Wall clock time and date at job start Wed Apr 1 2020 04:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34669 * 126.59482 * 2 1 4 4 N 1.34126 * 108.01926 * 179.87532 * 3 2 1 5 5 C 1.30498 * 109.26115 * 0.39217 * 4 3 2 6 6 N 1.35047 * 108.69823 * 359.76086 * 5 4 3 7 7 C 1.46493 * 126.40007 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.47234 * 264.99845 * 7 6 5 9 9 O 1.21287 * 119.99897 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00118 * 179.97438 * 8 7 6 11 11 C 1.46920 * 120.63170 * 359.72176 * 10 8 7 12 12 C 1.53622 * 108.54549 * 126.36652 * 11 10 8 13 13 C 1.53044 * 109.24202 * 54.85880 * 12 11 10 14 14 C 1.52998 * 109.44987 * 178.50003 * 13 12 11 15 15 H 1.08995 * 109.87049 * 297.96780 * 14 13 12 16 16 C 1.54317 * 109.88444 * 58.98461 * 14 13 12 17 17 C 1.55166 * 102.94301 * 141.61007 * 16 14 13 18 18 C 1.54912 * 101.57747 * 324.49713 * 17 16 14 19 19 N 1.47026 * 109.88247 * 176.79369 * 14 13 12 20 20 C 1.36942 * 125.64677 * 61.61531 * 19 14 13 21 21 H 1.08001 * 119.99995 * 11.94686 * 20 19 14 22 22 C 1.38805 * 119.99964 * 191.93897 * 20 19 14 23 23 N 1.31617 * 120.00078 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00092 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47250 * 60.00106 * 24 22 20 26 26 H 1.48495 * 109.47497 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47061 * 300.00008 * 24 22 20 28 28 C 1.53046 * 109.53574 * 298.51011 * 13 12 11 29 29 C 1.46930 * 120.62780 * 179.97438 * 10 8 7 30 30 H 1.09001 * 109.46930 * 269.69033 * 1 2 3 31 31 H 1.08999 * 109.47000 * 149.68629 * 1 2 3 32 32 H 1.08996 * 109.46686 * 29.68943 * 1 2 3 33 33 H 1.07991 * 125.98579 * 0.02562 * 3 2 1 34 34 H 1.07998 * 125.65737 * 179.73488 * 5 4 3 35 35 H 1.09000 * 109.47450 * 24.99923 * 7 6 5 36 36 H 1.09001 * 109.47236 * 144.99847 * 7 6 5 37 37 H 1.09002 * 109.58934 * 246.19953 * 11 10 8 38 38 H 1.09002 * 109.58994 * 6.62474 * 11 10 8 39 39 H 1.09000 * 109.63515 * 294.86789 * 12 11 10 40 40 H 1.09002 * 109.43437 * 174.72375 * 12 11 10 41 41 H 1.08997 * 109.46135 * 58.53028 * 13 12 11 42 42 H 1.08995 * 110.72363 * 259.97069 * 16 14 13 43 43 H 1.09003 * 110.72091 * 23.06878 * 16 14 13 44 44 H 1.08993 * 110.99884 * 82.57157 * 17 16 14 45 45 H 1.09001 * 111.00421 * 206.42686 * 17 16 14 46 46 H 1.09003 * 110.36205 * 155.84405 * 18 17 16 47 47 H 1.08996 * 110.36619 * 278.05743 * 18 17 16 48 48 H 0.97009 * 120.00157 * 180.02562 * 23 22 20 49 49 H 1.08994 * 109.49688 * 301.41417 * 28 13 12 50 50 H 1.09001 * 109.49717 * 181.31706 * 28 13 12 51 51 H 1.09001 * 109.59261 * 353.37423 * 29 10 8 52 52 H 1.09009 * 109.58524 * 113.65838 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3099 1.0812 0.0000 4 7 3.5813 0.6540 0.0028 5 6 3.5969 -0.6509 -0.0039 6 7 2.3230 -1.0991 -0.0059 7 6 1.8943 -2.4999 -0.0136 8 6 1.6283 -2.9362 -1.4313 9 8 1.7822 -2.1540 -2.3454 10 7 1.2204 -4.1957 -1.6835 11 6 1.0365 -5.1567 -0.5875 12 6 -0.3815 -5.7401 -0.6820 13 6 -0.5915 -6.3316 -2.0777 14 6 -1.9894 -6.9474 -2.1650 15 1 -2.0818 -7.7603 -1.4449 16 6 -3.0564 -5.8697 -1.8797 17 6 -4.1864 -6.2256 -2.8818 18 6 -3.3736 -6.7218 -4.1036 19 7 -2.2301 -7.4506 -3.5254 20 6 -1.5107 -8.4332 -4.1517 21 1 -0.8188 -9.0397 -3.5862 22 6 -1.6708 -8.6496 -5.5134 23 7 -2.5137 -7.9102 -6.2027 24 14 -0.6901 -9.9904 -6.3677 25 1 -1.0107 -11.3048 -5.7554 26 1 -1.0406 -10.0173 -7.8105 27 1 0.7612 -9.7147 -6.2166 28 6 -0.4547 -5.2266 -3.1278 29 6 0.9566 -4.6355 -3.0604 30 1 -0.3633 -0.0056 1.0277 31 1 -0.3633 -0.8872 -0.5187 32 1 -0.3632 0.8927 -0.5090 33 1 1.9866 2.1116 0.0004 34 1 4.4819 -1.2699 -0.0077 35 1 2.6787 -3.1224 0.4170 36 1 0.9833 -2.6043 0.5757 37 1 1.7707 -5.9574 -0.6764 38 1 1.1610 -4.6486 0.3688 39 1 -1.1141 -4.9523 -0.5067 40 1 -0.5022 -6.5230 0.0668 41 1 0.1569 -7.1023 -2.2620 42 1 -3.4143 -5.9436 -0.8529 43 1 -2.6610 -4.8735 -2.0781 44 1 -4.8226 -7.0181 -2.4877 45 1 -4.7751 -5.3441 -3.1360 46 1 -3.9790 -7.3902 -4.7158 47 1 -3.0259 -5.8760 -4.6967 48 1 -2.6260 -8.0617 -7.1543 49 1 -1.1866 -4.4437 -2.9294 50 1 -0.6275 -5.6440 -4.1198 51 1 1.0283 -3.7834 -3.7364 52 1 1.6860 -5.3928 -3.3482 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004485757.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:59 Heat of formation + Delta-G solvation = 36.006612 kcal Electronic energy + Delta-G solvation = -31840.017890 eV Core-core repulsion = 27840.451136 eV Total energy + Delta-G solvation = -3999.566754 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.09667 -41.30023 -39.86189 -37.75338 -35.12300 -34.71488 -33.72934 -32.83604 -32.12946 -31.20637 -29.49630 -28.42774 -27.31011 -26.52758 -25.21735 -24.18297 -22.76644 -22.40757 -21.89750 -21.35503 -20.38203 -19.59892 -18.74757 -18.30926 -18.03283 -16.94682 -16.73313 -16.63632 -16.36237 -15.87862 -15.71542 -15.36807 -15.22123 -14.93300 -14.78114 -14.44945 -14.26718 -14.00970 -13.93501 -13.83580 -13.59160 -13.49113 -13.37559 -13.23196 -13.19228 -13.03163 -12.82853 -12.75673 -12.58781 -12.16016 -12.07603 -11.83044 -11.74977 -11.47558 -11.45640 -11.19048 -11.14906 -10.93572 -10.90255 -10.61370 -10.39585 -9.71754 -9.21341 -8.72851 -7.79916 -5.14252 0.97316 1.43137 1.45355 1.46572 1.52654 1.67888 2.08660 2.23705 2.51739 3.32954 3.38473 3.67543 3.75458 3.79819 3.88176 3.90032 3.95872 4.03158 4.11927 4.23090 4.24029 4.27166 4.28496 4.36721 4.39858 4.53096 4.55961 4.70066 4.74561 4.78448 4.82053 4.86135 4.88894 4.91741 5.03939 5.07138 5.10629 5.17942 5.23577 5.27602 5.29968 5.42207 5.54506 5.56585 5.68245 5.70680 5.74616 5.82923 5.84040 6.20161 6.30950 6.38214 7.01226 7.12838 7.16633 7.87737 8.54381 9.30140 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017297 B = 0.002661 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.360164 B =10519.945716 C =11138.596059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.017 4.017 3 C -0.061 4.061 4 N -0.532 5.532 5 C 0.181 3.819 6 N -0.445 5.445 7 C 0.090 3.910 8 C 0.493 3.507 9 O -0.582 6.582 10 N -0.597 5.597 11 C 0.102 3.898 12 C -0.122 4.122 13 C -0.085 4.085 14 C 0.156 3.844 15 H 0.036 0.964 16 C -0.112 4.112 17 C -0.140 4.140 18 C 0.177 3.823 19 N -0.609 5.609 20 C -0.218 4.218 21 H 0.078 0.922 22 C -0.065 4.065 23 N -0.950 5.950 24 Si 0.964 3.036 25 H -0.278 1.278 26 H -0.302 1.302 27 H -0.279 1.279 28 C -0.100 4.100 29 C 0.122 3.878 30 H 0.097 0.903 31 H 0.056 0.944 32 H 0.085 0.915 33 H 0.176 0.824 34 H 0.230 0.770 35 H 0.166 0.834 36 H 0.153 0.847 37 H 0.083 0.917 38 H 0.126 0.874 39 H 0.076 0.924 40 H 0.098 0.902 41 H 0.049 0.951 42 H 0.092 0.908 43 H 0.069 0.931 44 H 0.061 0.939 45 H 0.073 0.927 46 H 0.031 0.969 47 H -0.013 1.013 48 H 0.242 0.758 49 H 0.054 0.946 50 H 0.042 0.958 51 H 0.061 0.939 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.259 8.882 20.909 23.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.131 4.131 3 C -0.207 4.207 4 N -0.251 5.251 5 C -0.101 4.101 6 N -0.128 5.128 7 C -0.035 4.035 8 C 0.281 3.719 9 O -0.462 6.462 10 N -0.329 5.329 11 C -0.019 4.019 12 C -0.160 4.160 13 C -0.105 4.105 14 C 0.050 3.950 15 H 0.054 0.946 16 C -0.150 4.150 17 C -0.179 4.179 18 C 0.052 3.948 19 N -0.333 5.333 20 C -0.348 4.348 21 H 0.096 0.904 22 C -0.258 4.258 23 N -0.599 5.599 24 Si 0.794 3.206 25 H -0.204 1.204 26 H -0.229 1.229 27 H -0.206 1.206 28 C -0.139 4.139 29 C -0.002 4.002 30 H 0.116 0.884 31 H 0.075 0.925 32 H 0.104 0.896 33 H 0.193 0.807 34 H 0.246 0.754 35 H 0.183 0.817 36 H 0.171 0.829 37 H 0.101 0.899 38 H 0.144 0.856 39 H 0.095 0.905 40 H 0.116 0.884 41 H 0.067 0.933 42 H 0.111 0.889 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.092 0.908 46 H 0.049 0.951 47 H 0.005 0.995 48 H 0.051 0.949 49 H 0.072 0.928 50 H 0.060 0.940 51 H 0.079 0.921 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.006 9.553 20.243 23.176 hybrid contribution -0.273 -1.398 -1.976 2.435 sum 5.733 8.155 18.268 20.811 Atomic orbital electron populations 1.20281 0.85529 1.03513 1.03843 1.21656 0.95741 0.86717 1.09019 1.22328 0.88530 0.99485 1.10361 1.70192 1.23476 1.10375 1.21019 1.25437 0.88165 0.91683 1.04862 1.45063 1.07129 1.06295 1.54323 1.22053 1.07390 0.80379 0.93714 1.21379 0.76832 0.81532 0.92206 1.90777 1.53747 1.53505 1.48134 1.48213 1.65293 1.11080 1.08361 1.22262 0.97672 0.92539 0.89454 1.22042 0.96660 1.01396 0.95936 1.21432 0.98128 0.96045 0.94919 1.21216 0.93618 0.93943 0.86196 0.94642 1.22609 0.94762 0.98174 0.99418 1.22889 0.97565 1.00372 0.97059 1.21176 0.88049 0.93025 0.92556 1.44705 1.34213 1.41324 1.13087 1.19199 1.17100 1.07894 0.90618 0.90428 1.25527 1.01252 1.01820 0.97213 1.70145 1.40127 1.43040 1.06625 0.85362 0.78680 0.79547 0.77047 1.20439 1.22868 1.20554 1.21592 0.94797 0.97558 0.99933 1.21397 0.96903 0.98595 0.83262 0.88436 0.92487 0.89598 0.80671 0.75382 0.81652 0.82940 0.89859 0.85571 0.90548 0.88372 0.93257 0.88913 0.91226 0.91978 0.90846 0.95069 0.99479 0.94858 0.92787 0.93969 0.92066 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.09 10.08 71.24 0.72 -0.37 16 2 C -0.02 -0.35 6.95 40.95 0.28 -0.06 16 3 C -0.06 -1.48 11.79 83.52 0.98 -0.50 16 4 N -0.53 -14.38 11.25 -200.32 -2.25 -16.63 16 5 C 0.18 3.80 12.56 180.26 2.26 6.06 16 6 N -0.44 -8.33 2.24 -518.62 -1.16 -9.49 16 7 C 0.09 1.02 4.62 85.63 0.40 1.41 16 8 C 0.49 10.67 7.77 87.66 0.68 11.36 16 9 O -0.58 -19.47 15.84 -3.05 -0.05 -19.52 16 10 N -0.60 -12.22 2.97 -818.12 -2.43 -14.65 16 11 C 0.10 1.21 6.37 86.51 0.55 1.76 16 12 C -0.12 -1.99 5.09 30.82 0.16 -1.83 16 13 C -0.08 -2.42 1.91 -10.76 -0.02 -2.44 16 14 C 0.16 5.34 2.97 45.34 0.13 5.48 16 15 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 16 C -0.11 -3.18 5.21 31.78 0.17 -3.01 16 17 C -0.14 -4.84 7.09 31.99 0.23 -4.61 16 18 C 0.18 8.42 5.46 86.86 0.47 8.89 16 19 N -0.61 -28.45 2.23 -668.28 -1.49 -29.94 16 20 C -0.22 -11.44 9.88 84.03 0.83 -10.61 16 21 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 22 C -0.07 -3.61 5.47 84.86 0.46 -3.14 16 23 N -0.95 -56.42 10.47 21.65 0.23 -56.20 16 24 Si 0.96 45.08 29.55 68.60 2.03 47.10 16 25 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 26 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 27 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 28 C -0.10 -3.34 4.93 30.66 0.15 -3.19 16 29 C 0.12 3.57 6.43 86.35 0.55 4.12 16 30 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 0.92 7.96 -2.39 -0.02 0.90 16 32 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.18 3.55 8.06 -2.92 -0.02 3.52 16 34 H 0.23 3.04 8.06 -2.91 -0.02 3.01 16 35 H 0.17 0.50 7.92 -2.39 -0.02 0.49 16 36 H 0.15 0.78 7.58 -2.39 -0.02 0.76 16 37 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.13 0.33 5.93 -2.39 -0.01 0.32 16 39 H 0.08 1.16 7.03 -2.39 -0.02 1.14 16 40 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.05 1.61 8.07 -2.39 -0.02 1.59 16 42 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.07 1.93 5.49 -2.39 -0.01 1.91 16 44 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 46 H 0.03 1.72 6.73 -2.39 -0.02 1.70 16 47 H -0.01 -0.68 8.11 -2.39 -0.02 -0.70 16 48 H 0.24 14.27 8.31 -92.70 -0.77 13.50 16 49 H 0.05 1.79 6.19 -2.39 -0.01 1.77 16 50 H 0.04 1.88 7.49 -2.39 -0.02 1.86 16 51 H 0.06 2.10 7.01 -2.39 -0.02 2.09 16 52 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 Total: -1.00 -81.09 401.49 4.79 -76.30 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 0.90 Total: 13.72 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: 9.02 Total: 9.31 kcal Atomic # 7 Polarization: -119.81 SS G_CDS: -7.10 Total: -126.91 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.05 Total: -19.52 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -81.09 4.79 -76.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004485757.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.304 kcal (2) G-P(sol) polarization free energy of solvation -81.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds