Wall clock time and date at job start Wed Apr 1 2020 04:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 110.91408 * 2 1 4 4 C 1.54907 * 111.00131 * 123.90238 * 2 1 3 5 5 N 1.47420 * 104.83524 * 81.06567 * 4 2 1 6 6 C 1.34780 * 125.65180 * 204.09058 * 5 4 2 7 7 O 1.21568 * 119.99748 * 0.02562 * 6 5 4 8 8 C 1.47712 * 120.00018 * 180.02562 * 6 5 4 9 9 N 1.32037 * 126.64730 * 0.02562 * 8 6 5 10 10 N 1.28679 * 110.10461 * 179.85081 * 9 8 6 11 11 H 0.97004 * 124.94351 * 179.71029 * 10 9 8 12 12 C 1.34761 * 110.10092 * 359.71045 * 10 9 8 13 13 C 1.35170 * 107.19258 * 0.35013 * 12 10 9 14 14 C 1.50390 * 126.25166 * 178.45166 * 13 12 10 15 15 C 1.53225 * 108.95859 * 28.40607 * 14 13 12 16 16 C 1.52650 * 109.64588 * 271.14203 * 15 14 13 17 17 C 1.52612 * 110.81320 * 61.53835 * 16 15 14 18 18 C 1.50690 * 127.34325 * 181.10142 * 12 10 9 19 19 C 1.47026 * 108.70428 * 24.12518 * 5 4 2 20 20 C 1.54330 * 107.26840 * 358.94103 * 19 5 4 21 21 H 1.08991 * 110.72004 * 219.44241 * 20 19 5 22 22 N 1.46499 * 110.71556 * 96.16892 * 20 19 5 23 23 C 1.36946 * 119.99920 * 86.45572 * 22 20 19 24 24 H 1.08000 * 119.99914 * 359.97438 * 23 22 20 25 25 C 1.38808 * 120.00049 * 179.97438 * 23 22 20 26 26 N 1.31629 * 120.00102 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 120.00271 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.46861 * 359.97438 * 27 25 23 29 29 H 1.48495 * 109.47533 * 119.99825 * 27 25 23 30 30 H 1.48497 * 109.47266 * 240.00587 * 27 25 23 31 31 H 1.08996 * 109.47442 * 297.55335 * 1 2 3 32 32 H 1.09002 * 109.47243 * 57.55100 * 1 2 3 33 33 H 1.09001 * 109.47331 * 177.55307 * 1 2 3 34 34 H 1.09004 * 109.46972 * 182.44575 * 3 2 1 35 35 H 1.08998 * 109.47042 * 302.44208 * 3 2 1 36 36 H 1.08993 * 109.47294 * 62.44945 * 3 2 1 37 37 H 1.08997 * 110.36783 * 322.22286 * 4 2 1 38 38 H 1.08997 * 110.45914 * 199.94937 * 4 2 1 39 39 H 1.09002 * 109.74354 * 268.47399 * 14 13 12 40 40 H 1.08997 * 109.50587 * 148.19836 * 14 13 12 41 41 H 1.09002 * 109.44104 * 151.08353 * 15 14 13 42 42 H 1.09004 * 109.41119 * 31.17570 * 15 14 13 43 43 H 1.09000 * 109.21015 * 301.18857 * 16 15 14 44 44 H 1.09005 * 109.20951 * 181.88110 * 16 15 14 45 45 H 1.09003 * 109.40930 * 273.51218 * 17 16 15 46 46 H 1.08992 * 109.35352 * 153.69385 * 17 16 15 47 47 H 1.09004 * 109.52798 * 346.48131 * 18 12 10 48 48 H 1.09001 * 109.53051 * 106.68287 * 18 12 10 49 49 H 1.08998 * 109.88351 * 118.35702 * 19 5 4 50 50 H 1.08998 * 109.88379 * 239.52492 * 19 5 4 51 51 H 0.96998 * 120.00239 * 266.45268 * 22 20 19 52 52 H 0.96997 * 119.99978 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0852 -0.8066 1.2003 5 7 2.0139 -2.2159 0.7734 6 6 1.9471 -3.2829 1.5941 7 8 1.9417 -3.1234 2.7992 8 6 1.8803 -4.6461 1.0292 9 7 1.8782 -4.9695 -0.2510 10 7 1.8140 -6.2478 -0.3842 11 1 1.7954 -6.7177 -1.2326 12 6 1.7764 -6.8383 0.8266 13 6 1.8127 -5.8541 1.7524 14 6 1.7584 -6.0343 3.2445 15 6 2.3518 -7.4008 3.6028 16 6 1.2534 -8.4604 3.5756 17 6 0.6463 -8.5765 2.1802 18 6 1.7225 -8.3149 1.1221 19 6 2.0285 -2.2647 -0.6960 20 6 2.0861 -0.8079 -1.2022 21 1 1.4524 -0.6792 -2.0796 22 7 3.4666 -0.4157 -1.4961 23 6 4.0066 -0.6806 -2.7265 24 1 3.4148 -1.1791 -3.4799 25 6 5.3145 -0.3085 -3.0051 26 7 6.0360 0.2986 -2.0867 27 14 6.0508 -0.6692 -4.6835 28 1 5.0414 -1.3549 -5.5298 29 1 6.4567 0.6044 -5.3302 30 1 7.2397 -1.5447 -4.5247 31 1 -0.3634 0.4753 0.9111 32 1 -0.3634 0.5514 -0.8672 33 1 -0.3634 -1.0267 -0.0439 34 1 3.1650 1.4020 -0.0439 35 1 1.6909 1.9653 -0.8673 36 1 1.7619 1.9382 0.9111 37 1 1.4672 -0.6461 2.0836 38 1 3.1179 -0.5239 1.4043 39 1 0.7236 -5.9860 3.5838 40 1 2.3376 -5.2473 3.7274 41 1 2.7885 -7.3563 4.6005 42 1 3.1249 -7.6609 2.8797 43 1 0.4725 -8.1859 4.2848 44 1 1.6763 -9.4229 3.8638 45 1 -0.1541 -7.8446 2.0714 46 1 0.2412 -9.5792 2.0448 47 1 1.4773 -8.8602 0.2107 48 1 2.6906 -8.6470 1.4972 49 1 2.9063 -2.8117 -1.0400 50 1 1.1218 -2.7480 -1.0599 51 1 3.9983 0.0318 -0.8193 52 1 6.9500 0.5583 -2.2813 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996612517.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:43 Heat of formation + Delta-G solvation = 22.705637 kcal Electronic energy + Delta-G solvation = -31928.490230 eV Core-core repulsion = 27928.346703 eV Total energy + Delta-G solvation = -4000.143528 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.86695 -41.20776 -39.19663 -38.45719 -35.74045 -34.67355 -33.86373 -32.60976 -31.99457 -31.38683 -29.46100 -28.06008 -27.83623 -26.44328 -25.76996 -25.33161 -24.43666 -22.84961 -20.84613 -20.47772 -20.38011 -19.89349 -19.11011 -18.67912 -17.69361 -17.38247 -16.96381 -16.42741 -16.34479 -15.93856 -15.76373 -15.51006 -15.41857 -14.85986 -14.65281 -14.33453 -14.29466 -14.18205 -14.04088 -13.73875 -13.43920 -13.27926 -13.24698 -13.06877 -12.85792 -12.78941 -12.69108 -12.62619 -12.26001 -12.15749 -12.08610 -12.01806 -11.85223 -11.62456 -11.45015 -11.40494 -11.31295 -11.22699 -11.02000 -10.87439 -10.37433 -9.70109 -9.54228 -9.00531 -7.92458 -5.20602 0.50849 1.09440 1.47304 1.47566 1.57377 1.79843 2.15390 2.32044 2.56473 3.25763 3.38771 3.52626 3.64441 3.81288 3.85738 3.90976 4.00778 4.03717 4.08213 4.21815 4.24096 4.33398 4.40289 4.49223 4.53874 4.59344 4.65904 4.67087 4.79547 4.88073 4.88732 4.94180 4.96121 5.02202 5.03979 5.08117 5.10903 5.12858 5.15607 5.29285 5.31058 5.33939 5.36284 5.39253 5.44313 5.49520 5.54268 5.59994 5.61432 6.14224 6.28898 6.48275 6.81275 7.11294 7.36063 8.09712 8.33876 9.31041 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011989 B = 0.003221 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.818263 B = 8691.727261 C =10085.537467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.075 4.075 3 C -0.121 4.121 4 C 0.121 3.879 5 N -0.595 5.595 6 C 0.603 3.397 7 O -0.570 6.570 8 C -0.036 4.036 9 N -0.267 5.267 10 N -0.365 5.365 11 H 0.459 0.541 12 C 0.031 3.969 13 C -0.163 4.163 14 C -0.040 4.040 15 C -0.119 4.119 16 C -0.117 4.117 17 C -0.111 4.111 18 C -0.047 4.047 19 C 0.105 3.895 20 C 0.169 3.831 21 H 0.076 0.924 22 N -0.722 5.722 23 C -0.232 4.232 24 H 0.079 0.921 25 C -0.074 4.074 26 N -0.969 5.969 27 Si 0.968 3.032 28 H -0.264 1.264 29 H -0.295 1.295 30 H -0.300 1.300 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.049 0.951 34 H 0.039 0.961 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.046 0.954 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.081 0.919 45 H 0.051 0.949 46 H 0.095 0.905 47 H 0.102 0.898 48 H 0.101 0.899 49 H 0.048 0.952 50 H 0.072 0.928 51 H 0.375 0.625 52 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.709 -18.306 7.468 24.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.077 4.077 3 C -0.179 4.179 4 C -0.001 4.001 5 N -0.326 5.326 6 C 0.391 3.609 7 O -0.450 6.450 8 C -0.195 4.195 9 N -0.104 5.104 10 N -0.081 5.081 11 H 0.307 0.693 12 C -0.096 4.096 13 C -0.173 4.173 14 C -0.078 4.078 15 C -0.156 4.156 16 C -0.154 4.154 17 C -0.149 4.149 18 C -0.086 4.086 19 C -0.020 4.020 20 C 0.059 3.941 21 H 0.094 0.906 22 N -0.362 5.362 23 C -0.364 4.364 24 H 0.097 0.903 25 C -0.266 4.266 26 N -0.620 5.620 27 Si 0.798 3.202 28 H -0.188 1.188 29 H -0.222 1.222 30 H -0.228 1.228 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.065 0.935 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.099 0.901 45 H 0.070 0.930 46 H 0.113 0.887 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.066 0.934 50 H 0.090 0.910 51 H 0.209 0.791 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -14.664 -17.818 6.894 24.084 hybrid contribution 1.321 -0.018 -0.421 1.387 sum -13.342 -17.836 6.473 23.196 Atomic orbital electron populations 1.21635 0.91264 1.01878 1.03137 1.21964 0.97177 0.95332 0.93222 1.21528 1.00383 0.93792 1.02147 1.22307 1.00110 0.79606 0.98123 1.48296 1.70157 1.06028 1.08117 1.16923 0.76406 0.82552 0.84973 1.90691 1.53813 1.85899 1.14557 1.21592 1.12640 0.94682 0.90579 1.73880 1.19467 0.97217 1.19867 1.43354 1.51799 1.03253 1.09654 0.69274 1.21629 1.05790 0.98014 0.84196 1.20132 1.09425 0.89819 0.97923 1.19919 1.01273 0.98412 0.88196 1.21692 0.98793 0.93254 1.01897 1.21507 0.97791 0.98982 0.97121 1.21517 0.96954 1.02804 0.93628 1.20449 1.02078 0.84688 1.01367 1.22877 1.00713 1.00412 0.78043 1.21487 0.86463 0.90356 0.95829 0.90599 1.42616 1.10005 1.69875 1.13667 1.19640 0.95442 1.29963 0.91369 0.90328 1.25487 0.97639 1.02288 1.01196 1.69830 1.09387 1.47751 1.34987 0.85142 0.78049 0.76813 0.80186 1.18786 1.22199 1.22794 0.90955 0.90908 0.93151 0.94179 0.91982 0.90953 0.89989 0.93524 0.91099 0.92717 0.91188 0.91452 0.91727 0.90050 0.93002 0.88674 0.87954 0.88085 0.93387 0.90967 0.79055 0.94255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.11 8.61 71.98 0.62 -2.49 16 2 C -0.08 -2.45 0.83 -50.79 -0.04 -2.49 16 3 C -0.12 -3.91 8.35 71.98 0.60 -3.31 16 4 C 0.12 4.36 5.81 86.86 0.50 4.87 16 5 N -0.59 -22.90 3.31 -815.35 -2.70 -25.60 16 6 C 0.60 24.07 7.86 86.75 0.68 24.75 16 7 O -0.57 -24.58 15.50 -3.93 -0.06 -24.64 16 8 C -0.04 -1.27 6.97 42.28 0.29 -0.97 16 9 N -0.27 -8.44 9.79 -48.41 -0.47 -8.91 16 10 N -0.36 -8.04 6.83 -48.19 -0.33 -8.37 16 11 H 0.46 6.35 8.96 -219.88 -1.97 4.38 16 12 C 0.03 0.64 6.38 41.40 0.26 0.90 16 13 C -0.16 -4.60 5.68 -20.00 -0.11 -4.71 16 14 C -0.04 -1.01 5.30 29.83 0.16 -0.85 16 15 C -0.12 -2.05 5.54 30.55 0.17 -1.88 16 16 C -0.12 -1.35 5.64 30.35 0.17 -1.18 16 17 C -0.11 -1.17 5.64 30.52 0.17 -1.00 16 18 C -0.05 -0.53 5.55 29.90 0.17 -0.37 16 19 C 0.11 4.04 4.90 86.73 0.42 4.46 16 20 C 0.17 6.58 2.87 46.18 0.13 6.71 16 21 H 0.08 2.85 8.03 -2.39 -0.02 2.84 16 22 N -0.72 -35.49 4.59 -317.33 -1.46 -36.94 16 23 C -0.23 -12.57 9.98 84.03 0.84 -11.73 16 24 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 25 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 26 N -0.97 -59.30 13.06 21.65 0.28 -59.02 16 27 Si 0.97 46.02 29.55 68.60 2.03 48.04 16 28 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 29 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 30 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 31 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.05 1.33 7.81 -2.39 -0.02 1.31 16 34 H 0.04 1.57 6.17 -2.38 -0.01 1.56 16 35 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.08 2.76 7.95 -2.39 -0.02 2.74 16 38 H 0.05 1.89 8.04 -2.39 -0.02 1.87 16 39 H 0.07 1.74 7.83 -2.39 -0.02 1.72 16 40 H 0.05 1.72 6.89 -2.39 -0.02 1.71 16 41 H 0.07 1.13 8.14 -2.39 -0.02 1.12 16 42 H 0.07 1.17 5.65 -2.38 -0.01 1.15 16 43 H 0.06 0.77 8.09 -2.39 -0.02 0.75 16 44 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 45 H 0.05 0.74 7.80 -2.39 -0.02 0.72 16 46 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 48 H 0.10 1.03 6.35 -2.39 -0.02 1.01 16 49 H 0.05 2.16 7.68 -2.39 -0.02 2.14 16 50 H 0.07 2.54 7.66 -2.39 -0.02 2.52 16 51 H 0.38 20.13 6.02 -92.71 -0.56 19.57 16 52 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -73.65 397.56 1.21 -72.44 By element: Atomic # 1 Polarization: 37.61 SS G_CDS: -1.59 Total: 36.03 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 5.51 Total: 6.96 kcal Atomic # 7 Polarization: -134.15 SS G_CDS: -4.68 Total: -138.83 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.06 Total: -24.64 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.04 kcal Total: -73.65 1.21 -72.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996612517.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.149 kcal (2) G-P(sol) polarization free energy of solvation -73.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds