Wall clock time and date at job start Wed Apr 1 2020 04:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35203 * 126.00280 * 2 1 4 4 C 1.34573 * 107.61485 * 179.97438 * 3 2 1 5 5 C 1.40492 * 108.03932 * 0.09744 * 4 3 2 6 6 N 1.30126 * 108.22928 * 359.87347 * 5 4 3 7 7 C 1.50944 * 123.48058 * 179.68579 * 5 4 3 8 8 C 1.53376 * 108.21044 * 343.39549 * 7 5 4 9 9 C 1.53028 * 109.74040 * 50.65218 * 8 7 5 10 10 C 1.50881 * 128.32132 * 180.13578 * 4 3 2 11 11 H 1.08995 * 109.71652 * 283.15109 * 10 4 3 12 12 C 1.50692 * 109.72100 * 43.76144 * 10 4 3 13 13 O 1.21283 * 120.00311 * 34.93625 * 12 10 4 14 14 N 1.34782 * 119.99944 * 214.93659 * 12 10 4 15 15 C 1.48141 * 127.83816 * 354.91495 * 14 12 10 16 16 C 1.54390 * 104.62020 * 140.41652 * 15 14 12 17 17 H 1.08998 * 110.43030 * 264.94904 * 16 15 14 18 18 N 1.46495 * 110.34444 * 142.73682 * 16 15 14 19 19 C 1.36935 * 120.00442 * 89.46214 * 18 16 15 20 20 H 1.08004 * 119.99617 * 0.02562 * 19 18 16 21 21 C 1.38811 * 120.00285 * 179.97438 * 19 18 16 22 22 N 1.31614 * 119.99985 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99940 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47257 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47236 * 120.00059 * 23 21 19 26 26 H 1.48498 * 109.47346 * 240.00362 * 23 21 19 27 27 C 1.54286 * 104.95659 * 23.86243 * 16 15 14 28 28 C 1.53005 * 110.33906 * 118.87515 * 27 16 15 29 29 C 1.52998 * 110.34421 * 241.02281 * 27 16 15 30 30 C 1.48316 * 127.76905 * 174.84098 * 14 12 10 31 31 H 1.09000 * 109.47094 * 89.99647 * 1 2 3 32 32 H 1.09004 * 109.46765 * 209.99503 * 1 2 3 33 33 H 1.08998 * 109.47213 * 329.99468 * 1 2 3 34 34 H 1.08000 * 126.18916 * 359.93443 * 3 2 1 35 35 H 1.09003 * 109.71862 * 103.08078 * 7 5 4 36 36 H 1.09007 * 109.71073 * 223.67288 * 7 5 4 37 37 H 1.08998 * 109.42145 * 170.73215 * 8 7 5 38 38 H 1.09000 * 109.42411 * 290.62509 * 8 7 5 39 39 H 1.09002 * 109.42818 * 168.19636 * 9 8 7 40 40 H 1.09000 * 109.43292 * 48.34865 * 9 8 7 41 41 H 1.09000 * 110.40984 * 21.63239 * 15 14 12 42 42 H 1.08996 * 110.40527 * 259.19757 * 15 14 12 43 43 H 0.97003 * 119.99584 * 269.46094 * 18 16 15 44 44 H 0.97001 * 120.00222 * 180.02562 * 22 21 19 45 45 H 1.09003 * 109.46904 * 181.47252 * 28 27 16 46 46 H 1.08994 * 109.47427 * 61.47179 * 28 27 16 47 47 H 1.08998 * 109.47371 * 301.46986 * 28 27 16 48 48 H 1.09003 * 109.47415 * 298.53062 * 29 27 16 49 49 H 1.09002 * 109.47104 * 58.53085 * 29 27 16 50 50 H 1.09005 * 109.47050 * 178.52971 * 29 27 16 51 51 H 1.08998 * 110.38359 * 100.78913 * 30 14 12 52 52 H 1.09005 * 110.50627 * 338.31142 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2598 1.0938 0.0000 4 6 3.5368 0.6693 0.0006 5 6 3.5282 -0.7356 -0.0013 6 7 2.2898 -1.1352 -0.0003 7 6 4.7821 -1.5760 -0.0082 8 6 5.9556 -0.6824 -0.4287 9 6 5.9645 0.5919 0.4185 10 6 4.7980 1.4974 0.0036 11 1 4.9783 1.8964 -0.9945 12 6 4.6596 2.6310 0.9869 13 8 4.0389 2.4687 2.0161 14 7 5.2257 3.8252 0.7225 15 6 6.1004 4.1838 -0.4181 16 6 5.6497 5.6036 -0.8236 17 1 4.9226 5.5550 -1.6342 18 7 6.8052 6.4097 -1.2248 19 6 7.2163 6.4146 -2.5310 20 1 6.6883 5.8246 -3.2655 21 6 8.3109 7.1788 -2.9113 22 7 8.9541 7.8983 -2.0163 23 14 8.8712 7.1861 -4.6933 24 1 7.9868 6.3017 -5.4938 25 1 8.8021 8.5696 -5.2282 26 1 10.2696 6.6932 -4.7746 27 6 4.9994 6.1926 0.4455 28 6 5.7580 7.4407 0.9015 29 6 3.5306 6.5306 0.1827 30 6 5.1119 5.0782 1.5079 31 1 -0.3633 0.0001 -1.0277 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3633 0.8899 0.5139 34 1 1.9295 2.1220 -0.0010 35 1 4.9629 -1.9750 0.9899 36 1 4.6711 -2.3962 -0.7175 37 1 6.8918 -1.2212 -0.2829 38 1 5.8502 -0.4167 -1.4806 39 1 6.9055 1.1210 0.2679 40 1 5.8622 0.3282 1.4712 41 1 5.9526 3.4878 -1.2438 42 1 7.1453 4.1908 -0.1081 43 1 7.2792 6.9399 -0.5652 44 1 9.7188 8.4326 -2.2821 45 1 5.3032 7.8297 1.8126 46 1 5.7124 8.1993 0.1202 47 1 6.7988 7.1823 1.0967 48 1 3.4657 7.2814 -0.6048 49 1 3.0007 5.6305 -0.1289 50 1 3.0787 6.9208 1.0948 51 1 6.0020 5.2248 2.1199 52 1 4.2192 5.0573 2.1330 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996210080.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:42 Heat of formation + Delta-G solvation = 38.912908 kcal Electronic energy + Delta-G solvation = -31860.763409 eV Core-core repulsion = 27861.322681 eV Total energy + Delta-G solvation = -3999.440728 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.58063 -41.17984 -39.39726 -37.39530 -35.79333 -34.60778 -33.65038 -32.77086 -32.57799 -29.84416 -29.11568 -28.24431 -28.15826 -27.28127 -25.66721 -24.52661 -23.18524 -22.84642 -22.05480 -20.26258 -19.89915 -19.59371 -19.13848 -18.10184 -17.58527 -16.94093 -16.64744 -16.25668 -16.19962 -15.75610 -15.64210 -15.54312 -15.32153 -14.98364 -14.81376 -14.45287 -14.20491 -13.91838 -13.87251 -13.71764 -13.55942 -13.35923 -13.25198 -13.18845 -12.97937 -12.82708 -12.76371 -12.66105 -12.44974 -12.22325 -12.05345 -12.03023 -11.96624 -11.84126 -11.72164 -11.44478 -11.33660 -11.27928 -10.92241 -10.68532 -10.20687 -9.70592 -9.28362 -8.93992 -7.88520 -5.16142 0.90190 1.52113 1.53951 1.55185 1.62343 1.64530 1.68444 2.09786 2.61698 3.31122 3.44265 3.49238 3.75368 3.81099 3.84346 3.89471 3.95954 4.06454 4.13841 4.17450 4.27608 4.32478 4.37048 4.40657 4.44609 4.51365 4.61079 4.63664 4.65211 4.67874 4.70138 4.80171 4.88972 4.89376 4.90836 4.98212 5.04880 5.05247 5.09604 5.15580 5.18904 5.19810 5.24958 5.36675 5.41357 5.46825 5.55045 5.64130 5.69690 6.08851 6.33731 6.62467 6.71799 7.18718 7.42147 8.16055 8.40064 9.34681 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012113 B = 0.003069 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.973025 B = 9120.688730 C =10052.006063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.388 5.388 3 C 0.071 3.929 4 C -0.237 4.237 5 C 0.076 3.924 6 N -0.323 5.323 7 C -0.038 4.038 8 C -0.105 4.105 9 C -0.104 4.104 10 C -0.018 4.018 11 H 0.102 0.898 12 C 0.541 3.459 13 O -0.578 6.578 14 N -0.614 5.614 15 C 0.088 3.912 16 C 0.170 3.830 17 H 0.060 0.940 18 N -0.725 5.725 19 C -0.235 4.235 20 H 0.078 0.922 21 C -0.069 4.069 22 N -0.966 5.966 23 Si 0.963 3.037 24 H -0.265 1.265 25 H -0.300 1.300 26 H -0.297 1.297 27 C -0.081 4.081 28 C -0.122 4.122 29 C -0.124 4.124 30 C 0.119 3.881 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.179 0.821 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.085 0.915 42 H 0.063 0.937 43 H 0.383 0.617 44 H 0.249 0.751 45 H 0.070 0.930 46 H 0.048 0.952 47 H 0.044 0.956 48 H 0.053 0.947 49 H 0.053 0.947 50 H 0.068 0.932 51 H 0.067 0.933 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.241 -14.591 4.609 20.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.170 5.170 3 C -0.074 4.074 4 C -0.249 4.249 5 C -0.091 4.091 6 N -0.144 5.144 7 C -0.077 4.077 8 C -0.143 4.143 9 C -0.142 4.142 10 C -0.040 4.040 11 H 0.120 0.880 12 C 0.331 3.669 13 O -0.458 6.458 14 N -0.347 5.347 15 C -0.038 4.038 16 C 0.059 3.941 17 H 0.078 0.922 18 N -0.367 5.367 19 C -0.367 4.367 20 H 0.096 0.904 21 C -0.262 4.262 22 N -0.617 5.617 23 Si 0.794 3.206 24 H -0.190 1.190 25 H -0.227 1.227 26 H -0.225 1.225 27 C -0.083 4.083 28 C -0.180 4.180 29 C -0.181 4.181 30 C -0.004 4.004 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.123 0.877 34 H 0.196 0.804 35 H 0.107 0.893 36 H 0.114 0.886 37 H 0.119 0.881 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.103 0.897 42 H 0.082 0.918 43 H 0.219 0.781 44 H 0.058 0.942 45 H 0.089 0.911 46 H 0.067 0.933 47 H 0.063 0.937 48 H 0.072 0.928 49 H 0.072 0.928 50 H 0.087 0.913 51 H 0.085 0.915 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.608 -15.801 4.978 22.087 hybrid contribution 1.164 1.472 -0.623 1.977 sum -13.444 -14.329 4.355 20.125 Atomic orbital electron populations 1.22138 0.72053 1.05612 1.04549 1.48770 1.07680 1.02757 1.57793 1.22179 0.90999 0.93838 1.00426 1.19605 0.93673 0.93755 1.17823 1.22750 0.94056 0.93794 0.98541 1.76910 1.01768 1.09257 1.26511 1.20277 0.87415 0.96511 1.03503 1.21533 0.98400 0.94405 0.99913 1.21506 0.96068 0.96239 1.00411 1.19658 0.93947 0.91966 0.98422 0.87972 1.20542 0.77293 0.82152 0.86902 1.90644 1.44261 1.82443 1.28494 1.49100 1.48784 1.09496 1.27276 1.23363 0.93584 0.98766 0.88050 1.21280 0.89104 0.89093 0.94578 0.92158 1.42857 1.32996 1.53623 1.07265 1.19662 1.08689 1.21285 0.87064 0.90397 1.25411 0.99425 1.00479 1.00878 1.69797 1.23381 1.34451 1.34042 0.85216 0.77602 0.76785 0.81009 1.18974 1.22727 1.22479 1.21693 0.96975 0.94853 0.94751 1.21569 0.99085 0.96419 1.00878 1.21732 0.93227 1.01151 1.02013 1.22425 1.01951 0.82229 0.93765 0.89392 0.88894 0.87695 0.80386 0.89327 0.88592 0.88090 0.90828 0.90204 0.92320 0.89675 0.91835 0.78086 0.94213 0.91089 0.93305 0.93656 0.92758 0.92788 0.91268 0.91480 0.90162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.33 11.47 127.77 1.47 2.80 16 2 N -0.39 -9.29 4.02 -369.97 -1.49 -10.78 16 3 C 0.07 1.81 10.70 83.33 0.89 2.70 16 4 C -0.24 -6.33 5.05 -20.10 -0.10 -6.43 16 5 C 0.08 1.98 7.10 43.44 0.31 2.28 16 6 N -0.32 -8.93 12.56 -47.14 -0.59 -9.52 16 7 C -0.04 -0.71 6.31 30.05 0.19 -0.52 16 8 C -0.10 -1.73 5.86 30.73 0.18 -1.55 16 9 C -0.10 -2.25 5.17 30.73 0.16 -2.09 16 10 C -0.02 -0.45 2.57 -12.10 -0.03 -0.48 16 11 H 0.10 2.42 6.42 -2.39 -0.02 2.40 16 12 C 0.54 16.34 6.64 87.65 0.58 16.92 16 13 O -0.58 -21.06 16.47 -3.04 -0.05 -21.11 16 14 N -0.61 -18.05 3.32 -807.54 -2.68 -20.73 16 15 C 0.09 2.74 6.65 86.54 0.58 3.31 16 16 C 0.17 5.93 3.35 45.90 0.15 6.08 16 17 H 0.06 2.15 7.66 -2.39 -0.02 2.13 16 18 N -0.73 -32.48 4.59 -318.66 -1.46 -33.94 16 19 C -0.24 -11.85 9.96 84.03 0.84 -11.01 16 20 H 0.08 3.76 7.83 -2.91 -0.02 3.73 16 21 C -0.07 -3.72 5.50 84.86 0.47 -3.25 16 22 N -0.97 -55.70 13.06 21.65 0.28 -55.42 16 23 Si 0.96 43.71 29.55 68.60 2.03 45.73 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 25 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 26 H -0.30 -13.65 7.11 99.48 0.71 -12.95 16 27 C -0.08 -2.39 1.03 -51.28 -0.05 -2.44 16 28 C -0.12 -3.80 7.11 71.98 0.51 -3.29 16 29 C -0.12 -3.15 8.23 71.98 0.59 -2.56 16 30 C 0.12 3.42 6.14 86.50 0.53 3.95 16 31 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.10 1.02 8.14 -2.39 -0.02 1.01 16 34 H 0.18 3.94 8.06 -2.91 -0.02 3.92 16 35 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 37 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.07 1.20 8.10 -2.39 -0.02 1.18 16 39 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.06 1.42 8.07 -2.39 -0.02 1.40 16 41 H 0.08 2.41 6.43 -2.39 -0.02 2.39 16 42 H 0.06 2.19 8.06 -2.39 -0.02 2.17 16 43 H 0.38 18.43 5.09 -92.71 -0.47 17.96 16 44 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 45 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.05 1.75 7.84 -2.39 -0.02 1.73 16 47 H 0.04 1.56 6.86 -2.39 -0.02 1.54 16 48 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 50 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 51 H 0.07 1.95 7.85 -2.39 -0.02 1.93 16 52 H 0.08 2.25 7.65 -2.38 -0.02 2.23 16 Total: -1.00 -68.77 407.53 3.73 -65.04 By element: Atomic # 1 Polarization: 35.88 SS G_CDS: 0.44 Total: 36.32 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: 7.26 Total: 4.41 kcal Atomic # 7 Polarization: -124.45 SS G_CDS: -5.94 Total: -130.39 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.05 Total: -21.11 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -68.77 3.73 -65.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996210080.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.953 kcal (2) G-P(sol) polarization free energy of solvation -68.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds