Wall clock time and date at job start Wed Apr 1 2020 04:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46893 * 110.99791 * 2 1 4 4 C 1.46900 * 110.99836 * 123.95301 * 2 1 3 5 5 H 1.08996 * 109.47204 * 294.75729 * 4 2 1 6 6 C 1.50702 * 109.46781 * 174.75745 * 4 2 1 7 7 O 1.21279 * 120.00044 * 331.88801 * 6 4 2 8 8 N 1.34775 * 119.99703 * 151.89328 * 6 4 2 9 9 C 1.47016 * 125.64806 * 0.02584 * 8 6 4 10 10 C 1.54335 * 107.27111 * 181.02249 * 9 8 6 11 11 H 1.08999 * 110.72055 * 140.73070 * 10 9 8 12 12 N 1.46498 * 110.71955 * 263.82773 * 10 9 8 13 13 C 1.36934 * 120.00170 * 273.54893 * 12 10 9 14 14 H 1.08000 * 120.00038 * 359.97438 * 13 12 10 15 15 C 1.38813 * 120.00082 * 180.02562 * 13 12 10 16 16 N 1.31619 * 119.99929 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99987 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47022 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47216 * 119.99563 * 17 15 13 20 20 H 1.48493 * 109.46761 * 239.99303 * 17 15 13 21 21 C 1.55151 * 102.93951 * 22.19146 * 10 9 8 22 22 C 1.52999 * 111.00620 * 82.57132 * 21 10 9 23 23 C 1.52998 * 111.00455 * 206.38906 * 21 10 9 24 24 C 1.47421 * 125.64785 * 179.71353 * 8 6 4 25 25 C 1.50700 * 109.46936 * 54.76138 * 4 2 1 26 26 C 1.38669 * 120.41533 * 227.24708 * 25 4 2 27 27 C 1.38637 * 118.42117 * 179.97438 * 26 25 4 28 28 C 1.38218 * 119.15814 * 359.97438 * 27 26 25 29 29 N 1.31856 * 120.76991 * 0.02562 * 28 27 26 30 30 C 1.31888 * 121.71876 * 359.97438 * 29 28 27 31 31 H 1.08994 * 109.46887 * 296.04894 * 1 2 3 32 32 H 1.09005 * 109.46769 * 56.04805 * 1 2 3 33 33 H 1.09001 * 109.47019 * 176.04051 * 1 2 3 34 34 H 1.09004 * 109.47392 * 181.43354 * 3 2 1 35 35 H 1.09003 * 109.47600 * 301.42797 * 3 2 1 36 36 H 1.08999 * 109.47596 * 61.43464 * 3 2 1 37 37 H 1.09001 * 109.88334 * 300.43786 * 9 8 6 38 38 H 1.08995 * 109.88445 * 61.45285 * 9 8 6 39 39 H 0.97003 * 120.00081 * 93.54387 * 12 10 9 40 40 H 0.97000 * 120.00223 * 180.02562 * 16 15 13 41 41 H 1.08999 * 109.46886 * 60.00362 * 22 21 10 42 42 H 1.09003 * 109.47317 * 179.97438 * 22 21 10 43 43 H 1.08993 * 109.47667 * 299.99785 * 22 21 10 44 44 H 1.09000 * 109.47229 * 59.99889 * 23 21 10 45 45 H 1.09003 * 109.47594 * 180.02562 * 23 21 10 46 46 H 1.09001 * 109.46998 * 299.99939 * 23 21 10 47 47 H 1.09002 * 110.37276 * 274.75071 * 24 8 6 48 48 H 1.09005 * 110.36891 * 37.07167 * 24 8 6 49 49 H 1.08004 * 120.79157 * 359.70839 * 26 25 4 50 50 H 1.07994 * 120.41864 * 179.97438 * 27 26 25 51 51 H 1.08005 * 119.61818 * 180.02562 * 28 27 26 52 52 H 1.08007 * 119.61139 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 1 1.7239 -0.2675 2.0681 6 6 3.4964 -0.8524 1.0335 7 8 4.0322 -0.8114 -0.0538 8 7 4.2433 -0.9752 2.1486 9 6 3.7263 -1.0377 3.5235 10 6 4.9432 -1.1514 4.4659 11 1 4.7922 -0.5534 5.3646 12 7 5.2003 -2.5510 4.8139 13 6 4.5473 -3.1245 5.8722 14 1 3.8432 -2.5448 6.4506 15 6 4.7913 -4.4505 6.2023 16 7 5.6498 -5.1568 5.4978 17 14 3.9011 -5.2325 7.6464 18 1 2.9963 -4.2335 8.2699 19 1 3.1052 -6.3915 7.1685 20 1 4.8944 -5.6939 8.6491 21 6 6.1017 -0.5773 3.6081 22 6 6.1243 0.9512 3.6697 23 6 7.4475 -1.1608 4.0432 24 6 5.7134 -1.0758 2.1913 25 6 1.4101 -2.1545 1.1221 26 6 0.8879 -2.7092 2.2808 27 6 0.3593 -3.9894 2.2194 28 6 0.3698 -4.6652 1.0138 29 7 0.8749 -4.1064 -0.0684 30 6 1.3860 -2.8907 -0.0470 31 1 -0.3633 0.4513 0.9232 32 1 -0.3633 0.5740 -0.8525 33 1 -0.3633 -1.0252 -0.0710 34 1 3.0848 1.3425 -0.0257 35 1 1.6254 1.9027 -0.8769 36 1 1.6669 1.8867 0.9025 37 1 3.1654 -0.1310 3.7502 38 1 3.0829 -1.9099 3.6384 39 1 5.8329 -3.0717 4.2946 40 1 5.8200 -6.0836 5.7282 41 1 6.2625 1.2712 4.7025 42 1 6.9461 1.3273 3.0602 43 1 5.1810 1.3442 3.2906 44 1 7.4289 -2.2443 3.9252 45 1 8.2420 -0.7413 3.4261 46 1 7.6303 -0.9123 5.0886 47 1 6.0272 -2.1102 2.0513 48 1 6.1597 -0.4367 1.4293 49 1 0.8966 -2.1587 3.2100 50 1 -0.0555 -4.4526 3.1024 51 1 -0.0404 -5.6627 0.9574 52 1 1.7904 -2.4657 -0.9538 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996694108.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:45 Heat of formation + Delta-G solvation = 14.784968 kcal Electronic energy + Delta-G solvation = -32768.093545 eV Core-core repulsion = 28767.606551 eV Total energy + Delta-G solvation = -4000.486994 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.98564 -40.90141 -39.57440 -37.73909 -35.71640 -34.72678 -33.72957 -32.61967 -32.58831 -29.51931 -29.42220 -28.35089 -28.01608 -27.07794 -25.66851 -24.66288 -24.02625 -23.34644 -22.51307 -20.38528 -19.90276 -19.08356 -18.36675 -18.15438 -17.46078 -17.19131 -16.95779 -16.59374 -16.18506 -15.85055 -15.69397 -15.42560 -15.27159 -14.90228 -14.77231 -14.72994 -14.38609 -14.19726 -14.09048 -13.75766 -13.66457 -13.37349 -13.24232 -13.21484 -13.11480 -12.99763 -12.83943 -12.78064 -12.68495 -12.60757 -12.37651 -12.13135 -12.01700 -11.84486 -11.45437 -11.31790 -11.15844 -10.95612 -10.68768 -10.50633 -9.94721 -9.63188 -9.40611 -8.98845 -7.89984 -5.18237 0.02042 0.26931 1.49677 1.51245 1.52942 1.59920 1.86545 2.58666 2.70614 2.94166 3.32860 3.41750 3.42272 3.65096 3.72254 3.80711 3.81015 3.89453 3.98657 4.02119 4.05357 4.16664 4.30574 4.33005 4.39466 4.45612 4.53842 4.59824 4.61589 4.62134 4.66791 4.78787 4.81330 4.88368 4.89206 4.96189 4.98274 5.01045 5.08701 5.09702 5.12035 5.17134 5.25913 5.32807 5.39873 5.55356 5.60846 5.67175 5.80521 5.97290 6.30430 6.52960 6.95307 7.11104 7.38506 8.12415 8.35442 9.33573 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008948 B = 0.004807 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3128.335499 B = 5823.169759 C = 7975.914443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.539 5.539 3 C 0.026 3.974 4 C 0.131 3.869 5 H 0.083 0.917 6 C 0.531 3.469 7 O -0.562 6.562 8 N -0.603 5.603 9 C 0.078 3.922 10 C 0.171 3.829 11 H 0.081 0.919 12 N -0.723 5.723 13 C -0.229 4.229 14 H 0.084 0.916 15 C -0.070 4.070 16 N -0.970 5.970 17 Si 0.963 3.037 18 H -0.260 1.260 19 H -0.300 1.300 20 H -0.301 1.301 21 C -0.075 4.075 22 C -0.121 4.121 23 C -0.120 4.120 24 C 0.122 3.878 25 C -0.137 4.137 26 C -0.064 4.064 27 C -0.169 4.169 28 C 0.091 3.909 29 N -0.512 5.512 30 C 0.119 3.881 31 H 0.040 0.960 32 H 0.089 0.911 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.089 0.911 36 H 0.041 0.959 37 H 0.086 0.914 38 H 0.058 0.942 39 H 0.373 0.627 40 H 0.247 0.753 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.057 0.943 44 H 0.035 0.965 45 H 0.069 0.931 46 H 0.059 0.941 47 H 0.038 0.962 48 H 0.076 0.924 49 H 0.151 0.849 50 H 0.161 0.839 51 H 0.180 0.820 52 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.089 14.214 -5.241 18.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.264 5.264 3 C -0.121 4.121 4 C 0.019 3.981 5 H 0.101 0.899 6 C 0.319 3.681 7 O -0.440 6.440 8 N -0.335 5.335 9 C -0.047 4.047 10 C 0.060 3.940 11 H 0.099 0.901 12 N -0.362 5.362 13 C -0.361 4.361 14 H 0.102 0.898 15 C -0.262 4.262 16 N -0.620 5.620 17 Si 0.793 3.207 18 H -0.184 1.184 19 H -0.228 1.228 20 H -0.229 1.229 21 C -0.077 4.077 22 C -0.178 4.178 23 C -0.178 4.178 24 C -0.001 4.001 25 C -0.140 4.140 26 C -0.091 4.091 27 C -0.188 4.188 28 C -0.065 4.065 29 N -0.221 5.221 30 C -0.038 4.038 31 H 0.059 0.941 32 H 0.107 0.893 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.060 0.940 37 H 0.104 0.896 38 H 0.076 0.924 39 H 0.207 0.793 40 H 0.056 0.944 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.054 0.946 45 H 0.087 0.913 46 H 0.078 0.922 47 H 0.056 0.944 48 H 0.094 0.906 49 H 0.169 0.831 50 H 0.179 0.821 51 H 0.197 0.803 52 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -9.823 13.545 -6.936 18.113 hybrid contribution -0.108 -0.631 1.938 2.041 sum -9.931 12.914 -4.998 17.040 Atomic orbital electron populations 1.22423 0.84964 1.02341 1.02017 1.61665 1.09251 1.14753 1.40708 1.22427 1.00374 0.87207 1.02111 1.20227 0.90108 0.92455 0.95287 0.89904 1.20271 0.89008 0.76073 0.82702 1.90656 1.74144 1.51612 1.27593 1.48468 1.07549 1.70798 1.06715 1.23161 0.99513 1.01205 0.80833 1.21472 0.91487 0.86014 0.94982 0.90072 1.42628 1.50413 1.08056 1.35101 1.19638 1.17228 0.93929 1.05297 0.89788 1.25429 1.01064 0.97777 1.01975 1.69827 1.40014 1.08765 1.43438 0.85228 0.77751 0.78390 0.79332 1.18374 1.22775 1.22930 1.21993 0.95693 0.97340 0.92650 1.21624 1.02273 0.91030 1.02921 1.21506 0.95051 0.99808 1.01406 1.22257 0.80138 0.99548 0.98129 1.20323 1.02044 0.96243 0.95412 1.21780 0.93676 0.95850 0.97773 1.22435 1.00870 0.95210 1.00331 1.23302 0.94532 1.00623 0.88092 1.67762 1.10568 1.11496 1.32256 1.22583 0.94047 0.89336 0.97860 0.94132 0.89269 0.92380 0.92880 0.89234 0.94032 0.89596 0.92373 0.79318 0.94420 0.90984 0.91365 0.92436 0.94586 0.91254 0.92231 0.94380 0.90586 0.83131 0.82142 0.80318 0.83483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 9.16 127.69 1.17 1.72 16 2 N -0.54 -12.91 4.18 -932.20 -3.89 -16.80 16 3 C 0.03 0.54 9.27 127.69 1.18 1.73 16 4 C 0.13 3.48 1.65 43.42 0.07 3.55 16 5 H 0.08 1.89 6.97 -2.39 -0.02 1.87 16 6 C 0.53 17.52 5.87 87.66 0.51 18.03 16 7 O -0.56 -22.08 15.95 -3.03 -0.05 -22.13 16 8 N -0.60 -19.26 3.31 -811.35 -2.69 -21.94 16 9 C 0.08 2.35 5.60 86.73 0.49 2.84 16 10 C 0.17 5.69 2.86 46.18 0.13 5.82 16 11 H 0.08 2.56 8.03 -2.39 -0.02 2.54 16 12 N -0.72 -32.26 4.61 -317.32 -1.46 -33.73 16 13 C -0.23 -11.33 9.98 84.03 0.84 -10.49 16 14 H 0.08 3.87 7.83 -2.91 -0.02 3.85 16 15 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 16 N -0.97 -57.04 13.06 21.65 0.28 -56.76 16 17 Si 0.96 43.34 29.55 68.60 2.03 45.37 16 18 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 19 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 20 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 21 C -0.08 -2.16 0.83 -50.71 -0.04 -2.20 16 22 C -0.12 -2.60 8.59 71.98 0.62 -1.98 16 23 C -0.12 -3.64 8.22 71.98 0.59 -3.04 16 24 C 0.12 3.99 5.82 86.93 0.51 4.50 16 25 C -0.14 -3.89 3.54 -19.78 -0.07 -3.96 16 26 C -0.06 -1.67 9.09 22.47 0.20 -1.46 16 27 C -0.17 -4.17 10.11 22.36 0.23 -3.95 16 28 C 0.09 2.41 11.18 84.68 0.95 3.36 16 29 N -0.51 -16.23 10.36 -195.84 -2.03 -18.26 16 30 C 0.12 3.76 9.55 84.67 0.81 4.57 16 31 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.09 1.35 8.14 -2.38 -0.02 1.34 16 33 H 0.06 1.22 6.33 -2.39 -0.02 1.21 16 34 H 0.05 1.35 6.44 -2.38 -0.02 1.33 16 35 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.09 2.01 7.78 -2.39 -0.02 2.00 16 38 H 0.06 2.00 6.86 -2.39 -0.02 1.99 16 39 H 0.37 18.81 6.10 -92.71 -0.57 18.25 16 40 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 41 H 0.07 1.39 8.14 -2.39 -0.02 1.38 16 42 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.06 1.19 7.91 -2.39 -0.02 1.17 16 44 H 0.04 1.33 6.38 -2.39 -0.02 1.32 16 45 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.04 1.47 7.99 -2.39 -0.02 1.45 16 48 H 0.08 2.38 7.95 -2.38 -0.02 2.36 16 49 H 0.15 3.31 7.62 -2.91 -0.02 3.29 16 50 H 0.16 3.13 8.06 -2.91 -0.02 3.11 16 51 H 0.18 3.62 8.06 -2.91 -0.02 3.59 16 52 H 0.15 4.97 7.95 -2.91 -0.02 4.94 16 Total: -1.00 -67.81 410.88 1.18 -66.62 By element: Atomic # 1 Polarization: 41.54 SS G_CDS: 0.34 Total: 41.88 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: 8.65 Total: 15.75 kcal Atomic # 7 Polarization: -137.70 SS G_CDS: -9.79 Total: -147.49 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.05 Total: -22.13 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -67.81 1.18 -66.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996694108.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.407 kcal (2) G-P(sol) polarization free energy of solvation -67.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds