Wall clock time and date at job start Wed Apr 1 2020 04:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46911 * 2 1 4 4 C 1.53007 * 109.46979 * 240.00469 * 2 1 3 5 5 C 1.50696 * 109.47262 * 120.00418 * 2 1 3 6 6 N 1.31873 * 118.95274 * 59.99859 * 5 2 1 7 7 C 1.32146 * 120.96319 * 180.02562 * 6 5 2 8 8 C 1.39941 * 118.92722 * 0.02562 * 7 6 5 9 9 C 1.47836 * 120.94064 * 179.97438 * 8 7 6 10 10 O 1.21550 * 120.00360 * 172.43697 * 9 8 7 11 11 N 1.34784 * 119.99781 * 352.70137 * 9 8 7 12 12 C 1.47019 * 125.64411 * 4.84635 * 11 9 8 13 13 C 1.54325 * 107.26809 * 181.01777 * 12 11 9 14 14 H 1.09001 * 110.72369 * 140.55154 * 13 12 11 15 15 N 1.46496 * 110.72318 * 263.83053 * 13 12 11 16 16 C 1.36936 * 119.99972 * 273.54530 * 15 13 12 17 17 H 1.07996 * 120.00335 * 359.97438 * 16 15 13 18 18 C 1.38818 * 120.00083 * 179.97438 * 16 15 13 19 19 N 1.31621 * 119.99732 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99876 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47475 * 59.99629 * 20 18 16 22 22 H 1.48500 * 109.46849 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47170 * 299.99531 * 20 18 16 24 24 C 1.55157 * 102.94255 * 22.19491 * 13 12 11 25 25 C 1.52999 * 111.00789 * 82.57102 * 24 13 12 26 26 C 1.53002 * 111.00878 * 206.38625 * 24 13 12 27 27 C 1.47422 * 125.64827 * 184.53276 * 11 9 8 28 28 C 1.39944 * 118.12359 * 0.24299 * 8 7 6 29 29 N 1.31870 * 118.95144 * 240.01938 * 5 2 1 30 30 H 1.08997 * 109.47174 * 299.99193 * 1 2 3 31 31 H 1.08999 * 109.47403 * 59.99981 * 1 2 3 32 32 H 1.09007 * 109.47452 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46458 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47102 * 300.00203 * 3 2 1 35 35 H 1.08997 * 109.46543 * 60.00420 * 3 2 1 36 36 H 1.08998 * 109.46866 * 300.00003 * 4 2 1 37 37 H 1.08999 * 109.47420 * 59.99561 * 4 2 1 38 38 H 1.09002 * 109.47123 * 179.97438 * 4 2 1 39 39 H 1.08002 * 120.53104 * 179.97438 * 7 6 5 40 40 H 1.09000 * 109.88693 * 300.43250 * 12 11 9 41 41 H 1.09000 * 109.88530 * 61.60838 * 12 11 9 42 42 H 0.97001 * 120.00335 * 93.54560 * 15 13 12 43 43 H 0.97002 * 119.99730 * 180.02562 * 19 18 16 44 44 H 1.08994 * 109.47137 * 59.99740 * 25 24 13 45 45 H 1.09004 * 109.47138 * 180.02562 * 25 24 13 46 46 H 1.09001 * 109.47043 * 300.00277 * 25 24 13 47 47 H 1.09002 * 109.46706 * 59.99179 * 26 24 13 48 48 H 1.08991 * 109.47714 * 179.97438 * 26 24 13 49 49 H 1.09002 * 109.46673 * 300.00001 * 26 24 13 50 50 H 1.08997 * 110.36909 * 274.75271 * 27 11 9 51 51 H 1.09004 * 110.36611 * 37.07244 * 27 11 9 52 52 H 1.07997 * 120.54236 * 179.72751 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 2.0323 -0.7105 1.2304 6 7 1.7012 -1.9730 1.4184 7 6 2.1191 -2.6341 2.4835 8 6 2.9239 -1.9728 3.4180 9 6 3.4158 -2.6694 4.6257 10 8 4.2228 -2.1261 5.3544 11 7 2.9735 -3.9091 4.9157 12 6 2.0852 -4.7211 4.0713 13 6 1.8310 -6.0480 4.8173 14 1 0.7936 -6.3623 4.7026 15 7 2.7452 -7.0911 4.3458 16 6 2.4170 -7.8456 3.2512 17 1 1.4840 -7.6720 2.7357 18 6 3.2835 -8.8337 2.8042 19 7 4.4208 -9.0450 3.4322 20 14 2.8361 -9.8624 1.3106 21 1 2.6646 -8.9755 0.1319 22 1 3.9206 -10.8401 1.0401 23 1 1.5677 -10.5891 1.5719 24 6 2.1329 -5.6798 6.2940 25 6 0.9232 -5.0122 6.9511 26 6 2.5738 -6.9116 7.0873 27 6 3.3056 -4.6778 6.1290 28 6 3.2453 -0.6317 3.1800 29 7 2.7888 -0.0497 2.0849 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9562 0.8900 36 1 1.6766 -1.7488 -1.2494 37 1 1.6766 -0.2074 -2.1393 38 1 3.1300 -0.7208 -1.2496 39 1 1.8434 -3.6679 2.6308 40 1 1.1421 -4.1976 3.9144 41 1 2.5648 -4.9207 3.1131 42 1 3.5830 -7.2474 4.8091 43 1 5.0265 -9.7351 3.1195 44 1 0.0741 -5.6951 6.9278 45 1 1.1623 -4.7642 7.9853 46 1 0.6716 -4.1011 6.4082 47 1 3.4760 -7.3283 6.6394 48 1 2.7794 -6.6252 8.1186 49 1 1.7804 -7.6589 7.0686 50 1 4.2469 -5.2107 5.9947 51 1 3.3632 -4.0162 6.9933 52 1 3.8600 -0.0825 3.8777 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996732126.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:41 Heat of formation + Delta-G solvation = 21.430757 kcal Electronic energy + Delta-G solvation = -31630.621167 eV Core-core repulsion = 27630.422356 eV Total energy + Delta-G solvation = -4000.198811 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.64499 -41.28093 -39.37630 -37.69237 -35.86930 -35.27376 -34.55993 -32.75204 -32.50214 -29.71463 -28.35342 -28.20362 -28.07181 -27.85891 -26.39628 -25.44792 -25.25230 -23.27979 -21.26965 -21.04549 -20.24902 -19.16119 -18.99951 -17.81315 -17.64155 -17.23661 -16.91358 -16.49442 -16.15230 -15.80409 -15.70650 -15.41813 -15.13439 -14.84834 -14.69425 -14.64993 -14.48601 -14.27618 -13.71929 -13.48448 -13.25143 -13.20240 -13.12989 -13.08182 -12.84391 -12.78994 -12.74303 -12.65804 -12.57730 -12.19090 -12.17501 -12.07760 -12.04470 -11.95896 -11.87171 -11.77442 -11.46188 -11.29436 -11.15230 -10.89069 -10.71045 -10.38145 -9.77244 -9.01151 -7.91882 -5.20148 -0.73928 -0.13592 1.51221 1.51990 1.57564 1.60266 1.77862 2.57272 2.59206 2.64685 2.91599 3.19611 3.33953 3.39643 3.53119 3.73047 3.78337 3.83630 3.84949 3.98045 3.98154 4.03020 4.24293 4.33735 4.37487 4.52954 4.55278 4.59706 4.71594 4.76330 4.78145 4.83808 4.87069 4.89610 4.91980 4.97954 4.98704 5.00507 5.06053 5.09707 5.13370 5.19202 5.29517 5.30653 5.34937 5.40287 5.47912 5.55978 5.60788 5.72004 6.28955 6.33510 6.83698 6.87928 7.37632 8.10783 8.33352 9.30880 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009476 B = 0.003497 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2954.240964 B = 8003.957555 C = 9979.456109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.006 4.006 3 C -0.123 4.123 4 C -0.134 4.134 5 C 0.334 3.666 6 N -0.522 5.522 7 C 0.154 3.846 8 C -0.252 4.252 9 C 0.580 3.420 10 O -0.572 6.572 11 N -0.595 5.595 12 C 0.063 3.937 13 C 0.171 3.829 14 H 0.086 0.914 15 N -0.721 5.721 16 C -0.237 4.237 17 H 0.085 0.915 18 C -0.069 4.069 19 N -0.967 5.967 20 Si 0.963 3.037 21 H -0.281 1.281 22 H -0.304 1.304 23 H -0.276 1.276 24 C -0.075 4.075 25 C -0.124 4.124 26 C -0.120 4.120 27 C 0.121 3.879 28 C 0.207 3.793 29 N -0.522 5.522 30 H 0.050 0.950 31 H 0.092 0.908 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.083 0.917 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.093 0.907 38 H 0.044 0.956 39 H 0.208 0.792 40 H 0.096 0.904 41 H 0.068 0.932 42 H 0.376 0.624 43 H 0.248 0.752 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.055 0.945 47 H 0.038 0.962 48 H 0.071 0.929 49 H 0.059 0.941 50 H 0.050 0.950 51 H 0.083 0.917 52 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.228 17.808 -1.388 20.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.008 4.008 3 C -0.181 4.181 4 C -0.192 4.192 5 C 0.068 3.932 6 N -0.235 5.235 7 C -0.012 4.012 8 C -0.260 4.260 9 C 0.369 3.631 10 O -0.453 6.453 11 N -0.325 5.325 12 C -0.062 4.062 13 C 0.060 3.940 14 H 0.104 0.896 15 N -0.361 5.361 16 C -0.369 4.369 17 H 0.102 0.898 18 C -0.261 4.261 19 N -0.617 5.617 20 Si 0.793 3.207 21 H -0.207 1.207 22 H -0.231 1.231 23 H -0.202 1.202 24 C -0.077 4.077 25 C -0.181 4.181 26 C -0.178 4.178 27 C -0.001 4.001 28 C 0.039 3.961 29 N -0.235 5.235 30 H 0.069 0.931 31 H 0.110 0.890 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.112 0.888 38 H 0.063 0.937 39 H 0.224 0.776 40 H 0.114 0.886 41 H 0.086 0.914 42 H 0.210 0.790 43 H 0.057 0.943 44 H 0.091 0.909 45 H 0.089 0.911 46 H 0.074 0.926 47 H 0.057 0.943 48 H 0.090 0.910 49 H 0.078 0.922 50 H 0.068 0.932 51 H 0.101 0.899 52 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -10.208 18.524 -1.992 21.244 hybrid contribution 1.248 -1.573 0.207 2.018 sum -8.960 16.952 -1.785 19.257 Atomic orbital electron populations 1.21826 0.91090 1.02836 1.03148 1.19681 0.97351 0.95550 0.88249 1.21693 1.01131 0.92518 1.02724 1.21849 1.00462 1.00796 0.96093 1.24116 0.87190 0.87191 0.94665 1.68423 1.24213 1.09610 1.21271 1.25391 0.87183 1.02148 0.86439 1.21615 1.06435 0.98528 0.99399 1.17621 0.80703 0.80290 0.84489 1.90738 1.35045 1.67159 1.52408 1.48283 1.47823 1.13920 1.22483 1.23618 0.93434 0.94094 0.95048 1.21512 0.95060 0.86132 0.91252 0.89634 1.42605 1.21749 1.38391 1.33349 1.19601 1.02564 1.10453 1.04271 0.89757 1.25435 0.97047 1.01486 1.02151 1.69800 1.11902 1.36339 1.43691 0.85364 0.76701 0.78476 0.80126 1.20696 1.23076 1.20189 1.22012 0.95386 0.94994 0.95268 1.21656 0.95821 1.00146 1.00505 1.21514 1.01165 0.95992 0.99142 1.22391 0.97740 0.93141 0.86845 1.23685 0.90236 0.90062 0.92084 1.68487 1.12344 1.38994 1.03640 0.93064 0.88966 0.92233 0.92975 0.89806 0.92495 0.92412 0.88822 0.93685 0.77628 0.88633 0.91371 0.79019 0.94293 0.90931 0.91081 0.92639 0.94287 0.91014 0.92238 0.93212 0.89852 0.79310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 8.37 71.98 0.60 -1.47 16 2 C -0.01 -0.12 0.92 -52.93 -0.05 -0.17 16 3 C -0.12 -1.98 7.66 71.98 0.55 -1.43 16 4 C -0.13 -2.37 8.37 71.98 0.60 -1.77 16 5 C 0.33 8.54 6.25 138.70 0.87 9.40 16 6 N -0.52 -14.44 9.77 -186.80 -1.83 -16.26 16 7 C 0.15 4.34 9.87 85.06 0.84 5.18 16 8 C -0.25 -7.39 5.90 -19.91 -0.12 -7.51 16 9 C 0.58 19.15 7.82 86.78 0.68 19.83 16 10 O -0.57 -21.65 16.77 -3.87 -0.06 -21.71 16 11 N -0.59 -18.60 3.31 -815.64 -2.70 -21.30 16 12 C 0.06 1.88 4.30 86.73 0.37 2.25 16 13 C 0.17 5.57 2.86 46.18 0.13 5.71 16 14 H 0.09 2.64 8.03 -2.39 -0.02 2.62 16 15 N -0.72 -31.74 4.61 -317.33 -1.46 -33.20 16 16 C -0.24 -11.78 9.98 84.03 0.84 -10.94 16 17 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 18 C -0.07 -3.68 5.50 84.86 0.47 -3.22 16 19 N -0.97 -56.50 13.06 21.65 0.28 -56.22 16 20 Si 0.96 43.91 29.55 68.60 2.03 45.94 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 22 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 23 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 24 C -0.08 -2.06 0.83 -50.71 -0.04 -2.10 16 25 C -0.12 -2.58 8.58 71.98 0.62 -1.96 16 26 C -0.12 -3.46 8.22 71.98 0.59 -2.87 16 27 C 0.12 3.71 5.80 86.93 0.50 4.21 16 28 C 0.21 5.59 10.88 85.06 0.93 6.52 16 29 N -0.52 -13.74 8.98 -186.80 -1.68 -15.42 16 30 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.06 1.07 8.01 -2.38 -0.02 1.05 16 33 H 0.05 0.95 8.04 -2.39 -0.02 0.93 16 34 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.06 0.98 8.04 -2.39 -0.02 0.96 16 36 H 0.06 1.17 8.01 -2.39 -0.02 1.15 16 37 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.21 5.59 2.96 -3.25 -0.01 5.58 16 40 H 0.10 2.30 6.68 -2.39 -0.02 2.28 16 41 H 0.07 2.36 6.72 -2.39 -0.02 2.34 16 42 H 0.38 18.41 6.10 -92.71 -0.57 17.84 16 43 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 44 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.07 1.29 8.14 -2.38 -0.02 1.28 16 46 H 0.05 1.14 7.91 -2.39 -0.02 1.12 16 47 H 0.04 1.37 6.38 -2.39 -0.02 1.36 16 48 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 49 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 50 H 0.05 1.77 7.99 -2.39 -0.02 1.75 16 51 H 0.08 2.39 8.01 -2.39 -0.02 2.37 16 52 H 0.19 4.56 7.76 -2.91 -0.02 4.54 16 Total: -1.00 -64.47 409.52 3.32 -61.16 By element: Atomic # 1 Polarization: 36.99 SS G_CDS: 0.35 Total: 37.34 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: 8.38 Total: 19.67 kcal Atomic # 7 Polarization: -135.02 SS G_CDS: -7.38 Total: -142.40 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.06 Total: -21.71 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -64.47 3.32 -61.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996732126.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.586 kcal (2) G-P(sol) polarization free energy of solvation -64.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds