Wall clock time and date at job start Wed Apr 1 2020 04:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46893 * 110.99791 * 2 1 4 4 C 1.46900 * 110.99836 * 123.95301 * 2 1 3 5 5 H 1.08996 * 109.47204 * 294.75729 * 4 2 1 6 6 C 1.50702 * 109.46781 * 174.75745 * 4 2 1 7 7 O 1.21279 * 120.00044 * 331.88801 * 6 4 2 8 8 N 1.34775 * 119.99703 * 151.89328 * 6 4 2 9 9 C 1.47016 * 125.64806 * 0.02584 * 8 6 4 10 10 C 1.54335 * 107.27111 * 181.02249 * 9 8 6 11 11 H 1.08999 * 110.72055 * 140.73070 * 10 9 8 12 12 N 1.46498 * 110.71955 * 263.82773 * 10 9 8 13 13 C 1.36934 * 120.00170 * 273.54893 * 12 10 9 14 14 H 1.08000 * 120.00038 * 359.97438 * 13 12 10 15 15 C 1.38813 * 120.00082 * 180.02562 * 13 12 10 16 16 N 1.31619 * 119.99929 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99987 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47022 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47216 * 119.99563 * 17 15 13 20 20 H 1.48493 * 109.46761 * 239.99303 * 17 15 13 21 21 C 1.55151 * 102.93951 * 22.19146 * 10 9 8 22 22 C 1.52999 * 111.00620 * 82.57132 * 21 10 9 23 23 C 1.52998 * 111.00455 * 206.38906 * 21 10 9 24 24 C 1.47421 * 125.64785 * 179.71353 * 8 6 4 25 25 C 1.50700 * 109.46936 * 54.76138 * 4 2 1 26 26 C 1.38669 * 120.41533 * 227.24708 * 25 4 2 27 27 C 1.38637 * 118.42117 * 179.97438 * 26 25 4 28 28 C 1.38218 * 119.15814 * 359.97438 * 27 26 25 29 29 N 1.31856 * 120.76991 * 0.02562 * 28 27 26 30 30 C 1.31888 * 121.71876 * 359.97438 * 29 28 27 31 31 H 1.08994 * 109.46887 * 296.04894 * 1 2 3 32 32 H 1.09005 * 109.46769 * 56.04805 * 1 2 3 33 33 H 1.09001 * 109.47019 * 176.04051 * 1 2 3 34 34 H 1.09004 * 109.47392 * 181.43354 * 3 2 1 35 35 H 1.09003 * 109.47600 * 301.42797 * 3 2 1 36 36 H 1.08999 * 109.47596 * 61.43464 * 3 2 1 37 37 H 1.09001 * 109.88334 * 300.43786 * 9 8 6 38 38 H 1.08995 * 109.88445 * 61.45285 * 9 8 6 39 39 H 0.97003 * 120.00081 * 93.54387 * 12 10 9 40 40 H 0.97000 * 120.00223 * 180.02562 * 16 15 13 41 41 H 1.08999 * 109.46886 * 60.00362 * 22 21 10 42 42 H 1.09003 * 109.47317 * 179.97438 * 22 21 10 43 43 H 1.08993 * 109.47667 * 299.99785 * 22 21 10 44 44 H 1.09000 * 109.47229 * 59.99889 * 23 21 10 45 45 H 1.09003 * 109.47594 * 180.02562 * 23 21 10 46 46 H 1.09001 * 109.46998 * 299.99939 * 23 21 10 47 47 H 1.09002 * 110.37276 * 274.75071 * 24 8 6 48 48 H 1.09005 * 110.36891 * 37.07167 * 24 8 6 49 49 H 1.08004 * 120.79157 * 359.70839 * 26 25 4 50 50 H 1.07994 * 120.41864 * 179.97438 * 27 26 25 51 51 H 1.08005 * 119.61818 * 180.02562 * 28 27 26 52 52 H 1.08007 * 119.61139 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 1 1.7239 -0.2675 2.0681 6 6 3.4964 -0.8524 1.0335 7 8 4.0322 -0.8114 -0.0538 8 7 4.2433 -0.9752 2.1486 9 6 3.7263 -1.0377 3.5235 10 6 4.9432 -1.1514 4.4659 11 1 4.7922 -0.5534 5.3646 12 7 5.2003 -2.5510 4.8139 13 6 4.5473 -3.1245 5.8722 14 1 3.8432 -2.5448 6.4506 15 6 4.7913 -4.4505 6.2023 16 7 5.6498 -5.1568 5.4978 17 14 3.9011 -5.2325 7.6464 18 1 2.9963 -4.2335 8.2699 19 1 3.1052 -6.3915 7.1685 20 1 4.8944 -5.6939 8.6491 21 6 6.1017 -0.5773 3.6081 22 6 6.1243 0.9512 3.6697 23 6 7.4475 -1.1608 4.0432 24 6 5.7134 -1.0758 2.1913 25 6 1.4101 -2.1545 1.1221 26 6 0.8879 -2.7092 2.2808 27 6 0.3593 -3.9894 2.2194 28 6 0.3698 -4.6652 1.0138 29 7 0.8749 -4.1064 -0.0684 30 6 1.3860 -2.8907 -0.0470 31 1 -0.3633 0.4513 0.9232 32 1 -0.3633 0.5740 -0.8525 33 1 -0.3633 -1.0252 -0.0710 34 1 3.0848 1.3425 -0.0257 35 1 1.6254 1.9027 -0.8769 36 1 1.6669 1.8867 0.9025 37 1 3.1654 -0.1310 3.7502 38 1 3.0829 -1.9099 3.6384 39 1 5.8329 -3.0717 4.2946 40 1 5.8200 -6.0836 5.7282 41 1 6.2625 1.2712 4.7025 42 1 6.9461 1.3273 3.0602 43 1 5.1810 1.3442 3.2906 44 1 7.4289 -2.2443 3.9252 45 1 8.2420 -0.7413 3.4261 46 1 7.6303 -0.9123 5.0886 47 1 6.0272 -2.1102 2.0513 48 1 6.1597 -0.4367 1.4293 49 1 0.8966 -2.1587 3.2100 50 1 -0.0555 -4.4526 3.1024 51 1 -0.0404 -5.6627 0.9574 52 1 1.7904 -2.4657 -0.9538 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996694108.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:46 Heat of formation + Delta-G solvation = 34.398449 kcal Electronic energy + Delta-G solvation = -32767.243040 eV Core-core repulsion = 28767.606551 eV Total energy + Delta-G solvation = -3999.636489 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.80078 -39.66954 -38.32496 -36.61325 -34.00844 -33.38291 -32.60195 -31.54807 -30.82139 -28.40225 -28.00449 -27.45726 -26.74961 -25.85857 -23.91030 -23.55589 -23.01452 -22.03023 -21.28401 -19.03860 -18.63399 -17.36300 -17.16609 -16.96750 -16.25000 -16.08268 -15.62049 -15.25637 -14.86048 -14.61676 -14.32074 -14.18645 -13.96467 -13.67588 -13.62379 -13.47244 -13.02896 -12.92506 -12.87495 -12.53349 -12.49289 -12.43064 -12.19738 -12.04147 -11.86359 -11.79870 -11.62831 -11.52410 -11.34176 -11.05371 -10.97940 -10.62886 -10.52138 -10.26991 -10.00836 -9.86945 -9.71406 -9.54116 -9.38571 -9.07578 -8.81060 -8.49069 -8.25989 -7.11775 -5.89088 -3.19351 1.11677 1.37007 2.82443 3.08404 3.33893 3.39313 3.42557 3.75581 4.01818 4.45149 4.46153 4.61537 4.77849 4.80736 4.96973 4.98172 5.03818 5.05283 5.08116 5.19220 5.20825 5.32266 5.39409 5.41508 5.46023 5.55930 5.59326 5.61730 5.69550 5.73700 5.84790 5.85521 5.89633 5.91296 6.06180 6.15428 6.16493 6.17863 6.22489 6.25123 6.29839 6.34723 6.51502 6.57108 6.70137 6.72019 6.81156 6.83478 6.87567 7.57816 7.83790 8.06614 8.28255 8.42262 9.40482 9.95214 10.29960 11.32933 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008948 B = 0.004807 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3128.335499 B = 5823.169759 C = 7975.914443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.521 5.521 3 C 0.023 3.977 4 C 0.121 3.879 5 H 0.067 0.933 6 C 0.535 3.465 7 O -0.529 6.529 8 N -0.602 5.602 9 C 0.069 3.931 10 C 0.180 3.820 11 H 0.070 0.930 12 N -0.711 5.711 13 C -0.247 4.247 14 H 0.071 0.929 15 C -0.006 4.006 16 N -0.926 5.926 17 Si 0.904 3.096 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 C -0.088 4.088 22 C -0.128 4.128 23 C -0.125 4.125 24 C 0.122 3.878 25 C -0.135 4.135 26 C -0.058 4.058 27 C -0.168 4.168 28 C 0.100 3.900 29 N -0.488 5.488 30 C 0.133 3.867 31 H 0.026 0.974 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.024 0.976 37 H 0.050 0.950 38 H 0.076 0.924 39 H 0.387 0.613 40 H 0.256 0.744 41 H 0.058 0.942 42 H 0.053 0.947 43 H 0.051 0.949 44 H 0.069 0.931 45 H 0.045 0.955 46 H 0.060 0.940 47 H 0.069 0.931 48 H 0.070 0.930 49 H 0.134 0.866 50 H 0.137 0.863 51 H 0.154 0.846 52 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.356 11.828 -6.474 15.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.245 5.245 3 C -0.125 4.125 4 C 0.009 3.991 5 H 0.085 0.915 6 C 0.321 3.679 7 O -0.405 6.405 8 N -0.335 5.335 9 C -0.057 4.057 10 C 0.068 3.932 11 H 0.087 0.913 12 N -0.352 5.352 13 C -0.378 4.378 14 H 0.089 0.911 15 C -0.202 4.202 16 N -0.574 5.574 17 Si 0.735 3.265 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.218 1.218 21 C -0.090 4.090 22 C -0.186 4.186 23 C -0.183 4.183 24 C 0.000 4.000 25 C -0.138 4.138 26 C -0.084 4.084 27 C -0.188 4.188 28 C -0.057 4.057 29 N -0.197 5.197 30 C -0.024 4.024 31 H 0.045 0.955 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.042 0.958 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.223 0.777 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.064 0.936 46 H 0.079 0.921 47 H 0.087 0.913 48 H 0.088 0.912 49 H 0.152 0.848 50 H 0.155 0.845 51 H 0.172 0.828 52 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -8.052 11.086 -8.180 15.958 hybrid contribution -0.655 0.062 2.387 2.476 sum -8.708 11.148 -5.793 15.286 Atomic orbital electron populations 1.22426 0.86563 1.02645 1.00611 1.61694 1.07805 1.14001 1.41046 1.22445 1.01850 0.87680 1.00476 1.20327 0.92437 0.92319 0.94001 0.91535 1.19709 0.87768 0.77069 0.83315 1.90678 1.73231 1.50196 1.26425 1.48391 1.07636 1.71087 1.06433 1.23346 1.00533 1.00304 0.81564 1.21202 0.89811 0.88387 0.93850 0.91268 1.42456 1.50843 1.06160 1.35741 1.19220 1.18703 0.94122 1.05728 0.91074 1.24729 0.99503 0.96755 0.99263 1.69660 1.37458 1.08998 1.41259 0.86180 0.78914 0.79261 0.82151 1.20531 1.21836 1.21797 1.22040 0.97020 0.95342 0.94604 1.21667 1.01300 0.93966 1.01666 1.21574 0.93813 1.01880 1.01018 1.22312 0.79662 1.01145 0.96889 1.20283 1.01951 0.95983 0.95536 1.21504 0.93981 0.95417 0.97527 1.22105 1.01593 0.95393 0.99724 1.22821 0.94958 0.99554 0.88328 1.67798 1.09736 1.11205 1.30928 1.22720 0.93116 0.88855 0.97705 0.95527 0.90843 0.91167 0.90543 0.90823 0.95758 0.93165 0.90524 0.77713 0.93385 0.92306 0.92763 0.93010 0.91202 0.93584 0.92073 0.91276 0.91163 0.84784 0.84505 0.82833 0.82026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.16 60.07 0.55 0.81 16 2 N -0.52 -6.61 4.18 -246.00 -1.03 -7.64 16 3 C 0.02 0.26 9.27 60.06 0.56 0.82 16 4 C 0.12 1.69 1.65 -70.02 -0.12 1.58 16 5 H 0.07 0.86 6.97 -51.93 -0.36 0.49 16 6 C 0.53 8.96 5.87 -10.98 -0.06 8.89 16 7 O -0.53 -10.27 15.95 5.56 0.09 -10.18 16 8 N -0.60 -9.90 3.31 -170.38 -0.56 -10.46 16 9 C 0.07 1.11 5.60 -3.06 -0.02 1.09 16 10 C 0.18 3.15 2.86 -66.09 -0.19 2.97 16 11 H 0.07 1.20 8.03 -51.93 -0.42 0.78 16 12 N -0.71 -15.94 4.61 -51.65 -0.24 -16.17 16 13 C -0.25 -6.21 9.98 -15.06 -0.15 -6.36 16 14 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 15 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 16 N -0.93 -26.52 13.06 55.49 0.72 -25.79 16 17 Si 0.90 21.10 29.55 -169.99 -5.02 16.07 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 C -0.09 -1.33 0.83 -152.24 -0.13 -1.46 16 22 C -0.13 -1.59 8.59 37.16 0.32 -1.27 16 23 C -0.13 -1.93 8.22 37.16 0.31 -1.62 16 24 C 0.12 2.01 5.82 -2.41 -0.01 1.99 16 25 C -0.13 -1.96 3.54 -104.48 -0.37 -2.33 16 26 C -0.06 -0.79 9.09 -39.27 -0.36 -1.15 16 27 C -0.17 -2.22 10.11 -39.44 -0.40 -2.62 16 28 C 0.10 1.37 11.18 -17.55 -0.20 1.17 16 29 N -0.49 -7.69 10.36 -13.25 -0.14 -7.83 16 30 C 0.13 2.08 9.55 -17.55 -0.17 1.91 16 31 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.78 6.33 -51.93 -0.33 0.45 16 34 H 0.08 1.01 6.44 -51.93 -0.33 0.68 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.05 0.69 7.78 -51.93 -0.40 0.29 16 38 H 0.08 1.39 6.86 -51.93 -0.36 1.03 16 39 H 0.39 9.48 6.10 -40.82 -0.25 9.23 16 40 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.05 0.64 7.91 -51.93 -0.41 0.22 16 44 H 0.07 1.26 6.38 -51.93 -0.33 0.93 16 45 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.07 1.28 7.99 -51.93 -0.41 0.86 16 48 H 0.07 1.11 7.95 -51.93 -0.41 0.70 16 49 H 0.13 1.65 7.62 -52.48 -0.40 1.25 16 50 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 51 H 0.15 1.67 8.06 -52.48 -0.42 1.24 16 52 H 0.16 2.60 7.95 -52.48 -0.42 2.18 16 LS Contribution 410.88 15.07 6.19 6.19 Total: -1.00 -30.49 410.88 -9.13 -39.62 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: -8.61 Total: 12.01 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -0.53 Total: 4.19 kcal Atomic # 7 Polarization: -66.66 SS G_CDS: -1.24 Total: -67.90 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -30.49 -9.13 -39.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996694108.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.017 kcal (2) G-P(sol) polarization free energy of solvation -30.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds