Wall clock time and date at job start Wed Apr 1 2020 04:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46911 * 2 1 4 4 C 1.53007 * 109.46979 * 240.00469 * 2 1 3 5 5 C 1.50696 * 109.47262 * 120.00418 * 2 1 3 6 6 N 1.31873 * 118.95274 * 59.99859 * 5 2 1 7 7 C 1.32146 * 120.96319 * 180.02562 * 6 5 2 8 8 C 1.39941 * 118.92722 * 0.02562 * 7 6 5 9 9 C 1.47836 * 120.94064 * 179.97438 * 8 7 6 10 10 O 1.21550 * 120.00360 * 172.43697 * 9 8 7 11 11 N 1.34784 * 119.99781 * 352.70137 * 9 8 7 12 12 C 1.47019 * 125.64411 * 4.84635 * 11 9 8 13 13 C 1.54325 * 107.26809 * 181.01777 * 12 11 9 14 14 H 1.09001 * 110.72369 * 140.55154 * 13 12 11 15 15 N 1.46496 * 110.72318 * 263.83053 * 13 12 11 16 16 C 1.36936 * 119.99972 * 273.54530 * 15 13 12 17 17 H 1.07996 * 120.00335 * 359.97438 * 16 15 13 18 18 C 1.38818 * 120.00083 * 179.97438 * 16 15 13 19 19 N 1.31621 * 119.99732 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99876 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47475 * 59.99629 * 20 18 16 22 22 H 1.48500 * 109.46849 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47170 * 299.99531 * 20 18 16 24 24 C 1.55157 * 102.94255 * 22.19491 * 13 12 11 25 25 C 1.52999 * 111.00789 * 82.57102 * 24 13 12 26 26 C 1.53002 * 111.00878 * 206.38625 * 24 13 12 27 27 C 1.47422 * 125.64827 * 184.53276 * 11 9 8 28 28 C 1.39944 * 118.12359 * 0.24299 * 8 7 6 29 29 N 1.31870 * 118.95144 * 240.01938 * 5 2 1 30 30 H 1.08997 * 109.47174 * 299.99193 * 1 2 3 31 31 H 1.08999 * 109.47403 * 59.99981 * 1 2 3 32 32 H 1.09007 * 109.47452 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46458 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47102 * 300.00203 * 3 2 1 35 35 H 1.08997 * 109.46543 * 60.00420 * 3 2 1 36 36 H 1.08998 * 109.46866 * 300.00003 * 4 2 1 37 37 H 1.08999 * 109.47420 * 59.99561 * 4 2 1 38 38 H 1.09002 * 109.47123 * 179.97438 * 4 2 1 39 39 H 1.08002 * 120.53104 * 179.97438 * 7 6 5 40 40 H 1.09000 * 109.88693 * 300.43250 * 12 11 9 41 41 H 1.09000 * 109.88530 * 61.60838 * 12 11 9 42 42 H 0.97001 * 120.00335 * 93.54560 * 15 13 12 43 43 H 0.97002 * 119.99730 * 180.02562 * 19 18 16 44 44 H 1.08994 * 109.47137 * 59.99740 * 25 24 13 45 45 H 1.09004 * 109.47138 * 180.02562 * 25 24 13 46 46 H 1.09001 * 109.47043 * 300.00277 * 25 24 13 47 47 H 1.09002 * 109.46706 * 59.99179 * 26 24 13 48 48 H 1.08991 * 109.47714 * 179.97438 * 26 24 13 49 49 H 1.09002 * 109.46673 * 300.00001 * 26 24 13 50 50 H 1.08997 * 110.36909 * 274.75271 * 27 11 9 51 51 H 1.09004 * 110.36611 * 37.07244 * 27 11 9 52 52 H 1.07997 * 120.54236 * 179.72751 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 2.0323 -0.7105 1.2304 6 7 1.7012 -1.9730 1.4184 7 6 2.1191 -2.6341 2.4835 8 6 2.9239 -1.9728 3.4180 9 6 3.4158 -2.6694 4.6257 10 8 4.2228 -2.1261 5.3544 11 7 2.9735 -3.9091 4.9157 12 6 2.0852 -4.7211 4.0713 13 6 1.8310 -6.0480 4.8173 14 1 0.7936 -6.3623 4.7026 15 7 2.7452 -7.0911 4.3458 16 6 2.4170 -7.8456 3.2512 17 1 1.4840 -7.6720 2.7357 18 6 3.2835 -8.8337 2.8042 19 7 4.4208 -9.0450 3.4322 20 14 2.8361 -9.8624 1.3106 21 1 2.6646 -8.9755 0.1319 22 1 3.9206 -10.8401 1.0401 23 1 1.5677 -10.5891 1.5719 24 6 2.1329 -5.6798 6.2940 25 6 0.9232 -5.0122 6.9511 26 6 2.5738 -6.9116 7.0873 27 6 3.3056 -4.6778 6.1290 28 6 3.2453 -0.6317 3.1800 29 7 2.7888 -0.0497 2.0849 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9562 0.8900 36 1 1.6766 -1.7488 -1.2494 37 1 1.6766 -0.2074 -2.1393 38 1 3.1300 -0.7208 -1.2496 39 1 1.8434 -3.6679 2.6308 40 1 1.1421 -4.1976 3.9144 41 1 2.5648 -4.9207 3.1131 42 1 3.5830 -7.2474 4.8091 43 1 5.0265 -9.7351 3.1195 44 1 0.0741 -5.6951 6.9278 45 1 1.1623 -4.7642 7.9853 46 1 0.6716 -4.1011 6.4082 47 1 3.4760 -7.3283 6.6394 48 1 2.7794 -6.6252 8.1186 49 1 1.7804 -7.6589 7.0686 50 1 4.2469 -5.2107 5.9947 51 1 3.3632 -4.0162 6.9933 52 1 3.8600 -0.0825 3.8777 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996732126.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:42 Heat of formation + Delta-G solvation = 38.050531 kcal Electronic energy + Delta-G solvation = -31629.900479 eV Core-core repulsion = 27630.422356 eV Total energy + Delta-G solvation = -3999.478123 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.52120 -40.02081 -38.05189 -36.79407 -34.41257 -33.84609 -33.31031 -31.51467 -30.87915 -28.28509 -27.54694 -27.46738 -26.90357 -26.67344 -25.09658 -24.20601 -23.79675 -21.87666 -20.15200 -19.96953 -18.91599 -17.93136 -17.28574 -16.69401 -16.50898 -15.90192 -15.59226 -15.15750 -14.81828 -14.69260 -14.22201 -14.14838 -13.95773 -13.90887 -13.65963 -13.37490 -13.21353 -12.79382 -12.55047 -12.45833 -12.42087 -12.10779 -11.96869 -11.91243 -11.81734 -11.68566 -11.62375 -11.22885 -11.20279 -11.09514 -11.06073 -10.94412 -10.90564 -10.65307 -10.50281 -10.33136 -9.95063 -9.84975 -9.73337 -9.58256 -9.29808 -9.05155 -8.43658 -7.15866 -5.91286 -3.22352 0.39255 0.98123 2.86937 3.05013 3.36027 3.41335 3.42285 3.61557 3.71820 3.97379 4.41596 4.45749 4.48880 4.69457 4.74150 4.76118 4.79955 4.92501 4.97419 5.14194 5.21634 5.31319 5.42632 5.44734 5.47162 5.51056 5.60260 5.62260 5.65649 5.70602 5.73142 5.75694 5.80316 5.83640 5.92982 5.97757 6.08103 6.09258 6.09321 6.14339 6.20888 6.21838 6.25999 6.28726 6.41894 6.48972 6.63381 6.81456 6.83011 7.56425 7.64260 7.93650 8.18864 8.26159 9.38455 9.91300 10.25878 11.30342 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009476 B = 0.003497 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2954.240964 B = 8003.957555 C = 9979.456109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.002 4.002 3 C -0.128 4.128 4 C -0.137 4.137 5 C 0.338 3.662 6 N -0.513 5.513 7 C 0.153 3.847 8 C -0.241 4.241 9 C 0.580 3.420 10 O -0.545 6.545 11 N -0.595 5.595 12 C 0.053 3.947 13 C 0.180 3.820 14 H 0.074 0.926 15 N -0.710 5.710 16 C -0.253 4.253 17 H 0.073 0.927 18 C -0.004 4.004 19 N -0.927 5.927 20 Si 0.907 3.093 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.284 1.284 24 C -0.089 4.089 25 C -0.130 4.130 26 C -0.125 4.125 27 C 0.122 3.878 28 C 0.204 3.796 29 N -0.519 5.519 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.206 0.794 40 H 0.065 0.935 41 H 0.089 0.911 42 H 0.388 0.612 43 H 0.258 0.742 44 H 0.060 0.940 45 H 0.054 0.946 46 H 0.051 0.949 47 H 0.070 0.930 48 H 0.046 0.954 49 H 0.061 0.939 50 H 0.074 0.926 51 H 0.073 0.927 52 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.869 16.050 -0.803 17.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.004 4.004 3 C -0.186 4.186 4 C -0.195 4.195 5 C 0.072 3.928 6 N -0.226 5.226 7 C -0.012 4.012 8 C -0.248 4.248 9 C 0.368 3.632 10 O -0.424 6.424 11 N -0.326 5.326 12 C -0.073 4.073 13 C 0.067 3.933 14 H 0.092 0.908 15 N -0.351 5.351 16 C -0.384 4.384 17 H 0.091 0.909 18 C -0.201 4.201 19 N -0.574 5.574 20 Si 0.737 3.263 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.211 1.211 24 C -0.090 4.090 25 C -0.188 4.188 26 C -0.183 4.183 27 C 0.000 4.000 28 C 0.037 3.963 29 N -0.232 5.232 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.222 0.778 40 H 0.082 0.918 41 H 0.106 0.894 42 H 0.224 0.776 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.073 0.927 46 H 0.071 0.929 47 H 0.089 0.911 48 H 0.065 0.935 49 H 0.081 0.919 50 H 0.092 0.908 51 H 0.091 0.909 52 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -7.784 16.733 -1.402 18.508 hybrid contribution 0.552 -1.128 0.017 1.256 sum -7.232 15.605 -1.386 17.255 Atomic orbital electron populations 1.21845 0.92363 1.03160 1.02017 1.19445 0.96393 0.95109 0.89455 1.21722 1.01829 0.93320 1.01724 1.21859 1.01114 1.01237 0.95319 1.23398 0.88047 0.87346 0.94008 1.68355 1.23751 1.09052 1.21398 1.25387 0.87366 1.02076 0.86418 1.21742 1.05332 0.98065 0.99669 1.17396 0.81194 0.80292 0.84338 1.90758 1.33813 1.66489 1.51359 1.48245 1.47959 1.14043 1.22403 1.23802 0.92406 0.94637 0.96453 1.21244 0.95653 0.86936 0.89453 0.90801 1.42458 1.21371 1.37334 1.33957 1.19170 1.03026 1.11703 1.04477 0.90932 1.24751 0.96602 0.99437 0.99341 1.69643 1.10598 1.35308 1.41840 0.86288 0.77290 0.80025 0.82673 1.21126 1.21679 1.21091 1.22062 0.94740 0.95407 0.96802 1.21689 0.97061 1.00137 0.99907 1.21580 1.02800 0.96037 0.97904 1.22387 0.98170 0.92911 0.86548 1.23448 0.90623 0.90322 0.91889 1.68377 1.12120 1.39064 1.03636 0.92781 0.91498 0.91199 0.91929 0.92325 0.91978 0.91134 0.91493 0.92683 0.77800 0.91761 0.89374 0.77631 0.93230 0.92134 0.92673 0.92950 0.91127 0.93502 0.91947 0.90793 0.90884 0.80442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 8.37 37.16 0.31 -0.93 16 2 C 0.00 -0.02 0.92 -155.66 -0.14 -0.16 16 3 C -0.13 -1.18 7.66 37.16 0.28 -0.89 16 4 C -0.14 -1.34 8.37 37.16 0.31 -1.03 16 5 C 0.34 4.53 6.25 -157.06 -0.98 3.55 16 6 N -0.51 -7.34 9.77 -10.40 -0.10 -7.45 16 7 C 0.15 2.22 9.87 -16.78 -0.17 2.05 16 8 C -0.24 -3.59 5.90 -104.69 -0.62 -4.21 16 9 C 0.58 9.67 7.82 -12.33 -0.10 9.57 16 10 O -0.54 -10.32 16.77 5.32 0.09 -10.23 16 11 N -0.60 -9.47 3.31 -171.77 -0.57 -10.04 16 12 C 0.05 0.81 4.30 -3.07 -0.01 0.80 16 13 C 0.18 3.03 2.86 -66.10 -0.19 2.84 16 14 H 0.07 1.22 8.03 -51.93 -0.42 0.81 16 15 N -0.71 -15.52 4.61 -51.65 -0.24 -15.75 16 16 C -0.25 -6.30 9.98 -15.06 -0.15 -6.45 16 17 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 18 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 19 N -0.93 -26.23 13.06 55.49 0.72 -25.51 16 20 Si 0.91 21.13 29.55 -169.99 -5.02 16.10 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 C -0.09 -1.27 0.83 -152.24 -0.13 -1.40 16 25 C -0.13 -1.55 8.58 37.16 0.32 -1.24 16 26 C -0.13 -1.85 8.22 37.16 0.31 -1.54 16 27 C 0.12 1.89 5.80 -2.41 -0.01 1.88 16 28 C 0.20 2.84 10.88 -16.78 -0.18 2.66 16 29 N -0.52 -7.11 8.98 -10.40 -0.09 -7.20 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.70 8.01 -51.92 -0.42 0.28 16 33 H 0.06 0.62 8.04 -51.93 -0.42 0.20 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.60 8.04 -51.93 -0.42 0.18 16 36 H 0.07 0.76 8.01 -51.93 -0.42 0.34 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.21 2.86 2.96 -52.85 -0.16 2.71 16 40 H 0.06 0.85 6.68 -51.93 -0.35 0.50 16 41 H 0.09 1.54 6.72 -51.93 -0.35 1.19 16 42 H 0.39 9.19 6.10 -40.82 -0.25 8.94 16 43 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.05 0.62 7.91 -51.93 -0.41 0.21 16 47 H 0.07 1.21 6.38 -51.93 -0.33 0.88 16 48 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 50 H 0.07 1.27 7.99 -51.93 -0.41 0.85 16 51 H 0.07 1.08 8.01 -51.93 -0.42 0.67 16 52 H 0.18 2.20 7.76 -52.49 -0.41 1.79 16 LS Contribution 409.52 15.07 6.17 6.17 Total: -1.00 -29.46 409.52 -8.80 -38.26 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -8.52 Total: 10.36 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: -1.25 Total: 5.29 kcal Atomic # 7 Polarization: -65.67 SS G_CDS: -0.28 Total: -65.95 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -29.46 -8.80 -38.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996732126.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.312 kcal (2) G-P(sol) polarization free energy of solvation -29.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds