 407.53 15.07 6.14 6.14 Total: -1.00 -32.05 407.53 -8.91 -40.97 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -8.72 Total: 9.17 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -1.48 Total: -1.48 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: 0.07 Total: -60.84 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.14 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.05 -8.91 -40.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996210080.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.270 kcal (2) G-P(sol) polarization free energy of solvation -32.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds