Wall clock time and date at job start Wed Apr 1 2020 04:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34854 * 125.96624 * 2 1 4 4 N 1.36305 * 106.68720 * 179.89904 * 3 2 1 5 5 C 1.35418 * 107.40353 * 0.33447 * 4 3 2 6 6 N 1.30086 * 108.62662 * 359.81687 * 5 4 3 7 7 C 1.51044 * 123.98339 * 179.85035 * 5 4 3 8 8 C 1.53410 * 108.20738 * 15.94959 * 7 5 4 9 9 H 1.08996 * 109.55664 * 71.12851 * 8 7 5 10 10 C 1.50698 * 109.50612 * 191.25317 * 8 7 5 11 11 O 1.21273 * 120.00436 * 119.75288 * 10 8 7 12 12 N 1.34784 * 119.99883 * 299.75406 * 10 8 7 13 13 C 1.46498 * 120.00119 * 179.97438 * 12 10 8 14 14 C 1.52994 * 109.47249 * 180.02562 * 13 12 10 15 15 C 1.53039 * 109.46005 * 295.02881 * 14 13 12 16 16 C 1.53200 * 109.31472 * 178.59980 * 15 14 13 17 17 N 1.46923 * 108.76335 * 54.65334 * 16 15 14 18 18 C 1.36942 * 120.62990 * 126.40270 * 17 16 15 19 19 H 1.07997 * 120.00132 * 207.66054 * 18 17 16 20 20 C 1.38815 * 119.99524 * 27.66323 * 18 17 16 21 21 N 1.31610 * 120.00038 * 17.37374 * 20 18 17 22 22 Si 1.86797 * 119.99772 * 197.37446 * 20 18 17 23 23 H 1.48499 * 109.47165 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47118 * 119.99906 * 22 20 18 25 25 H 1.48497 * 109.47410 * 240.00297 * 22 20 18 26 26 C 1.46928 * 118.74299 * 306.38857 * 17 16 15 27 27 C 1.53038 * 109.46324 * 174.97383 * 14 13 12 28 28 C 1.53155 * 109.23464 * 311.17170 * 8 7 5 29 29 C 1.46476 * 127.77123 * 180.02562 * 4 3 2 30 30 H 1.08992 * 109.46954 * 269.71316 * 1 2 3 31 31 H 1.09004 * 109.46983 * 149.71678 * 1 2 3 32 32 H 1.08992 * 109.46919 * 29.71675 * 1 2 3 33 33 H 1.08001 * 126.65162 * 0.02562 * 3 2 1 34 34 H 1.09001 * 109.71592 * 135.60897 * 7 5 4 35 35 H 1.08999 * 109.72085 * 256.25401 * 7 5 4 36 36 H 0.96997 * 119.99739 * 0.02562 * 12 10 8 37 37 H 1.09001 * 109.47095 * 300.00115 * 13 12 10 38 38 H 1.09002 * 109.47121 * 59.99904 * 13 12 10 39 39 H 1.08997 * 109.45890 * 55.00025 * 14 13 12 40 40 H 1.08999 * 109.49773 * 298.56622 * 15 14 13 41 41 H 1.09000 * 109.49857 * 58.66374 * 15 14 13 42 42 H 1.08997 * 109.59518 * 294.87140 * 16 15 14 43 43 H 1.08996 * 109.58608 * 174.43417 * 16 15 14 44 44 H 0.97003 * 120.00258 * 179.97438 * 21 20 18 45 45 H 1.09004 * 109.58188 * 293.81975 * 26 17 16 46 46 H 1.08997 * 109.70728 * 173.46228 * 26 17 16 47 47 H 1.08999 * 109.49929 * 301.33954 * 27 14 13 48 48 H 1.09002 * 109.49587 * 61.43009 * 27 14 13 49 49 H 1.08993 * 109.46640 * 309.48904 * 28 8 7 50 50 H 1.08999 * 109.46353 * 189.49916 * 28 8 7 51 51 H 1.08999 * 109.58480 * 317.24958 * 29 4 3 52 52 H 1.09001 * 109.58454 * 77.66589 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2990 1.0915 0.0000 4 7 3.5856 0.6414 0.0023 5 6 3.5413 -0.7120 -0.0039 6 7 2.2957 -1.0870 -0.0058 7 6 4.7655 -1.5968 -0.0070 8 6 5.9745 -0.7438 0.3982 9 1 5.9076 -0.4960 1.4575 10 6 7.2434 -1.5150 0.1408 11 8 8.0732 -1.0781 -0.6281 12 7 7.4560 -2.6904 0.7652 13 6 8.6893 -3.4404 0.5147 14 6 8.6800 -4.7279 1.3410 15 6 8.7136 -4.3781 2.8305 16 6 8.6689 -5.6684 3.6552 17 7 9.7618 -6.5473 3.2172 18 6 10.6566 -7.0522 4.1226 19 1 11.6600 -7.2999 3.8095 20 6 10.2736 -7.2456 5.4428 21 7 8.9967 -7.2776 5.7597 22 14 11.5709 -7.4605 6.7696 23 1 12.9219 -7.3858 6.1577 24 1 11.4257 -6.3846 7.7828 25 1 11.3965 -8.7825 7.4230 26 6 9.8763 -6.8745 1.7894 27 6 9.9070 -5.5707 0.9857 28 6 5.9827 0.5451 -0.4291 29 6 4.8148 1.4381 0.0037 30 1 -0.3633 -0.0051 1.0276 31 1 -0.3633 -0.8875 -0.5182 32 1 -0.3633 0.8925 -0.5094 33 1 1.9764 2.1221 0.0004 34 1 4.6335 -2.4097 0.7070 35 1 4.9215 -2.0053 -1.0055 36 1 6.7921 -3.0400 1.3800 37 1 8.7542 -3.6893 -0.5446 38 1 9.5483 -2.8323 0.7983 39 1 7.7748 -5.2939 1.1213 40 1 9.6307 -3.8337 3.0557 41 1 7.8519 -3.7582 3.0782 42 1 7.7131 -6.1686 3.4998 43 1 8.7920 -5.4310 4.7119 44 1 8.7290 -7.4131 6.6822 45 1 9.0189 -7.4732 1.4819 46 1 10.7948 -7.4341 1.6131 47 1 9.8949 -5.7998 -0.0798 48 1 10.8128 -5.0149 1.2285 49 1 5.8794 0.2990 -1.4858 50 1 6.9226 1.0733 -0.2692 51 1 4.7123 2.2692 -0.6940 52 1 5.0005 1.8215 1.0071 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001538658.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:12 Heat of formation + Delta-G solvation = 24.318065 kcal Electronic energy + Delta-G solvation = -30350.446440 eV Core-core repulsion = 26350.372832 eV Total energy + Delta-G solvation = -4000.073608 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.64881 -40.13676 -37.98287 -36.64270 -35.03316 -33.77432 -32.83611 -31.82469 -30.71239 -29.88132 -29.28974 -27.75351 -26.67489 -24.55773 -24.09980 -23.01279 -22.23479 -21.09082 -20.82205 -20.21419 -19.45188 -19.11141 -17.33457 -17.21521 -16.72415 -16.28133 -15.82977 -15.61236 -14.86039 -14.58298 -14.50025 -14.46864 -14.18629 -13.97376 -13.86889 -13.55490 -13.49909 -13.26831 -13.06243 -12.77487 -12.58900 -12.42911 -12.38444 -12.17978 -12.03232 -11.85140 -11.64420 -11.51165 -11.40949 -11.01769 -10.74271 -10.54656 -10.26504 -10.24785 -10.17022 -10.00796 -9.89625 -9.77675 -9.58412 -9.46125 -9.06857 -8.48842 -8.45178 -6.69107 -5.80725 -3.22365 1.75184 2.43029 2.44838 2.82955 3.01572 3.35586 3.43865 3.45975 3.83946 4.07063 4.16073 4.19652 4.48400 4.59770 4.67162 4.70548 4.77368 4.94406 4.98029 5.07844 5.10535 5.20881 5.26942 5.32580 5.33455 5.40406 5.45018 5.47715 5.55880 5.62910 5.65057 5.78566 5.83101 5.88165 6.01549 6.04550 6.11964 6.25512 6.35900 6.48551 6.53741 6.54108 6.64522 6.73582 6.79465 6.88207 6.96590 7.33161 7.41034 7.62706 7.78538 7.87634 8.07240 8.43465 9.20015 9.83666 10.39979 11.27806 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015669 B = 0.002025 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.579264 B =13821.892380 C =14656.535234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.004 4.004 3 C -0.055 4.055 4 N -0.456 5.456 5 C 0.213 3.787 6 N -0.483 5.483 7 C -0.024 4.024 8 C -0.114 4.114 9 H 0.106 0.894 10 C 0.520 3.480 11 O -0.541 6.541 12 N -0.720 5.720 13 C 0.123 3.877 14 C -0.091 4.091 15 C -0.135 4.135 16 C 0.170 3.830 17 N -0.593 5.593 18 C -0.251 4.251 19 H 0.066 0.934 20 C 0.001 3.999 21 N -0.903 5.903 22 Si 0.901 3.099 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.290 1.290 26 C 0.146 3.854 27 C -0.124 4.124 28 C -0.115 4.115 29 C 0.103 3.897 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.173 0.827 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.403 0.597 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.045 0.955 42 H 0.017 0.983 43 H 0.087 0.913 44 H 0.253 0.747 45 H 0.017 0.983 46 H 0.054 0.946 47 H 0.052 0.948 48 H 0.060 0.940 49 H 0.082 0.918 50 H 0.102 0.898 51 H 0.094 0.906 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.159 18.817 -12.599 25.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.134 4.134 3 C -0.188 4.188 4 N -0.139 5.139 5 C -0.049 4.049 6 N -0.202 5.202 7 C -0.063 4.063 8 C -0.136 4.136 9 H 0.124 0.876 10 C 0.305 3.695 11 O -0.419 6.419 12 N -0.371 5.371 13 C 0.000 4.000 14 C -0.110 4.110 15 C -0.174 4.174 16 C 0.044 3.956 17 N -0.315 5.315 18 C -0.380 4.380 19 H 0.083 0.917 20 C -0.198 4.198 21 N -0.548 5.548 22 Si 0.731 3.269 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.217 1.217 26 C 0.019 3.981 27 C -0.164 4.164 28 C -0.153 4.153 29 C -0.019 4.019 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.191 0.809 34 H 0.121 0.879 35 H 0.114 0.886 36 H 0.238 0.762 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.035 0.965 43 H 0.105 0.895 44 H 0.063 0.937 45 H 0.035 0.965 46 H 0.073 0.927 47 H 0.071 0.929 48 H 0.079 0.921 49 H 0.101 0.899 50 H 0.120 0.880 51 H 0.113 0.887 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.748 18.377 -12.987 25.384 hybrid contribution 0.513 0.680 1.140 1.423 sum -11.235 19.056 -11.847 25.094 Atomic orbital electron populations 1.20004 0.87659 1.02511 1.02155 1.20820 0.96512 0.88275 1.07754 1.22295 0.82828 1.00380 1.13320 1.45376 1.06590 1.07418 1.54533 1.23035 0.94643 0.81533 1.05707 1.69959 0.99612 1.30427 1.20225 1.20129 0.86045 0.95564 1.04572 1.21457 0.93243 0.96039 1.02827 0.87612 1.20195 0.87558 0.81307 0.80451 1.90707 1.46502 1.68524 1.36136 1.46113 1.22750 1.21697 1.46498 1.21591 0.85857 0.92845 0.99704 1.21316 0.99732 0.93949 0.96014 1.22257 1.00220 1.00691 0.94239 1.20774 0.89793 0.86514 0.98484 1.44064 1.32634 1.53515 1.01324 1.19234 0.91683 1.37394 0.89716 0.91655 1.25031 0.95740 1.00286 0.98719 1.70037 1.13762 1.53338 1.17627 0.86244 0.81299 0.77321 0.82056 1.20264 1.21588 1.21747 1.20882 0.98760 0.92808 0.85627 1.21982 0.96971 0.98704 0.98764 1.21720 0.98128 0.94468 1.00963 1.22058 0.81932 0.94407 1.03472 0.91482 0.91209 0.91510 0.80943 0.87893 0.88622 0.76189 0.91827 0.91552 0.91200 0.92536 0.93639 0.96479 0.89477 0.93710 0.96502 0.92742 0.92933 0.92087 0.89895 0.87991 0.88747 0.89432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.42 36.01 0.38 -0.13 16 2 C 0.00 -0.05 7.10 -82.71 -0.59 -0.64 16 3 C -0.06 -0.49 11.55 -16.76 -0.19 -0.68 16 4 N -0.46 -4.08 3.13 -113.76 -0.36 -4.43 16 5 C 0.21 2.32 7.65 -155.25 -1.19 1.13 16 6 N -0.48 -6.26 11.24 -6.88 -0.08 -6.33 16 7 C -0.02 -0.21 5.47 -27.50 -0.15 -0.36 16 8 C -0.11 -0.93 2.55 -91.48 -0.23 -1.17 16 9 H 0.11 0.76 8.12 -51.93 -0.42 0.34 16 10 C 0.52 5.84 7.13 -10.98 -0.08 5.76 16 11 O -0.54 -7.96 15.83 5.56 0.09 -7.88 16 12 N -0.72 -7.97 5.18 -60.30 -0.31 -8.29 16 13 C 0.12 1.60 5.06 -4.05 -0.02 1.58 16 14 C -0.09 -1.36 2.19 -90.58 -0.20 -1.55 16 15 C -0.13 -2.33 5.25 -26.61 -0.14 -2.47 16 16 C 0.17 3.86 5.31 -3.71 -0.02 3.84 16 17 N -0.59 -14.41 2.99 -172.32 -0.52 -14.93 16 18 C -0.25 -6.78 9.59 -15.06 -0.14 -6.92 16 19 H 0.07 1.75 7.89 -52.49 -0.41 1.33 16 20 C 0.00 0.02 4.91 -17.43 -0.09 -0.07 16 21 N -0.90 -25.85 11.19 55.49 0.62 -25.23 16 22 Si 0.90 21.49 29.59 -169.99 -5.03 16.46 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 C 0.15 2.94 6.51 -3.71 -0.02 2.91 16 27 C -0.12 -2.02 5.36 -26.61 -0.14 -2.16 16 28 C -0.11 -0.83 4.67 -26.52 -0.12 -0.95 16 29 C 0.10 0.61 6.98 -3.92 -0.03 0.58 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 34 H 0.10 0.84 7.95 -51.93 -0.41 0.43 16 35 H 0.10 0.86 8.11 -51.93 -0.42 0.44 16 36 H 0.40 3.86 7.37 -40.82 -0.30 3.56 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.04 0.68 7.15 -51.93 -0.37 0.31 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 2.25 6.04 -51.93 -0.31 1.94 16 44 H 0.25 6.99 8.31 -40.82 -0.34 6.66 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 46 H 0.05 1.09 7.94 -51.93 -0.41 0.67 16 47 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.08 0.68 8.12 -51.93 -0.42 0.26 16 50 H 0.10 0.73 7.79 -51.93 -0.40 0.33 16 51 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 52 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 406.85 15.07 6.13 6.13 Total: -1.00 -33.71 406.85 -11.38 -45.09 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -8.95 Total: 0.69 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -2.98 Total: -1.29 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: -0.64 Total: -59.21 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: 0.09 Total: -7.88 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.71 -11.38 -45.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001538658.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.407 kcal (2) G-P(sol) polarization free energy of solvation -33.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds