Wall clock time and date at job start Wed Apr 1 2020 03:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30443 * 125.98847 * 2 1 4 4 N 1.39940 * 108.89737 * 180.02562 * 3 2 1 5 5 H 0.96994 * 125.75563 * 179.97438 * 4 3 2 6 6 C 1.34257 * 108.49011 * 359.97438 * 4 3 2 7 7 C 1.50705 * 126.29219 * 179.73730 * 6 4 3 8 8 C 1.38045 * 107.42110 * 0.02562 * 6 4 3 9 9 C 1.47426 * 126.41821 * 179.97438 * 8 6 4 10 10 O 1.21603 * 120.00076 * 89.99709 * 9 8 6 11 11 N 1.34777 * 119.99793 * 269.99619 * 9 8 6 12 12 C 1.46930 * 120.62948 * 359.72349 * 11 9 8 13 13 C 1.53629 * 108.54486 * 126.36802 * 12 11 9 14 14 C 1.53039 * 109.23968 * 54.85286 * 13 12 11 15 15 C 1.53001 * 109.44599 * 178.49861 * 14 13 12 16 16 H 1.08995 * 109.87641 * 181.02512 * 15 14 13 17 17 C 1.54332 * 109.88112 * 59.85024 * 15 14 13 18 18 C 1.55156 * 102.93950 * 218.38959 * 17 15 14 19 19 C 1.54907 * 101.58325 * 35.50401 * 18 17 15 20 20 N 1.47026 * 109.88359 * 302.04433 * 15 14 13 21 21 C 1.36927 * 125.64527 * 298.39290 * 20 15 14 22 22 H 1.07998 * 120.00606 * 345.69469 * 21 20 15 23 23 C 1.38816 * 120.00108 * 165.69347 * 21 20 15 24 24 N 1.31621 * 119.99392 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00360 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47178 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.46974 * 119.99768 * 25 23 21 28 28 H 1.48491 * 109.47289 * 239.99860 * 25 23 21 29 29 C 1.53042 * 109.53954 * 298.50972 * 14 13 12 30 30 C 1.46929 * 120.63206 * 179.97438 * 11 9 8 31 31 H 1.08995 * 109.47348 * 90.02700 * 1 2 3 32 32 H 1.09006 * 109.46815 * 210.02801 * 1 2 3 33 33 H 1.08996 * 109.46833 * 330.02376 * 1 2 3 34 34 H 1.09003 * 109.46924 * 90.01858 * 7 6 4 35 35 H 1.08995 * 109.47389 * 210.02383 * 7 6 4 36 36 H 1.08999 * 109.46725 * 330.02364 * 7 6 4 37 37 H 1.09000 * 109.58317 * 246.19800 * 12 11 9 38 38 H 1.08999 * 109.58479 * 6.62023 * 12 11 9 39 39 H 1.09003 * 109.62583 * 294.86331 * 13 12 11 40 40 H 1.09001 * 109.42895 * 174.72244 * 13 12 11 41 41 H 1.08999 * 109.46237 * 58.53472 * 14 13 12 42 42 H 1.08993 * 110.72024 * 336.75680 * 17 15 14 43 43 H 1.08997 * 110.71740 * 100.02740 * 17 15 14 44 44 H 1.09005 * 111.00485 * 277.42706 * 18 17 15 45 45 H 1.09000 * 111.00239 * 153.58108 * 18 17 15 46 46 H 1.09000 * 110.36499 * 204.14761 * 19 18 17 47 47 H 1.09002 * 110.46259 * 81.87537 * 19 18 17 48 48 H 0.97010 * 119.99417 * 180.02562 * 24 23 21 49 49 H 1.08996 * 109.49913 * 301.41701 * 29 14 13 50 50 H 1.09003 * 109.49617 * 181.31802 * 29 14 13 51 51 H 1.08994 * 109.58448 * 353.37550 * 30 11 9 52 52 H 1.09000 * 109.58584 * 113.65720 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6111 0.6442 -0.0006 5 1 4.3842 1.2300 -0.0011 6 6 3.6439 -0.6980 -0.0004 7 6 4.8800 -1.5601 -0.0064 8 6 2.3373 -1.1433 -0.0003 9 6 1.8915 -2.5486 -0.0006 10 8 1.7080 -3.1285 1.0524 11 7 1.6875 -3.1906 -1.1679 12 6 1.8993 -2.5014 -2.4482 13 6 2.8634 -3.3401 -3.3009 14 6 2.3114 -4.7610 -3.4361 15 6 3.2493 -5.5903 -4.3157 16 1 2.8531 -6.5991 -4.4316 17 6 4.6543 -5.6445 -3.6795 18 6 5.5962 -5.5498 -4.9088 19 6 4.8058 -4.5903 -5.8331 20 7 3.3912 -4.9543 -5.6337 21 6 2.3772 -4.7356 -6.5275 22 1 1.4279 -5.2346 -6.4001 23 6 2.5693 -3.8724 -7.5976 24 7 3.7261 -3.2639 -7.7526 25 14 1.1864 -3.5745 -8.8174 26 1 -0.0023 -4.3725 -8.4227 27 1 0.8346 -2.1318 -8.8243 28 1 1.6274 -3.9829 -10.1752 29 6 2.2096 -5.4045 -2.0513 30 6 1.2439 -4.5912 -1.1845 31 1 -0.3634 -0.0005 -1.0276 32 1 -0.3633 -0.8898 0.5143 33 1 -0.3633 0.8902 0.5135 34 1 5.1830 -1.7679 1.0198 35 1 4.6665 -2.4979 -0.5193 36 1 5.6846 -1.0379 -0.5241 37 1 0.9468 -2.3942 -2.9673 38 1 2.3314 -1.5174 -2.2663 39 1 3.8417 -3.3738 -2.8212 40 1 2.9577 -2.8907 -4.2895 41 1 1.3226 -4.7245 -3.8932 42 1 4.8074 -4.7981 -3.0101 43 1 4.8025 -6.5866 -3.1518 44 1 5.7261 -6.5253 -5.3776 45 1 6.5588 -5.1202 -4.6312 46 1 5.0938 -4.7427 -6.8732 47 1 4.9756 -3.5540 -5.5412 48 1 3.8602 -2.6603 -8.5002 49 1 3.1940 -5.4189 -1.5835 50 1 1.8385 -6.4246 -2.1505 51 1 1.2435 -4.9863 -0.1687 52 1 0.2380 -4.6509 -1.6001 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001004580559.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:05 Heat of formation + Delta-G solvation = 51.005545 kcal Electronic energy + Delta-G solvation = -32612.702348 eV Core-core repulsion = 28613.785996 eV Total energy + Delta-G solvation = -3998.916352 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.62402 -39.72563 -38.24643 -36.20730 -33.68844 -33.06730 -32.30628 -31.67812 -30.64346 -29.34964 -28.45480 -27.72156 -27.17677 -24.74996 -24.03027 -23.02802 -22.13208 -20.89683 -20.26690 -19.93439 -19.12265 -18.18867 -17.63209 -16.78116 -16.44030 -15.74445 -15.22698 -15.05495 -14.81776 -14.63354 -14.04953 -13.91009 -13.88329 -13.80576 -13.52704 -13.37021 -13.08015 -12.85430 -12.64388 -12.59704 -12.50973 -12.16690 -12.08754 -12.01412 -11.85598 -11.46307 -11.22979 -10.98519 -10.95729 -10.88803 -10.77825 -10.42528 -10.14651 -10.05287 -9.84114 -9.81081 -9.67013 -9.57672 -9.50527 -9.44741 -8.65165 -8.59033 -8.41029 -6.76556 -5.75488 -3.09723 1.57220 2.33122 2.55837 2.68110 3.29693 3.36731 3.43905 3.45257 4.32793 4.46803 4.47638 4.76940 4.92410 5.12028 5.12566 5.15678 5.23191 5.34919 5.43209 5.45192 5.48206 5.50576 5.56933 5.61267 5.63210 5.70204 5.71878 5.75142 5.81263 5.84511 5.90531 5.94140 6.05569 6.21316 6.23476 6.31537 6.34444 6.40125 6.49105 6.57779 6.59435 6.69536 6.77049 6.97545 7.00923 7.05711 7.16333 7.45289 7.54838 7.58538 7.62620 7.80443 8.28650 8.32307 9.20445 9.81991 10.51484 11.36556 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011314 B = 0.003621 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.264442 B = 7731.749953 C = 8298.931184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.116 3.884 3 N -0.296 5.296 4 N -0.463 5.463 5 H 0.441 0.559 6 C 0.132 3.868 7 C -0.100 4.100 8 C -0.276 4.276 9 C 0.598 3.402 10 O -0.548 6.548 11 N -0.596 5.596 12 C 0.110 3.890 13 C -0.115 4.115 14 C -0.092 4.092 15 C 0.166 3.834 16 H 0.031 0.969 17 C -0.127 4.127 18 C -0.151 4.151 19 C 0.175 3.825 20 N -0.593 5.593 21 C -0.221 4.221 22 H 0.073 0.927 23 C -0.004 4.004 24 N -0.918 5.918 25 Si 0.904 3.096 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.292 1.292 29 C -0.128 4.128 30 C 0.113 3.887 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.055 0.945 40 H 0.095 0.905 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.054 0.946 46 H 0.067 0.933 47 H 0.023 0.977 48 H 0.251 0.749 49 H 0.063 0.937 50 H 0.069 0.931 51 H 0.086 0.914 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.943 3.124 14.789 15.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.052 4.052 3 N -0.118 5.118 4 N -0.170 5.170 5 H 0.285 0.715 6 C 0.000 4.000 7 C -0.158 4.158 8 C -0.290 4.290 9 C 0.385 3.615 10 O -0.426 6.426 11 N -0.329 5.329 12 C -0.012 4.012 13 C -0.153 4.153 14 C -0.113 4.113 15 C 0.059 3.941 16 H 0.048 0.952 17 C -0.164 4.164 18 C -0.189 4.189 19 C 0.050 3.950 20 N -0.317 5.317 21 C -0.350 4.350 22 H 0.091 0.909 23 C -0.200 4.200 24 N -0.565 5.565 25 Si 0.735 3.265 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.219 1.219 29 C -0.166 4.166 30 C -0.010 4.010 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.074 0.926 40 H 0.114 0.886 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.086 0.914 47 H 0.041 0.959 48 H 0.061 0.939 49 H 0.082 0.918 50 H 0.088 0.912 51 H 0.105 0.895 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.812 4.193 15.114 15.706 hybrid contribution -0.248 -0.188 -0.853 0.908 sum 0.564 4.005 14.261 14.824 Atomic orbital electron populations 1.20264 0.86212 1.03688 1.03530 1.22296 0.96911 0.88865 0.97110 1.77069 0.86175 1.22156 1.26448 1.45942 1.07559 1.04720 1.58733 0.71459 1.21359 0.96170 0.84966 0.97502 1.20586 0.92252 0.98986 1.03975 1.19800 0.92140 0.94375 1.22719 1.17329 0.76485 0.84492 0.83208 1.90740 1.52621 1.67924 1.31287 1.48153 1.65975 1.12695 1.06044 1.21923 1.00282 0.95964 0.83077 1.21932 0.96916 0.95671 1.00756 1.21566 1.00865 0.95230 0.93597 1.20931 0.92561 0.94468 0.86153 0.95167 1.22645 0.96130 1.00250 0.97415 1.23015 0.97618 1.00804 0.97496 1.21384 0.82542 0.93546 0.97541 1.44492 1.04436 1.70058 1.12681 1.18976 0.92812 1.20029 1.03199 0.90906 1.24833 0.97119 0.98436 0.99660 1.69948 1.22226 1.32723 1.31585 0.86164 0.81525 0.77628 0.81196 1.20506 1.21811 1.21896 1.21984 0.99442 0.98809 0.96406 1.21619 0.97547 0.80366 1.01422 0.89882 0.90265 0.90390 0.89466 0.89133 0.90198 0.91491 0.90533 0.92599 0.88616 0.91321 0.91673 0.92805 0.92605 0.92759 0.91440 0.95881 0.93876 0.91817 0.91225 0.89533 0.91690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.28 36.01 0.37 -0.47 16 2 C 0.12 1.53 7.26 -82.02 -0.60 0.94 16 3 N -0.30 -3.89 12.63 33.90 0.43 -3.47 16 4 N -0.46 -4.95 7.29 33.86 0.25 -4.70 16 5 H 0.44 3.16 8.96 -182.72 -1.64 1.52 16 6 C 0.13 1.53 7.19 -81.60 -0.59 0.94 16 7 C -0.10 -0.89 10.25 36.01 0.37 -0.52 16 8 C -0.28 -3.79 3.86 -105.06 -0.41 -4.19 16 9 C 0.60 9.02 6.86 -12.52 -0.09 8.94 16 10 O -0.55 -9.80 16.52 5.27 0.09 -9.72 16 11 N -0.60 -8.36 2.97 -173.79 -0.52 -8.88 16 12 C 0.11 1.58 6.37 -3.48 -0.02 1.56 16 13 C -0.11 -1.87 4.95 -26.38 -0.13 -2.00 16 14 C -0.09 -1.50 1.91 -90.58 -0.17 -1.68 16 15 C 0.17 3.11 2.95 -66.95 -0.20 2.91 16 16 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 17 C -0.13 -2.05 5.22 -24.89 -0.13 -2.18 16 18 C -0.15 -2.70 7.08 -24.58 -0.17 -2.87 16 19 C 0.17 3.96 5.42 -2.53 -0.01 3.94 16 20 N -0.59 -13.70 2.28 -162.57 -0.37 -14.07 16 21 C -0.22 -5.71 9.85 -15.06 -0.15 -5.86 16 22 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 23 C 0.00 -0.10 5.47 -17.43 -0.10 -0.20 16 24 N -0.92 -25.55 10.56 55.49 0.59 -24.97 16 25 Si 0.90 21.28 29.55 -169.99 -5.02 16.26 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 C -0.13 -1.72 5.10 -26.63 -0.14 -1.86 16 30 C 0.11 1.50 6.43 -3.73 -0.02 1.48 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 0.86 8.01 -51.93 -0.42 0.44 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 0.92 7.96 -51.93 -0.41 0.51 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.08 1.09 6.25 -51.93 -0.32 0.77 16 39 H 0.06 0.88 6.13 -51.93 -0.32 0.56 16 40 H 0.10 1.96 7.53 -51.93 -0.39 1.57 16 41 H 0.07 1.25 8.04 -51.93 -0.42 0.83 16 42 H 0.06 1.01 5.49 -51.93 -0.29 0.73 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 46 H 0.07 1.75 6.91 -51.93 -0.36 1.39 16 47 H 0.02 0.56 8.06 -51.93 -0.42 0.14 16 48 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 49 H 0.06 0.86 7.11 -51.93 -0.37 0.49 16 50 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 51 H 0.09 1.18 7.00 -51.93 -0.36 0.82 16 52 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 402.69 15.07 6.07 6.07 Total: -1.00 -31.43 402.69 -10.58 -42.01 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -9.91 Total: 2.57 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -2.18 Total: -1.12 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: 0.38 Total: -56.08 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.43 -10.58 -42.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004580559.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.020 kcal (2) G-P(sol) polarization free energy of solvation -31.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds