Wall clock time and date at job start Wed Apr 1 2020 04:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 110.91408 * 2 1 4 4 C 1.54907 * 111.00131 * 123.90238 * 2 1 3 5 5 N 1.47420 * 104.83524 * 81.06567 * 4 2 1 6 6 C 1.34780 * 125.65180 * 204.09058 * 5 4 2 7 7 O 1.21568 * 119.99748 * 0.02562 * 6 5 4 8 8 C 1.47712 * 120.00018 * 180.02562 * 6 5 4 9 9 N 1.32037 * 126.64730 * 0.02562 * 8 6 5 10 10 N 1.28679 * 110.10461 * 179.85081 * 9 8 6 11 11 H 0.97004 * 124.94351 * 179.71029 * 10 9 8 12 12 C 1.34761 * 110.10092 * 359.71045 * 10 9 8 13 13 C 1.35170 * 107.19258 * 0.35013 * 12 10 9 14 14 C 1.50390 * 126.25166 * 178.45166 * 13 12 10 15 15 C 1.53225 * 108.95859 * 28.40607 * 14 13 12 16 16 C 1.52650 * 109.64588 * 271.14203 * 15 14 13 17 17 C 1.52612 * 110.81320 * 61.53835 * 16 15 14 18 18 C 1.50690 * 127.34325 * 181.10142 * 12 10 9 19 19 C 1.47026 * 108.70428 * 24.12518 * 5 4 2 20 20 C 1.54330 * 107.26840 * 358.94103 * 19 5 4 21 21 H 1.08991 * 110.72004 * 219.44241 * 20 19 5 22 22 N 1.46499 * 110.71556 * 96.16892 * 20 19 5 23 23 C 1.36946 * 119.99920 * 86.45572 * 22 20 19 24 24 H 1.08000 * 119.99914 * 359.97438 * 23 22 20 25 25 C 1.38808 * 120.00049 * 179.97438 * 23 22 20 26 26 N 1.31629 * 120.00102 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 120.00271 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.46861 * 359.97438 * 27 25 23 29 29 H 1.48495 * 109.47533 * 119.99825 * 27 25 23 30 30 H 1.48497 * 109.47266 * 240.00587 * 27 25 23 31 31 H 1.08996 * 109.47442 * 297.55335 * 1 2 3 32 32 H 1.09002 * 109.47243 * 57.55100 * 1 2 3 33 33 H 1.09001 * 109.47331 * 177.55307 * 1 2 3 34 34 H 1.09004 * 109.46972 * 182.44575 * 3 2 1 35 35 H 1.08998 * 109.47042 * 302.44208 * 3 2 1 36 36 H 1.08993 * 109.47294 * 62.44945 * 3 2 1 37 37 H 1.08997 * 110.36783 * 322.22286 * 4 2 1 38 38 H 1.08997 * 110.45914 * 199.94937 * 4 2 1 39 39 H 1.09002 * 109.74354 * 268.47399 * 14 13 12 40 40 H 1.08997 * 109.50587 * 148.19836 * 14 13 12 41 41 H 1.09002 * 109.44104 * 151.08353 * 15 14 13 42 42 H 1.09004 * 109.41119 * 31.17570 * 15 14 13 43 43 H 1.09000 * 109.21015 * 301.18857 * 16 15 14 44 44 H 1.09005 * 109.20951 * 181.88110 * 16 15 14 45 45 H 1.09003 * 109.40930 * 273.51218 * 17 16 15 46 46 H 1.08992 * 109.35352 * 153.69385 * 17 16 15 47 47 H 1.09004 * 109.52798 * 346.48131 * 18 12 10 48 48 H 1.09001 * 109.53051 * 106.68287 * 18 12 10 49 49 H 1.08998 * 109.88351 * 118.35702 * 19 5 4 50 50 H 1.08998 * 109.88379 * 239.52492 * 19 5 4 51 51 H 0.96998 * 120.00239 * 266.45268 * 22 20 19 52 52 H 0.96997 * 119.99978 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0852 -0.8066 1.2003 5 7 2.0139 -2.2159 0.7734 6 6 1.9471 -3.2829 1.5941 7 8 1.9417 -3.1234 2.7992 8 6 1.8803 -4.6461 1.0292 9 7 1.8782 -4.9695 -0.2510 10 7 1.8140 -6.2478 -0.3842 11 1 1.7954 -6.7177 -1.2326 12 6 1.7764 -6.8383 0.8266 13 6 1.8127 -5.8541 1.7524 14 6 1.7584 -6.0343 3.2445 15 6 2.3518 -7.4008 3.6028 16 6 1.2534 -8.4604 3.5756 17 6 0.6463 -8.5765 2.1802 18 6 1.7225 -8.3149 1.1221 19 6 2.0285 -2.2647 -0.6960 20 6 2.0861 -0.8079 -1.2022 21 1 1.4524 -0.6792 -2.0796 22 7 3.4666 -0.4157 -1.4961 23 6 4.0066 -0.6806 -2.7265 24 1 3.4148 -1.1791 -3.4799 25 6 5.3145 -0.3085 -3.0051 26 7 6.0360 0.2986 -2.0867 27 14 6.0508 -0.6692 -4.6835 28 1 5.0414 -1.3549 -5.5298 29 1 6.4567 0.6044 -5.3302 30 1 7.2397 -1.5447 -4.5247 31 1 -0.3634 0.4753 0.9111 32 1 -0.3634 0.5514 -0.8672 33 1 -0.3634 -1.0267 -0.0439 34 1 3.1650 1.4020 -0.0439 35 1 1.6909 1.9653 -0.8673 36 1 1.7619 1.9382 0.9111 37 1 1.4672 -0.6461 2.0836 38 1 3.1179 -0.5239 1.4043 39 1 0.7236 -5.9860 3.5838 40 1 2.3376 -5.2473 3.7274 41 1 2.7885 -7.3563 4.6005 42 1 3.1249 -7.6609 2.8797 43 1 0.4725 -8.1859 4.2848 44 1 1.6763 -9.4229 3.8638 45 1 -0.1541 -7.8446 2.0714 46 1 0.2412 -9.5792 2.0448 47 1 1.4773 -8.8602 0.2107 48 1 2.6906 -8.6470 1.4972 49 1 2.9063 -2.8117 -1.0400 50 1 1.1218 -2.7480 -1.0599 51 1 3.9983 0.0318 -0.8193 52 1 6.9500 0.5583 -2.2813 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996612517.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:44 Heat of formation + Delta-G solvation = 42.775220 kcal Electronic energy + Delta-G solvation = -31927.619948 eV Core-core repulsion = 27928.346703 eV Total energy + Delta-G solvation = -3999.273245 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.80276 -39.71587 -37.74868 -37.64880 -33.87405 -33.21758 -32.85225 -31.12027 -30.69516 -30.43362 -27.84422 -26.68338 -26.44612 -25.62532 -24.54481 -23.93186 -23.03441 -21.28304 -19.95972 -19.71274 -18.89534 -18.53539 -17.65428 -17.17696 -16.40895 -16.11060 -15.50928 -15.26613 -14.84697 -14.79622 -14.60827 -14.06050 -13.81920 -13.53070 -13.48354 -13.42900 -13.30532 -12.83834 -12.61106 -12.43669 -12.32195 -12.01608 -11.89219 -11.78308 -11.57874 -11.40173 -11.36796 -11.31616 -10.96122 -10.92682 -10.89411 -10.64258 -10.51482 -10.42715 -10.26388 -10.16159 -9.79319 -9.66180 -9.56490 -9.23143 -8.94339 -8.62693 -8.07270 -6.99374 -5.79158 -3.08097 1.76473 2.12385 2.84567 3.41320 3.43755 3.47012 3.49289 3.71971 4.37362 4.48214 4.56092 4.59879 4.64207 4.87334 4.90824 4.96161 5.10997 5.19153 5.19962 5.25029 5.32255 5.39367 5.53676 5.58469 5.66251 5.71524 5.75131 5.84368 5.86958 5.88569 5.89454 5.98509 5.99710 6.03212 6.05192 6.21795 6.23208 6.27100 6.29613 6.31967 6.41492 6.44961 6.49271 6.57477 6.73005 6.78007 6.92909 7.00679 7.05588 7.69352 7.90048 8.02139 8.39096 8.56266 9.50806 10.06605 10.41523 11.43268 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011989 B = 0.003221 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.818263 B = 8691.727261 C =10085.537467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.089 4.089 3 C -0.127 4.127 4 C 0.122 3.878 5 N -0.591 5.591 6 C 0.611 3.389 7 O -0.547 6.547 8 C -0.001 4.001 9 N -0.243 5.243 10 N -0.382 5.382 11 H 0.443 0.557 12 C 0.006 3.994 13 C -0.140 4.140 14 C -0.043 4.043 15 C -0.124 4.124 16 C -0.120 4.120 17 C -0.113 4.113 18 C -0.048 4.048 19 C 0.085 3.915 20 C 0.176 3.824 21 H 0.068 0.932 22 N -0.712 5.712 23 C -0.240 4.240 24 H 0.072 0.928 25 C -0.011 4.011 26 N -0.930 5.930 27 Si 0.905 3.095 28 H -0.280 1.280 29 H -0.292 1.292 30 H -0.293 1.293 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.045 0.955 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.071 0.929 48 H 0.090 0.910 49 H 0.080 0.920 50 H 0.057 0.943 51 H 0.386 0.614 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.712 -15.705 8.190 21.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.091 4.091 3 C -0.185 4.185 4 C 0.000 4.000 5 N -0.322 5.322 6 C 0.398 3.602 7 O -0.425 6.425 8 C -0.161 4.161 9 N -0.079 5.079 10 N -0.095 5.095 11 H 0.287 0.713 12 C -0.119 4.119 13 C -0.150 4.150 14 C -0.081 4.081 15 C -0.162 4.162 16 C -0.157 4.157 17 C -0.151 4.151 18 C -0.087 4.087 19 C -0.041 4.041 20 C 0.064 3.936 21 H 0.086 0.914 22 N -0.354 5.354 23 C -0.371 4.371 24 H 0.090 0.910 25 C -0.207 4.207 26 N -0.578 5.578 27 Si 0.737 3.263 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.220 1.220 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.106 0.894 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.090 0.910 48 H 0.108 0.892 49 H 0.098 0.902 50 H 0.075 0.925 51 H 0.222 0.778 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.612 -15.197 7.641 21.175 hybrid contribution 0.756 -0.751 -0.691 1.270 sum -11.855 -15.947 6.950 21.052 Atomic orbital electron populations 1.21677 0.94045 1.01509 1.01422 1.22005 0.95267 0.96055 0.95751 1.21600 1.02636 0.93586 1.00643 1.22284 1.01130 0.79641 0.96983 1.48221 1.70099 1.05651 1.08274 1.16488 0.77051 0.81571 0.85101 1.90724 1.52759 1.85314 1.13681 1.21684 1.10081 0.94945 0.89405 1.73993 1.18380 0.95203 1.20310 1.43255 1.53609 1.04221 1.08404 0.71329 1.21076 1.08949 0.96489 0.85410 1.19832 1.08342 0.90080 0.96766 1.19964 1.01668 0.97366 0.89136 1.21718 0.98128 0.94554 1.01768 1.21517 0.98552 0.99001 0.96655 1.21511 0.97692 1.01757 0.94188 1.20218 1.01163 0.87666 0.99616 1.23230 1.01564 1.01426 0.77843 1.21264 0.88496 0.89571 0.94234 0.91402 1.42476 1.08314 1.69904 1.14673 1.19262 0.95450 1.31846 0.90503 0.91044 1.24728 0.96859 1.01250 0.97846 1.69668 1.09427 1.45643 1.33056 0.86144 0.78996 0.77381 0.83803 1.20570 1.21890 1.21996 0.92855 0.92390 0.92875 0.90838 0.92297 0.93620 0.91100 0.91145 0.91016 0.89437 0.91627 0.91389 0.91760 0.92155 0.91409 0.91379 0.91033 0.89213 0.90155 0.92486 0.77763 0.93530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 8.61 37.16 0.32 -1.47 16 2 C -0.09 -1.47 0.83 -152.36 -0.13 -1.59 16 3 C -0.13 -2.07 8.35 37.16 0.31 -1.76 16 4 C 0.12 2.15 5.81 -2.53 -0.01 2.14 16 5 N -0.59 -11.03 3.31 -171.68 -0.57 -11.60 16 6 C 0.61 11.70 7.86 -12.39 -0.10 11.60 16 7 O -0.55 -11.23 15.50 5.31 0.08 -11.14 16 8 C 0.00 -0.01 6.97 -82.88 -0.58 -0.59 16 9 N -0.24 -3.84 9.79 33.35 0.33 -3.52 16 10 N -0.38 -4.49 6.83 33.42 0.23 -4.26 16 11 H 0.44 3.57 8.96 -190.31 -1.71 1.87 16 12 C 0.01 0.07 6.38 -82.40 -0.53 -0.45 16 13 C -0.14 -1.98 5.68 -104.84 -0.60 -2.57 16 14 C -0.04 -0.54 5.30 -27.92 -0.15 -0.69 16 15 C -0.12 -1.15 5.54 -26.79 -0.15 -1.30 16 16 C -0.12 -0.86 5.64 -27.11 -0.15 -1.02 16 17 C -0.11 -0.79 5.64 -26.84 -0.15 -0.95 16 18 C -0.05 -0.36 5.55 -27.80 -0.15 -0.51 16 19 C 0.09 1.61 4.90 -3.06 -0.01 1.59 16 20 C 0.18 3.42 2.87 -66.09 -0.19 3.23 16 21 H 0.07 1.31 8.03 -51.93 -0.42 0.89 16 22 N -0.71 -17.08 4.59 -51.65 -0.24 -17.32 16 23 C -0.24 -6.41 9.98 -15.06 -0.15 -6.56 16 24 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 25 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 26 N -0.93 -27.56 13.06 55.49 0.72 -26.83 16 27 Si 0.91 22.09 29.55 -169.99 -5.02 17.06 16 28 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 29 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 30 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.75 7.81 -51.93 -0.41 0.35 16 34 H 0.07 1.40 6.17 -51.93 -0.32 1.08 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 1.18 7.95 -51.93 -0.41 0.77 16 38 H 0.07 1.35 8.04 -51.93 -0.42 0.93 16 39 H 0.07 0.86 7.83 -51.93 -0.41 0.45 16 40 H 0.09 1.29 6.89 -51.93 -0.36 0.93 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.65 5.65 -51.93 -0.29 0.36 16 43 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 44 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.07 0.57 7.80 -51.93 -0.40 0.16 16 46 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.09 0.64 6.35 -51.93 -0.33 0.31 16 49 H 0.08 1.75 7.68 -51.93 -0.40 1.36 16 50 H 0.06 1.01 7.66 -51.93 -0.40 0.61 16 51 H 0.39 9.91 6.02 -40.82 -0.25 9.67 16 52 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 397.56 15.07 5.99 5.99 Total: -1.00 -32.36 397.56 -10.85 -43.21 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -9.86 Total: 9.71 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -2.51 Total: -1.29 kcal Atomic # 7 Polarization: -64.00 SS G_CDS: 0.47 Total: -63.53 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.08 Total: -11.14 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.36 -10.85 -43.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996612517.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.982 kcal (2) G-P(sol) polarization free energy of solvation -32.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds