Wall clock time and date at job start Wed Apr 1 2020 03:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30443 * 125.98847 * 2 1 4 4 N 1.39940 * 108.89737 * 180.02562 * 3 2 1 5 5 H 0.96994 * 125.75563 * 179.97438 * 4 3 2 6 6 C 1.34257 * 108.49011 * 359.97438 * 4 3 2 7 7 C 1.50705 * 126.29219 * 179.73730 * 6 4 3 8 8 C 1.38045 * 107.42110 * 0.02562 * 6 4 3 9 9 C 1.47426 * 126.41821 * 179.97438 * 8 6 4 10 10 O 1.21603 * 120.00076 * 89.99709 * 9 8 6 11 11 N 1.34777 * 119.99793 * 269.99619 * 9 8 6 12 12 C 1.46930 * 120.62948 * 359.72349 * 11 9 8 13 13 C 1.53629 * 108.54486 * 126.36802 * 12 11 9 14 14 C 1.53039 * 109.23968 * 54.85286 * 13 12 11 15 15 C 1.53001 * 109.44599 * 178.49861 * 14 13 12 16 16 H 1.08995 * 109.87641 * 181.02512 * 15 14 13 17 17 C 1.54332 * 109.88112 * 59.85024 * 15 14 13 18 18 C 1.55156 * 102.93950 * 218.38959 * 17 15 14 19 19 C 1.54907 * 101.58325 * 35.50401 * 18 17 15 20 20 N 1.47026 * 109.88359 * 302.04433 * 15 14 13 21 21 C 1.36927 * 125.64527 * 298.39290 * 20 15 14 22 22 H 1.07998 * 120.00606 * 345.69469 * 21 20 15 23 23 C 1.38816 * 120.00108 * 165.69347 * 21 20 15 24 24 N 1.31621 * 119.99392 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00360 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47178 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.46974 * 119.99768 * 25 23 21 28 28 H 1.48491 * 109.47289 * 239.99860 * 25 23 21 29 29 C 1.53042 * 109.53954 * 298.50972 * 14 13 12 30 30 C 1.46929 * 120.63206 * 179.97438 * 11 9 8 31 31 H 1.08995 * 109.47348 * 90.02700 * 1 2 3 32 32 H 1.09006 * 109.46815 * 210.02801 * 1 2 3 33 33 H 1.08996 * 109.46833 * 330.02376 * 1 2 3 34 34 H 1.09003 * 109.46924 * 90.01858 * 7 6 4 35 35 H 1.08995 * 109.47389 * 210.02383 * 7 6 4 36 36 H 1.08999 * 109.46725 * 330.02364 * 7 6 4 37 37 H 1.09000 * 109.58317 * 246.19800 * 12 11 9 38 38 H 1.08999 * 109.58479 * 6.62023 * 12 11 9 39 39 H 1.09003 * 109.62583 * 294.86331 * 13 12 11 40 40 H 1.09001 * 109.42895 * 174.72244 * 13 12 11 41 41 H 1.08999 * 109.46237 * 58.53472 * 14 13 12 42 42 H 1.08993 * 110.72024 * 336.75680 * 17 15 14 43 43 H 1.08997 * 110.71740 * 100.02740 * 17 15 14 44 44 H 1.09005 * 111.00485 * 277.42706 * 18 17 15 45 45 H 1.09000 * 111.00239 * 153.58108 * 18 17 15 46 46 H 1.09000 * 110.36499 * 204.14761 * 19 18 17 47 47 H 1.09002 * 110.46259 * 81.87537 * 19 18 17 48 48 H 0.97010 * 119.99417 * 180.02562 * 24 23 21 49 49 H 1.08996 * 109.49913 * 301.41701 * 29 14 13 50 50 H 1.09003 * 109.49617 * 181.31802 * 29 14 13 51 51 H 1.08994 * 109.58448 * 353.37550 * 30 11 9 52 52 H 1.09000 * 109.58584 * 113.65720 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6111 0.6442 -0.0006 5 1 4.3842 1.2300 -0.0011 6 6 3.6439 -0.6980 -0.0004 7 6 4.8800 -1.5601 -0.0064 8 6 2.3373 -1.1433 -0.0003 9 6 1.8915 -2.5486 -0.0006 10 8 1.7080 -3.1285 1.0524 11 7 1.6875 -3.1906 -1.1679 12 6 1.8993 -2.5014 -2.4482 13 6 2.8634 -3.3401 -3.3009 14 6 2.3114 -4.7610 -3.4361 15 6 3.2493 -5.5903 -4.3157 16 1 2.8531 -6.5991 -4.4316 17 6 4.6543 -5.6445 -3.6795 18 6 5.5962 -5.5498 -4.9088 19 6 4.8058 -4.5903 -5.8331 20 7 3.3912 -4.9543 -5.6337 21 6 2.3772 -4.7356 -6.5275 22 1 1.4279 -5.2346 -6.4001 23 6 2.5693 -3.8724 -7.5976 24 7 3.7261 -3.2639 -7.7526 25 14 1.1864 -3.5745 -8.8174 26 1 -0.0023 -4.3725 -8.4227 27 1 0.8346 -2.1318 -8.8243 28 1 1.6274 -3.9829 -10.1752 29 6 2.2096 -5.4045 -2.0513 30 6 1.2439 -4.5912 -1.1845 31 1 -0.3634 -0.0005 -1.0276 32 1 -0.3633 -0.8898 0.5143 33 1 -0.3633 0.8902 0.5135 34 1 5.1830 -1.7679 1.0198 35 1 4.6665 -2.4979 -0.5193 36 1 5.6846 -1.0379 -0.5241 37 1 0.9468 -2.3942 -2.9673 38 1 2.3314 -1.5174 -2.2663 39 1 3.8417 -3.3738 -2.8212 40 1 2.9577 -2.8907 -4.2895 41 1 1.3226 -4.7245 -3.8932 42 1 4.8074 -4.7981 -3.0101 43 1 4.8025 -6.5866 -3.1518 44 1 5.7261 -6.5253 -5.3776 45 1 6.5588 -5.1202 -4.6312 46 1 5.0938 -4.7427 -6.8732 47 1 4.9756 -3.5540 -5.5412 48 1 3.8602 -2.6603 -8.5002 49 1 3.1940 -5.4189 -1.5835 50 1 1.8385 -6.4246 -2.1505 51 1 1.2435 -4.9863 -0.1687 52 1 0.2380 -4.6509 -1.6001 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004580559.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:04 Heat of formation + Delta-G solvation = 33.223169 kcal Electronic energy + Delta-G solvation = -32613.473450 eV Core-core repulsion = 28613.785996 eV Total energy + Delta-G solvation = -3999.687453 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.57441 -40.94967 -39.66212 -37.58793 -34.71434 -34.54645 -33.78520 -32.73158 -31.79381 -31.13233 -29.49194 -28.88561 -28.17487 -26.51024 -25.42644 -24.24057 -23.34224 -22.18258 -21.60110 -21.14933 -20.37350 -19.42233 -18.75972 -18.40881 -17.68800 -16.97677 -16.67086 -16.31612 -16.12416 -15.89179 -15.68516 -15.25416 -15.04978 -14.92084 -14.44539 -14.33959 -14.24646 -14.07252 -13.85929 -13.72929 -13.49868 -13.40698 -13.35166 -13.27972 -13.02088 -12.95046 -12.78027 -12.76289 -12.57006 -12.15237 -11.95596 -11.87842 -11.77716 -11.74012 -11.45358 -11.19657 -11.11546 -10.98071 -10.84133 -10.58637 -10.40447 -9.63532 -9.60413 -8.67455 -7.78526 -5.11893 0.67066 1.34789 1.46525 1.48841 1.52978 1.56883 1.73737 2.18421 2.54182 3.40791 3.44768 3.56071 3.71678 3.87367 3.88666 4.00259 4.04630 4.23853 4.27407 4.27998 4.30675 4.32517 4.39041 4.44817 4.58982 4.60567 4.66986 4.68669 4.71100 4.83775 4.85632 4.87961 4.94379 4.95740 4.99208 5.03302 5.12967 5.14392 5.15690 5.25929 5.31580 5.39493 5.45320 5.58612 5.61533 5.70088 5.75103 5.78489 5.88057 6.24732 6.34039 6.41484 6.54634 7.16688 7.20732 7.90352 8.57734 9.32719 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011314 B = 0.003621 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.264442 B = 7731.749953 C = 8298.931184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.105 3.895 3 N -0.317 5.317 4 N -0.452 5.452 5 H 0.456 0.544 6 C 0.142 3.858 7 C -0.099 4.099 8 C -0.309 4.309 9 C 0.606 3.394 10 O -0.578 6.578 11 N -0.591 5.591 12 C 0.123 3.877 13 C -0.101 4.101 14 C -0.083 4.083 15 C 0.158 3.842 16 H 0.028 0.972 17 C -0.114 4.114 18 C -0.139 4.139 19 C 0.181 3.819 20 N -0.608 5.608 21 C -0.219 4.219 22 H 0.073 0.927 23 C -0.057 4.057 24 N -0.946 5.946 25 Si 0.959 3.041 26 H -0.268 1.268 27 H -0.296 1.296 28 H -0.298 1.298 29 C -0.115 4.115 30 C 0.112 3.888 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.080 0.920 36 H 0.105 0.895 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.050 0.950 41 H 0.047 0.953 42 H 0.076 0.924 43 H 0.085 0.915 44 H 0.058 0.942 45 H 0.078 0.922 46 H 0.026 0.974 47 H -0.002 1.002 48 H 0.243 0.757 49 H 0.072 0.928 50 H 0.086 0.914 51 H 0.089 0.911 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.332 2.434 16.649 16.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.062 4.062 3 N -0.140 5.140 4 N -0.160 5.160 5 H 0.303 0.697 6 C 0.008 3.992 7 C -0.157 4.157 8 C -0.324 4.324 9 C 0.393 3.607 10 O -0.458 6.458 11 N -0.323 5.323 12 C 0.001 3.999 13 C -0.139 4.139 14 C -0.104 4.104 15 C 0.052 3.948 16 H 0.046 0.954 17 C -0.151 4.151 18 C -0.177 4.177 19 C 0.056 3.944 20 N -0.332 5.332 21 C -0.348 4.348 22 H 0.090 0.910 23 C -0.251 4.251 24 N -0.595 5.595 25 Si 0.789 3.211 26 H -0.193 1.193 27 H -0.223 1.223 28 H -0.226 1.226 29 C -0.153 4.153 30 C -0.010 4.010 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.120 0.880 35 H 0.099 0.901 36 H 0.123 0.877 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.094 0.906 43 H 0.103 0.897 44 H 0.076 0.924 45 H 0.097 0.903 46 H 0.044 0.956 47 H 0.016 0.984 48 H 0.052 0.948 49 H 0.090 0.910 50 H 0.104 0.896 51 H 0.107 0.893 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.195 3.495 16.994 17.391 hybrid contribution -0.341 0.004 -1.422 1.462 sum 0.854 3.499 15.572 15.983 Atomic orbital electron populations 1.20320 0.85087 1.04092 1.04105 1.22644 0.97925 0.88743 0.96851 1.77017 0.87178 1.22528 1.27321 1.45969 1.07481 1.04825 1.57701 0.69662 1.21743 0.96446 0.85381 0.95598 1.20706 0.91701 0.98217 1.05105 1.19868 0.93364 0.93826 1.25304 1.17440 0.75666 0.84831 0.82723 1.90719 1.54070 1.68796 1.32220 1.48128 1.65554 1.12991 1.05588 1.21706 0.99591 0.95735 0.82893 1.21714 0.97931 0.95634 0.98654 1.21402 0.98961 0.95085 0.94924 1.21164 0.94930 0.94001 0.84733 0.95445 1.22616 0.93417 1.02379 0.96710 1.22890 0.98355 0.99522 0.96962 1.21144 0.83371 0.93606 0.96315 1.44692 1.04189 1.69932 1.14401 1.19221 0.93299 1.18951 1.03359 0.90959 1.25460 0.98903 0.99129 1.01578 1.70137 1.23761 1.33673 1.31948 0.85282 0.79724 0.77086 0.78959 1.19265 1.22334 1.22563 1.21873 1.00108 0.99302 0.94027 1.21685 0.97917 0.79836 1.01520 0.89161 0.90678 0.89137 0.88037 0.90143 0.87684 0.91817 0.90262 0.91717 0.93110 0.93465 0.90567 0.89691 0.92361 0.90333 0.95601 0.98412 0.94762 0.90962 0.89558 0.89298 0.90947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.60 10.28 71.24 0.73 -0.87 16 2 C 0.11 2.71 7.26 43.52 0.32 3.02 16 3 N -0.32 -8.01 12.63 -46.67 -0.59 -8.60 16 4 N -0.45 -8.88 7.29 -46.79 -0.34 -9.22 16 5 H 0.46 5.59 8.96 -213.43 -1.91 3.68 16 6 C 0.14 3.02 7.19 42.14 0.30 3.32 16 7 C -0.10 -1.50 10.25 71.24 0.73 -0.76 16 8 C -0.31 -8.13 3.86 -20.15 -0.08 -8.21 16 9 C 0.61 17.50 6.86 86.66 0.59 18.09 16 10 O -0.58 -20.01 16.52 -4.04 -0.07 -20.08 16 11 N -0.59 -15.73 2.97 -822.00 -2.44 -18.17 16 12 C 0.12 3.46 6.37 86.51 0.55 4.01 16 13 C -0.10 -3.24 4.95 30.82 0.15 -3.09 16 14 C -0.08 -2.62 1.91 -10.77 -0.02 -2.64 16 15 C 0.16 5.68 2.95 45.34 0.13 5.81 16 16 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 17 C -0.11 -3.34 5.22 31.79 0.17 -3.18 16 18 C -0.14 -4.71 7.08 31.98 0.23 -4.49 16 19 C 0.18 8.34 5.42 86.85 0.47 8.81 16 20 N -0.61 -28.40 2.28 -668.26 -1.52 -29.92 16 21 C -0.22 -11.47 9.85 84.04 0.83 -10.64 16 22 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 23 C -0.06 -3.13 5.47 84.86 0.46 -2.66 16 24 N -0.95 -54.76 10.56 21.65 0.23 -54.53 16 25 Si 0.96 44.71 29.55 68.60 2.03 46.74 16 26 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 27 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 28 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 29 C -0.11 -2.77 5.10 30.66 0.16 -2.61 16 30 C 0.11 2.75 6.43 86.35 0.55 3.31 16 31 H 0.09 1.69 8.14 -2.39 -0.02 1.68 16 32 H 0.07 1.59 8.01 -2.38 -0.02 1.57 16 33 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.08 1.42 7.96 -2.39 -0.02 1.41 16 36 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.08 2.21 6.25 -2.39 -0.01 2.20 16 39 H 0.06 1.94 6.13 -2.39 -0.01 1.93 16 40 H 0.05 2.13 7.53 -2.39 -0.02 2.11 16 41 H 0.05 1.69 8.04 -2.39 -0.02 1.68 16 42 H 0.08 2.10 5.49 -2.39 -0.01 2.08 16 43 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 45 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 46 H 0.03 1.39 6.91 -2.39 -0.02 1.37 16 47 H 0.00 -0.11 8.06 -2.39 -0.02 -0.13 16 48 H 0.24 13.86 8.31 -92.70 -0.77 13.09 16 49 H 0.07 1.67 7.11 -2.39 -0.02 1.66 16 50 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 51 H 0.09 2.22 7.00 -2.39 -0.02 2.21 16 52 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -70.17 402.69 2.59 -67.58 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -0.99 Total: 18.96 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: 6.28 Total: 7.23 kcal Atomic # 7 Polarization: -115.76 SS G_CDS: -4.66 Total: -120.43 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.07 Total: -20.08 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -70.17 2.59 -67.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004580559.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.799 kcal (2) G-P(sol) polarization free energy of solvation -70.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds