Wall clock time and date at job start Wed Apr 1 2020 04:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34672 * 126.59500 * 2 1 4 4 N 1.34129 * 108.02202 * 180.28277 * 3 2 1 5 5 C 1.30498 * 109.25378 * 359.73124 * 4 3 2 6 6 N 1.35043 * 108.70469 * 0.02562 * 5 4 3 7 7 C 1.46504 * 126.39999 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.46836 * 265.02395 * 7 6 5 9 9 O 1.21276 * 120.00308 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99847 * 180.02562 * 8 7 6 11 11 C 1.46918 * 120.63177 * 179.97438 * 10 8 7 12 12 C 1.53188 * 108.78154 * 233.58781 * 11 10 8 13 13 C 1.53040 * 109.31008 * 305.36705 * 12 11 10 14 14 C 1.53004 * 109.45974 * 181.38231 * 13 12 11 15 15 H 1.09002 * 109.87342 * 60.97066 * 14 13 12 16 16 C 1.54321 * 109.88450 * 299.79117 * 14 13 12 17 17 C 1.55156 * 102.94628 * 218.39076 * 16 14 13 18 18 C 1.54690 * 101.67411 * 35.33580 * 17 16 14 19 19 N 1.47023 * 109.88152 * 181.98287 * 14 13 12 20 20 C 1.36929 * 125.65251 * 298.32157 * 19 14 13 21 21 H 1.07999 * 120.00110 * 345.13460 * 20 19 14 22 22 C 1.38816 * 120.00564 * 165.40877 * 20 19 14 23 23 N 1.31624 * 119.99565 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00411 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47219 * 90.00223 * 24 22 20 26 26 H 1.48504 * 109.47088 * 210.00202 * 24 22 20 27 27 H 1.48497 * 109.47129 * 329.99837 * 24 22 20 28 28 C 1.53044 * 109.54039 * 61.36484 * 13 12 11 29 29 C 1.46924 * 120.63054 * 359.97438 * 10 8 7 30 30 H 1.08997 * 109.47298 * 270.16752 * 1 2 3 31 31 H 1.09007 * 109.47133 * 30.16466 * 1 2 3 32 32 H 1.08997 * 109.47308 * 150.16542 * 1 2 3 33 33 H 1.07994 * 125.98781 * 359.97438 * 3 2 1 34 34 H 1.08008 * 125.65233 * 179.97438 * 5 4 3 35 35 H 1.09001 * 109.46943 * 145.02556 * 7 6 5 36 36 H 1.08995 * 109.46959 * 25.01964 * 7 6 5 37 37 H 1.09007 * 109.59002 * 113.79979 * 11 10 8 38 38 H 1.09005 * 109.70625 * 353.44933 * 11 10 8 39 39 H 1.08998 * 109.50002 * 185.41541 * 12 11 10 40 40 H 1.08999 * 109.49573 * 65.31562 * 12 11 10 41 41 H 1.08997 * 109.46168 * 301.35462 * 13 12 11 42 42 H 1.09004 * 110.71840 * 336.75612 * 16 14 13 43 43 H 1.09002 * 110.72079 * 100.02375 * 16 14 13 44 44 H 1.08996 * 111.00567 * 153.57595 * 17 16 14 45 45 H 1.09000 * 111.00394 * 277.39278 * 17 16 14 46 46 H 1.09007 * 110.38941 * 204.36408 * 18 17 16 47 47 H 1.09004 * 110.23900 * 82.11406 * 18 17 16 48 48 H 0.96996 * 119.99945 * 179.97438 * 23 22 20 49 49 H 1.08997 * 109.49475 * 58.58287 * 28 13 12 50 50 H 1.09000 * 109.49803 * 178.68500 * 28 13 12 51 51 H 1.09000 * 109.58841 * 246.20045 * 29 10 8 52 52 H 1.09002 * 109.58891 * 6.48031 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3098 1.0812 0.0000 4 7 3.5812 0.6540 -0.0063 5 6 3.5967 -0.6508 -0.0044 6 7 2.3229 -1.0991 0.0026 7 6 1.8942 -2.5000 0.0074 8 6 1.6225 -2.9470 -1.4059 9 8 1.7718 -2.1716 -2.3264 10 7 1.2127 -4.2081 -1.6468 11 6 0.9433 -4.6584 -3.0191 12 6 -0.4691 -5.2487 -3.0762 13 6 -0.6023 -6.3455 -2.0172 14 6 -2.0009 -6.9612 -2.0942 15 1 -2.1554 -7.4084 -3.0762 16 6 -3.0671 -5.8762 -1.8343 17 6 -4.1308 -6.6287 -0.9920 18 6 -3.2475 -7.5765 -0.1468 19 7 -2.1552 -7.9839 -1.0493 20 6 -1.4116 -9.1281 -0.9364 21 1 -0.8079 -9.4639 -1.7665 22 6 -1.4381 -9.8597 0.2431 23 7 -2.1777 -9.4531 1.2531 24 14 -0.4231 -11.4202 0.3973 25 1 0.9230 -11.0848 0.9269 26 1 -1.0999 -12.3612 1.3256 27 1 -0.2856 -12.0553 -0.9380 28 6 -0.3862 -5.7436 -0.6268 29 6 1.0269 -5.1587 -0.5421 30 1 -0.3634 0.0030 1.0276 31 1 -0.3634 0.8886 -0.5164 32 1 -0.3634 -0.8914 -0.5112 33 1 1.9865 2.1117 -0.0004 34 1 4.4818 -1.2699 -0.0087 35 1 0.9856 -2.5999 0.6011 36 1 2.6805 -3.1190 0.4394 37 1 1.6694 -5.4202 -3.3030 38 1 1.0140 -3.8132 -3.7039 39 1 -0.6463 -5.6735 -4.0642 40 1 -1.1996 -4.4637 -2.8808 41 1 0.1449 -7.1180 -2.1984 42 1 -2.6432 -5.0467 -1.2683 43 1 -3.4963 -5.5246 -2.7726 44 1 -4.6857 -5.9386 -0.3566 45 1 -4.8063 -7.1961 -1.6323 46 1 -3.8212 -8.4470 0.1716 47 1 -2.8475 -7.0476 0.7183 48 1 -2.1965 -9.9645 2.0771 49 1 -1.1175 -4.9539 -0.4546 50 1 -0.5043 -6.5206 0.1284 51 1 1.7598 -5.9614 -0.6235 52 1 1.1545 -4.6427 0.4095 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004485756.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:55 Heat of formation + Delta-G solvation = 36.773785 kcal Electronic energy + Delta-G solvation = -31909.066070 eV Core-core repulsion = 27909.532583 eV Total energy + Delta-G solvation = -3999.533487 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.11223 -41.31761 -39.86697 -37.75104 -35.14952 -34.69928 -33.75896 -32.83855 -32.09009 -31.15247 -29.65518 -28.35939 -27.31879 -26.50613 -25.21163 -24.20157 -22.79092 -22.40772 -21.88100 -21.29989 -20.42131 -19.60226 -18.74515 -18.33915 -17.98607 -16.95306 -16.72837 -16.67566 -16.29736 -15.92330 -15.69130 -15.36640 -15.25255 -14.94509 -14.79580 -14.44456 -14.26623 -13.99784 -13.93552 -13.85101 -13.60820 -13.52596 -13.35134 -13.26936 -13.18133 -13.00113 -12.79741 -12.76476 -12.60833 -12.16132 -12.00626 -11.82479 -11.77317 -11.49389 -11.41611 -11.18604 -11.15512 -10.94839 -10.90834 -10.58293 -10.41253 -9.72683 -9.22256 -8.68142 -7.78791 -5.12834 0.97611 1.39891 1.48000 1.50146 1.56907 1.64170 2.07927 2.22471 2.54069 3.28925 3.40041 3.67670 3.70980 3.76683 3.84026 3.88533 3.96474 4.05343 4.15266 4.18318 4.25439 4.26179 4.27054 4.35370 4.42701 4.52531 4.55574 4.64392 4.73262 4.80034 4.80562 4.84546 4.90633 4.94079 5.02643 5.06139 5.10622 5.12689 5.21362 5.28014 5.36046 5.41775 5.54936 5.57638 5.66639 5.73340 5.75796 5.82270 5.86525 6.17591 6.32094 6.33471 6.97363 7.11481 7.19944 7.89103 8.57081 9.32140 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014943 B = 0.002773 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.345231 B =10095.722725 C =10559.680050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.018 4.018 3 C -0.058 4.058 4 N -0.530 5.530 5 C 0.180 3.820 6 N -0.444 5.444 7 C 0.084 3.916 8 C 0.500 3.500 9 O -0.572 6.572 10 N -0.596 5.596 11 C 0.116 3.884 12 C -0.115 4.115 13 C -0.083 4.083 14 C 0.157 3.843 15 H 0.023 0.977 16 C -0.114 4.114 17 C -0.140 4.140 18 C 0.181 3.819 19 N -0.607 5.607 20 C -0.222 4.222 21 H 0.071 0.929 22 C -0.055 4.055 23 N -0.943 5.943 24 Si 0.961 3.039 25 H -0.285 1.285 26 H -0.301 1.301 27 H -0.276 1.276 28 C -0.110 4.110 29 C 0.109 3.891 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.056 0.944 33 H 0.179 0.821 34 H 0.229 0.771 35 H 0.143 0.857 36 H 0.158 0.842 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.049 0.951 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.055 0.945 46 H 0.024 0.976 47 H 0.002 0.998 48 H 0.244 0.756 49 H 0.064 0.936 50 H 0.058 0.942 51 H 0.075 0.925 52 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.264 14.061 -2.357 14.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.132 4.132 3 C -0.204 4.204 4 N -0.248 5.248 5 C -0.102 4.102 6 N -0.127 5.127 7 C -0.041 4.041 8 C 0.287 3.713 9 O -0.452 6.452 10 N -0.329 5.329 11 C -0.007 4.007 12 C -0.154 4.154 13 C -0.104 4.104 14 C 0.051 3.949 15 H 0.040 0.960 16 C -0.151 4.151 17 C -0.179 4.179 18 C 0.056 3.944 19 N -0.331 5.331 20 C -0.351 4.351 21 H 0.088 0.912 22 C -0.249 4.249 23 N -0.592 5.592 24 Si 0.791 3.209 25 H -0.212 1.212 26 H -0.228 1.228 27 H -0.202 1.202 28 C -0.148 4.148 29 C -0.013 4.013 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.075 0.925 33 H 0.196 0.804 34 H 0.245 0.755 35 H 0.160 0.840 36 H 0.175 0.825 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.067 0.933 42 H 0.095 0.905 43 H 0.098 0.902 44 H 0.097 0.903 45 H 0.074 0.926 46 H 0.043 0.957 47 H 0.020 0.980 48 H 0.053 0.947 49 H 0.083 0.917 50 H 0.077 0.923 51 H 0.093 0.907 52 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.024 14.658 -2.703 15.729 hybrid contribution -0.239 -2.011 0.220 2.037 sum 4.786 12.647 -2.483 13.748 Atomic orbital electron populations 1.20278 0.85591 1.03660 1.03658 1.21665 0.95745 0.86662 1.09175 1.22341 0.88422 0.99458 1.10193 1.70204 1.23470 1.10176 1.20962 1.25419 0.88082 0.91731 1.04993 1.45057 1.07254 1.06098 1.54326 1.22002 1.06801 0.80530 0.94779 1.21063 0.76913 0.81574 0.91724 1.90752 1.53804 1.53625 1.46986 1.48183 1.65154 1.10737 1.08818 1.21591 0.96978 0.99476 0.82637 1.21868 0.96042 0.97868 0.99615 1.21384 0.98093 0.96132 0.94752 1.21141 0.93849 0.88728 0.91159 0.95964 1.22605 0.95364 0.97014 1.00130 1.22866 0.97475 0.98545 0.98998 1.21097 0.87960 0.94474 0.90844 1.44650 1.37757 1.20329 1.30353 1.19139 1.19988 0.99206 0.96809 0.91166 1.25465 1.01403 1.02190 0.95818 1.70119 1.43951 1.40738 1.04387 0.85344 0.78473 0.79984 0.77119 1.21152 1.22836 1.20169 1.21695 0.95688 0.99637 0.97768 1.21953 0.97561 0.92483 0.89267 0.89066 0.89059 0.92460 0.80395 0.75517 0.83969 0.82461 0.90939 0.90130 0.90161 0.91331 0.93270 0.90461 0.90157 0.90331 0.92597 0.95713 0.97952 0.94657 0.91736 0.92295 0.90671 0.87359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.17 10.08 71.23 0.72 -0.45 16 2 C -0.02 -0.39 6.95 40.95 0.28 -0.11 16 3 C -0.06 -1.42 11.79 83.52 0.98 -0.44 16 4 N -0.53 -14.56 11.25 -200.31 -2.25 -16.81 16 5 C 0.18 3.99 12.56 180.26 2.26 6.25 16 6 N -0.44 -9.10 2.24 -518.61 -1.16 -10.26 16 7 C 0.08 1.25 4.62 85.63 0.40 1.65 16 8 C 0.50 10.88 7.77 87.66 0.68 11.56 16 9 O -0.57 -17.54 15.84 -3.02 -0.05 -17.59 16 10 N -0.60 -12.29 2.97 -818.98 -2.43 -14.72 16 11 C 0.12 2.54 6.43 86.36 0.55 3.10 16 12 C -0.12 -2.62 5.10 30.67 0.16 -2.47 16 13 C -0.08 -2.41 1.91 -10.76 -0.02 -2.43 16 14 C 0.16 5.47 2.95 45.34 0.13 5.60 16 15 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 16 C -0.11 -3.26 5.22 31.78 0.17 -3.09 16 17 C -0.14 -4.67 7.07 31.91 0.23 -4.44 16 18 C 0.18 8.09 5.40 86.78 0.47 8.56 16 19 N -0.61 -27.29 2.28 -668.66 -1.52 -28.82 16 20 C -0.22 -11.23 9.84 84.04 0.83 -10.40 16 21 H 0.07 3.50 7.83 -2.91 -0.02 3.48 16 22 C -0.05 -2.89 5.47 84.86 0.46 -2.43 16 23 N -0.94 -52.63 10.59 21.65 0.23 -52.40 16 24 Si 0.96 43.06 29.55 68.60 2.03 45.09 16 25 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 26 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 27 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 28 C -0.11 -3.00 4.93 30.66 0.15 -2.85 16 29 C 0.11 2.14 6.34 86.35 0.55 2.69 16 30 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.06 0.98 7.95 -2.39 -0.02 0.96 16 33 H 0.18 3.57 8.06 -2.91 -0.02 3.55 16 34 H 0.23 3.35 8.06 -2.91 -0.02 3.32 16 35 H 0.14 1.54 7.58 -2.39 -0.02 1.53 16 36 H 0.16 1.29 7.93 -2.39 -0.02 1.27 16 37 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 38 H 0.08 1.94 7.01 -2.38 -0.02 1.92 16 39 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.07 1.54 7.11 -2.39 -0.02 1.52 16 41 H 0.05 1.63 8.04 -2.39 -0.02 1.61 16 42 H 0.08 2.05 5.49 -2.38 -0.01 2.04 16 43 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.02 1.29 6.95 -2.38 -0.02 1.27 16 47 H 0.00 0.12 8.06 -2.38 -0.02 0.10 16 48 H 0.24 13.47 8.31 -92.71 -0.77 12.70 16 49 H 0.06 1.67 6.13 -2.39 -0.01 1.66 16 50 H 0.06 2.17 7.53 -2.39 -0.02 2.15 16 51 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 52 H 0.11 1.44 5.93 -2.39 -0.01 1.42 16 Total: -1.00 -71.81 401.72 4.74 -67.07 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.90 Total: 18.13 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 9.00 Total: 10.30 kcal Atomic # 7 Polarization: -115.86 SS G_CDS: -7.14 Total: -123.00 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.05 Total: -17.59 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -71.81 4.74 -67.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004485756.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.842 kcal (2) G-P(sol) polarization free energy of solvation -71.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds