Wall clock time and date at job start Wed Apr 1 2020 04:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34854 * 125.96624 * 2 1 4 4 N 1.36305 * 106.68720 * 179.89904 * 3 2 1 5 5 C 1.35418 * 107.40353 * 0.33447 * 4 3 2 6 6 N 1.30086 * 108.62662 * 359.81687 * 5 4 3 7 7 C 1.51044 * 123.98339 * 179.85035 * 5 4 3 8 8 C 1.53410 * 108.20738 * 15.94959 * 7 5 4 9 9 H 1.08996 * 109.55664 * 71.12851 * 8 7 5 10 10 C 1.50698 * 109.50612 * 191.25317 * 8 7 5 11 11 O 1.21273 * 120.00436 * 119.75288 * 10 8 7 12 12 N 1.34784 * 119.99883 * 299.75406 * 10 8 7 13 13 C 1.46498 * 120.00119 * 179.97438 * 12 10 8 14 14 C 1.52994 * 109.47249 * 180.02562 * 13 12 10 15 15 C 1.53039 * 109.46005 * 295.02881 * 14 13 12 16 16 C 1.53200 * 109.31472 * 178.59980 * 15 14 13 17 17 N 1.46923 * 108.76335 * 54.65334 * 16 15 14 18 18 C 1.36942 * 120.62990 * 126.40270 * 17 16 15 19 19 H 1.07997 * 120.00132 * 207.66054 * 18 17 16 20 20 C 1.38815 * 119.99524 * 27.66323 * 18 17 16 21 21 N 1.31610 * 120.00038 * 17.37374 * 20 18 17 22 22 Si 1.86797 * 119.99772 * 197.37446 * 20 18 17 23 23 H 1.48499 * 109.47165 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47118 * 119.99906 * 22 20 18 25 25 H 1.48497 * 109.47410 * 240.00297 * 22 20 18 26 26 C 1.46928 * 118.74299 * 306.38857 * 17 16 15 27 27 C 1.53038 * 109.46324 * 174.97383 * 14 13 12 28 28 C 1.53155 * 109.23464 * 311.17170 * 8 7 5 29 29 C 1.46476 * 127.77123 * 180.02562 * 4 3 2 30 30 H 1.08992 * 109.46954 * 269.71316 * 1 2 3 31 31 H 1.09004 * 109.46983 * 149.71678 * 1 2 3 32 32 H 1.08992 * 109.46919 * 29.71675 * 1 2 3 33 33 H 1.08001 * 126.65162 * 0.02562 * 3 2 1 34 34 H 1.09001 * 109.71592 * 135.60897 * 7 5 4 35 35 H 1.08999 * 109.72085 * 256.25401 * 7 5 4 36 36 H 0.96997 * 119.99739 * 0.02562 * 12 10 8 37 37 H 1.09001 * 109.47095 * 300.00115 * 13 12 10 38 38 H 1.09002 * 109.47121 * 59.99904 * 13 12 10 39 39 H 1.08997 * 109.45890 * 55.00025 * 14 13 12 40 40 H 1.08999 * 109.49773 * 298.56622 * 15 14 13 41 41 H 1.09000 * 109.49857 * 58.66374 * 15 14 13 42 42 H 1.08997 * 109.59518 * 294.87140 * 16 15 14 43 43 H 1.08996 * 109.58608 * 174.43417 * 16 15 14 44 44 H 0.97003 * 120.00258 * 179.97438 * 21 20 18 45 45 H 1.09004 * 109.58188 * 293.81975 * 26 17 16 46 46 H 1.08997 * 109.70728 * 173.46228 * 26 17 16 47 47 H 1.08999 * 109.49929 * 301.33954 * 27 14 13 48 48 H 1.09002 * 109.49587 * 61.43009 * 27 14 13 49 49 H 1.08993 * 109.46640 * 309.48904 * 28 8 7 50 50 H 1.08999 * 109.46353 * 189.49916 * 28 8 7 51 51 H 1.08999 * 109.58480 * 317.24958 * 29 4 3 52 52 H 1.09001 * 109.58454 * 77.66589 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2990 1.0915 0.0000 4 7 3.5856 0.6414 0.0023 5 6 3.5413 -0.7120 -0.0039 6 7 2.2957 -1.0870 -0.0058 7 6 4.7655 -1.5968 -0.0070 8 6 5.9745 -0.7438 0.3982 9 1 5.9076 -0.4960 1.4575 10 6 7.2434 -1.5150 0.1408 11 8 8.0732 -1.0781 -0.6281 12 7 7.4560 -2.6904 0.7652 13 6 8.6893 -3.4404 0.5147 14 6 8.6800 -4.7279 1.3410 15 6 8.7136 -4.3781 2.8305 16 6 8.6689 -5.6684 3.6552 17 7 9.7618 -6.5473 3.2172 18 6 10.6566 -7.0522 4.1226 19 1 11.6600 -7.2999 3.8095 20 6 10.2736 -7.2456 5.4428 21 7 8.9967 -7.2776 5.7597 22 14 11.5709 -7.4605 6.7696 23 1 12.9219 -7.3858 6.1577 24 1 11.4257 -6.3846 7.7828 25 1 11.3965 -8.7825 7.4230 26 6 9.8763 -6.8745 1.7894 27 6 9.9070 -5.5707 0.9857 28 6 5.9827 0.5451 -0.4291 29 6 4.8148 1.4381 0.0037 30 1 -0.3633 -0.0051 1.0276 31 1 -0.3633 -0.8875 -0.5182 32 1 -0.3633 0.8925 -0.5094 33 1 1.9764 2.1221 0.0004 34 1 4.6335 -2.4097 0.7070 35 1 4.9215 -2.0053 -1.0055 36 1 6.7921 -3.0400 1.3800 37 1 8.7542 -3.6893 -0.5446 38 1 9.5483 -2.8323 0.7983 39 1 7.7748 -5.2939 1.1213 40 1 9.6307 -3.8337 3.0557 41 1 7.8519 -3.7582 3.0782 42 1 7.7131 -6.1686 3.4998 43 1 8.7920 -5.4310 4.7119 44 1 8.7290 -7.4131 6.6822 45 1 9.0189 -7.4732 1.4819 46 1 10.7948 -7.4341 1.6131 47 1 9.8949 -5.7998 -0.0798 48 1 10.8128 -5.0149 1.2285 49 1 5.8794 0.2990 -1.4858 50 1 6.9226 1.0733 -0.2692 51 1 4.7123 2.2692 -0.6940 52 1 5.0005 1.8215 1.0071 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001538658.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:11 Heat of formation + Delta-G solvation = 4.367960 kcal Electronic energy + Delta-G solvation = -30351.311541 eV Core-core repulsion = 26350.372832 eV Total energy + Delta-G solvation = -4000.938709 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.32739 -41.06750 -39.41505 -37.39467 -36.37040 -34.71724 -34.18951 -32.47404 -32.34132 -31.50089 -30.02102 -28.70162 -27.86759 -25.87598 -24.99593 -24.00857 -23.69488 -22.50323 -21.63126 -21.11392 -20.57239 -20.09704 -18.73688 -18.07191 -17.84872 -17.06810 -16.82611 -16.67393 -16.45733 -15.76979 -15.38004 -15.30514 -15.22107 -15.12980 -14.88252 -14.84914 -14.64164 -14.46576 -14.00298 -13.85875 -13.78466 -13.53820 -13.30404 -13.12981 -13.06098 -12.86344 -12.79763 -12.59612 -12.57006 -12.31120 -12.21644 -12.13255 -11.94523 -11.82913 -11.58868 -11.24647 -11.11714 -10.93618 -10.81830 -10.53488 -10.46740 -10.06626 -9.12692 -8.66498 -7.87093 -5.31145 1.08449 1.44932 1.47291 1.54934 1.57391 1.86035 2.08118 2.14694 2.51282 3.16052 3.27085 3.49008 3.51112 3.59592 3.72436 3.86725 3.96640 4.00275 4.05566 4.10171 4.14843 4.25524 4.35301 4.46624 4.51927 4.55037 4.56993 4.63898 4.71347 4.73920 4.75768 4.82638 4.86689 4.91611 4.94578 5.03776 5.05688 5.07242 5.17540 5.19381 5.26828 5.32033 5.38678 5.43101 5.43879 5.57459 5.67622 5.81237 5.88989 6.24531 6.40423 6.51635 7.16528 7.16638 7.18783 7.89163 8.39219 9.18949 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015669 B = 0.002025 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.579264 B =13821.892380 C =14656.535234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.040 4.040 3 C -0.046 4.046 4 N -0.455 5.455 5 C 0.195 3.805 6 N -0.526 5.526 7 C -0.019 4.019 8 C -0.102 4.102 9 H 0.122 0.878 10 C 0.523 3.477 11 O -0.575 6.575 12 N -0.716 5.716 13 C 0.136 3.864 14 C -0.080 4.080 15 C -0.120 4.120 16 C 0.175 3.825 17 N -0.612 5.612 18 C -0.260 4.260 19 H 0.064 0.936 20 C -0.052 4.052 21 N -0.934 5.934 22 Si 0.963 3.037 23 H -0.268 1.268 24 H -0.290 1.290 25 H -0.293 1.293 26 C 0.140 3.860 27 C -0.115 4.115 28 C -0.111 4.111 29 C 0.104 3.896 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.207 0.793 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.412 0.588 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.076 0.924 40 H 0.046 0.954 41 H 0.071 0.929 42 H -0.002 1.002 43 H 0.050 0.950 44 H 0.249 0.751 45 H 0.015 0.985 46 H 0.051 0.949 47 H 0.083 0.917 48 H 0.055 0.945 49 H 0.070 0.930 50 H 0.105 0.895 51 H 0.118 0.882 52 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.194 21.105 -13.469 27.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.168 4.168 3 C -0.179 4.179 4 N -0.138 5.138 5 C -0.068 4.068 6 N -0.247 5.247 7 C -0.058 4.058 8 C -0.124 4.124 9 H 0.140 0.860 10 C 0.310 3.690 11 O -0.455 6.455 12 N -0.367 5.367 13 C 0.012 3.988 14 C -0.099 4.099 15 C -0.159 4.159 16 C 0.049 3.951 17 N -0.336 5.336 18 C -0.390 4.390 19 H 0.082 0.918 20 C -0.247 4.247 21 N -0.580 5.580 22 Si 0.792 3.208 23 H -0.192 1.192 24 H -0.216 1.216 25 H -0.220 1.220 26 C 0.014 3.986 27 C -0.154 4.154 28 C -0.149 4.149 29 C -0.017 4.017 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.108 0.892 33 H 0.224 0.776 34 H 0.125 0.875 35 H 0.108 0.892 36 H 0.248 0.752 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.065 0.935 41 H 0.090 0.910 42 H 0.016 0.984 43 H 0.068 0.932 44 H 0.058 0.942 45 H 0.033 0.967 46 H 0.070 0.930 47 H 0.102 0.898 48 H 0.074 0.926 49 H 0.089 0.911 50 H 0.123 0.877 51 H 0.136 0.864 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.778 20.673 -13.876 27.543 hybrid contribution 0.507 -0.067 1.360 1.453 sum -11.271 20.606 -12.516 26.614 Atomic orbital electron populations 1.20043 0.86338 1.03082 1.02513 1.21369 0.97814 0.88557 1.09061 1.22829 0.82425 1.01407 1.11241 1.45588 1.07573 1.07041 1.53560 1.23234 0.94539 0.82692 1.06317 1.69895 1.00955 1.32232 1.21611 1.20095 0.85726 0.95570 1.04418 1.21396 0.91105 0.95906 1.03948 0.86021 1.20618 0.87975 0.80966 0.79452 1.90697 1.47907 1.69294 1.37596 1.46058 1.22318 1.21684 1.46653 1.21305 0.86416 0.91640 0.99422 1.21167 0.99434 0.94912 0.94367 1.22033 1.00883 0.97832 0.95117 1.20613 0.88487 0.88526 0.97467 1.44357 1.32480 1.54073 1.02699 1.19537 0.92220 1.36652 0.90614 0.91827 1.25751 0.97472 1.00882 1.00642 1.70180 1.15410 1.54848 1.17593 0.85264 0.79425 0.76756 0.79361 1.19240 1.21646 1.22016 1.21052 0.98474 0.95062 0.83967 1.21851 0.97316 0.96487 0.99785 1.21681 0.98976 0.94184 1.00077 1.22271 0.80027 0.94119 1.05239 0.91168 0.92407 0.89174 0.77590 0.87526 0.89168 0.75158 0.91205 0.92426 0.90581 0.93545 0.91035 0.98366 0.93151 0.94169 0.96689 0.93037 0.89808 0.92634 0.91086 0.87657 0.86425 0.87543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.42 71.24 0.74 -0.17 16 2 C -0.04 -0.81 7.10 41.41 0.29 -0.52 16 3 C -0.05 -0.70 11.55 83.22 0.96 0.26 16 4 N -0.45 -7.11 3.13 -513.83 -1.61 -8.72 16 5 C 0.19 4.04 7.65 138.24 1.06 5.10 16 6 N -0.53 -13.53 11.24 -175.68 -1.98 -15.51 16 7 C -0.02 -0.31 5.47 30.09 0.16 -0.15 16 8 C -0.10 -1.47 2.55 -11.35 -0.03 -1.50 16 9 H 0.12 1.41 8.12 -2.39 -0.02 1.39 16 10 C 0.52 10.78 7.13 87.66 0.63 11.40 16 11 O -0.58 -16.03 15.83 -3.01 -0.05 -16.08 16 12 N -0.72 -14.34 5.18 -463.07 -2.40 -16.74 16 13 C 0.14 3.23 5.06 86.38 0.44 3.67 16 14 C -0.08 -2.23 2.19 -10.77 -0.02 -2.25 16 15 C -0.12 -4.03 5.25 30.67 0.16 -3.87 16 16 C 0.17 8.07 5.31 86.37 0.46 8.53 16 17 N -0.61 -30.15 2.99 -699.09 -2.09 -32.25 16 18 C -0.26 -14.25 9.59 84.03 0.81 -13.45 16 19 H 0.06 3.43 7.89 -2.91 -0.02 3.41 16 20 C -0.05 -2.91 4.91 84.86 0.42 -2.50 16 21 N -0.93 -54.95 11.19 21.65 0.24 -54.71 16 22 Si 0.96 44.87 29.59 68.60 2.03 46.90 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 24 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 25 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 26 C 0.14 5.57 6.51 86.36 0.56 6.14 16 27 C -0.11 -3.51 5.36 30.67 0.16 -3.35 16 28 C -0.11 -1.36 4.67 30.73 0.14 -1.22 16 29 C 0.10 0.90 6.98 86.47 0.60 1.50 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.21 1.51 8.06 -2.91 -0.02 1.48 16 34 H 0.11 1.63 7.95 -2.39 -0.02 1.61 16 35 H 0.09 1.56 8.11 -2.39 -0.02 1.54 16 36 H 0.41 6.93 7.37 -92.71 -0.68 6.25 16 37 H 0.07 1.63 8.14 -2.39 -0.02 1.62 16 38 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.07 2.02 7.15 -2.39 -0.02 2.00 16 42 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 43 H 0.05 2.69 6.04 -2.39 -0.01 2.68 16 44 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 45 H 0.02 0.61 8.14 -2.38 -0.02 0.59 16 46 H 0.05 2.04 7.94 -2.39 -0.02 2.02 16 47 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 48 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 49 H 0.07 1.06 8.12 -2.39 -0.02 1.04 16 50 H 0.11 1.26 7.79 -2.39 -0.02 1.25 16 51 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 52 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -75.27 406.85 1.91 -73.36 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.22 Total: 16.10 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 7.55 Total: 7.64 kcal Atomic # 7 Polarization: -120.08 SS G_CDS: -7.84 Total: -127.92 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.05 Total: -16.08 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -75.27 1.91 -73.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001538658.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.725 kcal (2) G-P(sol) polarization free energy of solvation -75.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds