Wall clock time and date at job start Wed Apr 1 2020 04:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34669 * 125.99175 * 2 1 4 4 N 1.36885 * 106.81453 * 180.02562 * 3 2 1 5 5 C 1.46501 * 126.39209 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47470 * 356.95372 * 5 4 3 7 7 C 1.53001 * 109.47118 * 236.95692 * 5 4 3 8 8 C 1.50700 * 109.47133 * 116.95563 * 5 4 3 9 9 O 1.21284 * 120.00045 * 354.81482 * 8 5 4 10 10 N 1.34780 * 120.00143 * 175.08826 * 8 5 4 11 11 C 1.46494 * 120.00058 * 179.72480 * 10 8 5 12 12 H 1.09002 * 115.55681 * 9.31816 * 11 10 8 13 13 C 1.53025 * 117.50153 * 223.58492 * 11 10 8 14 14 C 1.52819 * 117.50104 * 155.00004 * 11 10 8 15 15 C 1.53190 * 117.71213 * 359.86275 * 14 11 10 16 16 C 1.53354 * 108.76651 * 158.88708 * 15 14 11 17 17 N 1.46845 * 108.81610 * 51.30626 * 16 15 14 18 18 C 1.36942 * 120.38071 * 123.07639 * 17 16 15 19 19 H 1.07994 * 119.99592 * 214.13929 * 18 17 16 20 20 C 1.38807 * 119.99902 * 34.13802 * 18 17 16 21 21 N 1.31619 * 120.00551 * 17.51005 * 20 18 17 22 22 Si 1.86797 * 119.99840 * 197.50469 * 20 18 17 23 23 H 1.48502 * 109.47058 * 90.00496 * 22 20 18 24 24 H 1.48504 * 109.47482 * 210.00380 * 22 20 18 25 25 H 1.48505 * 109.47388 * 330.00598 * 22 20 18 26 26 C 1.46848 * 119.23484 * 303.09759 * 17 16 15 27 27 C 1.53179 * 117.71575 * 215.10257 * 14 11 10 28 28 C 1.35042 * 107.21029 * 0.26322 * 4 3 2 29 29 N 1.30506 * 108.69405 * 359.56612 * 28 4 3 30 30 H 1.09001 * 109.47326 * 89.99761 * 1 2 3 31 31 H 1.09007 * 109.47372 * 209.99962 * 1 2 3 32 32 H 1.09007 * 109.47265 * 329.99765 * 1 2 3 33 33 H 1.07995 * 126.58920 * 359.96664 * 3 2 1 34 34 H 1.08999 * 109.47521 * 179.97438 * 6 5 4 35 35 H 1.09000 * 109.46970 * 300.00444 * 6 5 4 36 36 H 1.09002 * 109.46785 * 59.99947 * 6 5 4 37 37 H 1.09002 * 109.46882 * 300.00246 * 7 5 4 38 38 H 1.09000 * 109.47099 * 59.99692 * 7 5 4 39 39 H 1.08997 * 109.47561 * 180.02562 * 7 5 4 40 40 H 0.97001 * 119.99753 * 359.72678 * 10 8 5 41 41 H 1.09003 * 117.50916 * 359.97438 * 13 11 10 42 42 H 1.09004 * 117.50733 * 145.04898 * 13 11 10 43 43 H 1.08995 * 109.58462 * 278.66827 * 15 14 11 44 44 H 1.08995 * 109.58841 * 39.10298 * 15 14 11 45 45 H 1.08997 * 109.57871 * 291.50288 * 16 15 14 46 46 H 1.09001 * 109.57485 * 171.10615 * 16 15 14 47 47 H 0.96999 * 120.00366 * 179.97438 * 21 20 18 48 48 H 1.08999 * 109.57540 * 297.11260 * 26 17 16 49 49 H 1.08995 * 109.58112 * 176.70445 * 26 17 16 50 50 H 1.09008 * 109.58684 * 320.90351 * 27 14 11 51 51 H 1.08994 * 109.58942 * 81.18730 * 27 14 11 52 52 H 1.08000 * 125.65180 * 179.71367 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2983 1.0896 0.0000 4 7 3.5912 0.6400 -0.0006 5 6 4.7996 1.4683 -0.0003 6 6 4.4059 2.9448 -0.0758 7 6 5.6647 1.1087 -1.2099 8 6 5.5783 1.2202 1.2658 9 8 5.1199 0.5019 2.1289 10 7 6.7819 1.8009 1.4415 11 6 7.5362 1.5646 2.6749 12 1 7.1368 0.7897 3.3292 13 6 8.2068 2.7712 3.3352 14 6 9.0549 1.7235 2.6147 15 6 9.6775 2.1145 1.2707 16 6 11.0615 2.7235 1.5267 17 7 11.8303 1.8097 2.3812 18 6 13.0430 1.3281 1.9653 19 1 13.3495 0.3292 2.2381 20 6 13.8779 2.1240 1.1932 21 7 13.6864 3.4252 1.1439 22 14 15.2737 1.3482 0.2240 23 1 14.7892 0.9753 -1.1293 24 1 16.3900 2.3196 0.0998 25 1 15.7516 0.1327 0.9309 26 6 11.2837 1.4179 3.6866 27 6 9.9043 0.7823 3.4744 28 6 3.5449 -0.7097 -0.0068 29 7 2.2951 -1.0853 -0.0007 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5139 33 1 1.9750 2.1200 -0.0005 34 1 5.3049 3.5611 -0.0752 35 1 3.8426 3.1242 -0.9916 36 1 3.7895 3.2010 0.7859 37 1 5.9452 0.0568 -1.1561 38 1 5.1014 1.2881 -2.1257 39 1 6.5640 1.7246 -1.2095 40 1 7.1485 2.3754 0.7512 41 1 8.0872 3.7408 2.8518 42 1 8.2487 2.7904 4.4243 43 1 9.7784 1.2289 0.6434 44 1 9.0423 2.8471 0.7730 45 1 10.9504 3.6853 2.0274 46 1 11.5810 2.8610 0.5784 47 1 14.2701 3.9813 0.6046 48 1 11.1862 2.2989 4.3210 49 1 11.9495 0.6963 4.1598 50 1 9.4194 0.6309 4.4388 51 1 10.0153 -0.1759 2.9669 52 1 4.4003 -1.3689 -0.0133 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016682371.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:47 Heat of formation + Delta-G solvation = 70.898913 kcal Electronic energy + Delta-G solvation = -31142.772163 eV Core-core repulsion = 27144.718453 eV Total energy + Delta-G solvation = -3998.053710 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.46892 -40.28643 -38.69081 -36.16719 -35.58922 -33.42379 -32.00334 -31.46653 -30.65243 -30.24092 -28.40661 -28.30946 -26.62392 -24.49486 -24.36206 -22.65307 -22.56116 -21.47865 -20.72809 -20.20765 -19.92928 -18.41825 -17.94366 -17.03740 -16.58163 -15.94947 -15.45577 -15.14647 -14.87547 -14.58598 -14.50071 -14.23750 -14.05270 -13.71099 -13.52591 -13.44804 -13.38599 -13.10409 -12.97991 -12.84223 -12.79444 -12.72452 -12.54283 -12.38704 -12.20126 -11.92180 -11.80201 -11.61373 -11.47247 -11.07401 -10.81628 -10.58694 -10.38089 -10.33058 -10.08243 -10.02323 -9.81243 -9.68509 -9.61850 -9.43671 -8.64480 -8.52880 -8.42070 -6.64983 -5.87040 -3.34707 1.83713 2.17590 2.37180 2.88643 3.06363 3.31773 3.39632 3.40782 3.94683 4.03588 4.12018 4.19106 4.43252 4.48319 4.59171 4.84000 4.88697 4.99042 5.00033 5.00893 5.03390 5.11616 5.15276 5.17974 5.31236 5.39484 5.40889 5.51356 5.54442 5.54577 5.71210 5.72002 5.84180 5.93525 5.95980 6.00984 6.14606 6.18515 6.31670 6.38680 6.46776 6.52588 6.59472 6.65153 6.76512 6.93187 6.99806 7.18676 7.24228 7.47797 7.75600 7.87934 8.00686 8.42304 9.14978 9.76812 10.36924 11.20626 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020468 B = 0.002238 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.673610 B =12506.364295 C =12891.981551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.004 4.004 3 C -0.056 4.056 4 N -0.437 5.437 5 C 0.144 3.856 6 C -0.155 4.155 7 C -0.159 4.159 8 C 0.510 3.490 9 O -0.521 6.521 10 N -0.685 5.685 11 C 0.066 3.934 12 H 0.132 0.868 13 C -0.180 4.180 14 C -0.093 4.093 15 C -0.105 4.105 16 C 0.178 3.822 17 N -0.587 5.587 18 C -0.259 4.259 19 H 0.062 0.938 20 C 0.009 3.991 21 N -0.898 5.898 22 Si 0.900 3.100 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.278 1.278 26 C 0.149 3.851 27 C -0.099 4.099 28 C 0.211 3.789 29 N -0.494 5.494 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.170 0.830 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.402 0.598 41 H 0.093 0.907 42 H 0.098 0.902 43 H 0.062 0.938 44 H 0.042 0.958 45 H 0.020 0.980 46 H 0.079 0.921 47 H 0.254 0.746 48 H 0.020 0.980 49 H 0.056 0.944 50 H 0.053 0.947 51 H 0.063 0.937 52 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.588 0.776 -4.106 21.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.132 4.132 3 C -0.188 4.188 4 N -0.120 5.120 5 C 0.055 3.945 6 C -0.212 4.212 7 C -0.217 4.217 8 C 0.293 3.707 9 O -0.396 6.396 10 N -0.335 5.335 11 C -0.039 4.039 12 H 0.150 0.850 13 C -0.219 4.219 14 C -0.095 4.095 15 C -0.144 4.144 16 C 0.052 3.948 17 N -0.310 5.310 18 C -0.389 4.389 19 H 0.080 0.920 20 C -0.191 4.191 21 N -0.541 5.541 22 Si 0.730 3.270 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.203 1.203 26 C 0.023 3.977 27 C -0.138 4.138 28 C -0.072 4.072 29 N -0.213 5.213 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.188 0.812 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.238 0.762 41 H 0.112 0.888 42 H 0.117 0.883 43 H 0.081 0.919 44 H 0.061 0.939 45 H 0.038 0.962 46 H 0.097 0.903 47 H 0.064 0.936 48 H 0.038 0.962 49 H 0.074 0.926 50 H 0.072 0.928 51 H 0.082 0.918 52 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -20.968 -0.337 -3.551 21.269 hybrid contribution 1.360 0.929 -0.767 1.817 sum -19.608 0.593 -4.318 20.087 Atomic orbital electron populations 1.19989 0.87865 1.02482 1.01896 1.20679 0.96391 0.88632 1.07516 1.22288 0.82716 1.00354 1.13443 1.45171 1.05229 1.07263 1.54332 1.20773 0.85106 0.93272 0.95365 1.22136 1.03977 0.90817 1.04315 1.22247 0.99686 1.03924 0.95795 1.20344 0.81705 0.80605 0.88002 1.90779 1.68371 1.37027 1.43431 1.45326 1.18232 1.49654 1.20309 1.21937 0.92254 1.01331 0.88364 0.85039 1.23540 1.03834 0.94293 1.00220 1.21958 0.89261 0.99547 0.98691 1.21822 0.99608 0.99976 0.93008 1.20638 0.87017 0.90749 0.96438 1.43899 1.18840 1.54661 1.13567 1.19135 0.93459 0.96033 1.30246 0.91991 1.25177 0.97340 0.94787 1.01790 1.70043 1.39939 1.02803 1.41320 0.86338 0.81731 0.78561 0.80405 1.21369 1.21737 1.20302 1.20871 0.91513 0.96605 0.88730 1.21705 0.97406 0.97718 0.96974 1.24740 0.96874 0.81787 1.03764 1.70209 1.00299 1.30308 1.20507 0.91648 0.91311 0.91592 0.81232 0.89518 0.89914 0.90709 0.90700 0.90144 0.89546 0.76152 0.88843 0.88315 0.91933 0.93923 0.96196 0.90255 0.93607 0.96237 0.92557 0.92845 0.91788 0.78584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.56 10.42 36.00 0.38 -0.19 16 2 C 0.00 -0.04 7.09 -82.86 -0.59 -0.63 16 3 C -0.06 -0.59 10.37 -16.56 -0.17 -0.76 16 4 N -0.44 -4.77 2.33 -105.82 -0.25 -5.02 16 5 C 0.14 1.27 1.07 -132.97 -0.14 1.13 16 6 C -0.15 -0.96 7.34 37.16 0.27 -0.69 16 7 C -0.16 -1.10 8.33 37.16 0.31 -0.79 16 8 C 0.51 6.06 6.43 -10.98 -0.07 5.99 16 9 O -0.52 -8.41 15.32 5.55 0.09 -8.33 16 10 N -0.68 -7.52 5.17 -53.89 -0.28 -7.80 16 11 C 0.07 0.87 6.14 -68.01 -0.42 0.46 16 12 H 0.13 1.91 7.40 -51.93 -0.38 1.52 16 13 C -0.18 -2.37 9.86 -26.80 -0.26 -2.63 16 14 C -0.09 -1.40 1.94 -154.49 -0.30 -1.70 16 15 C -0.10 -1.72 5.37 -26.45 -0.14 -1.86 16 16 C 0.18 3.87 5.37 -3.67 -0.02 3.85 16 17 N -0.59 -13.90 2.90 -172.25 -0.50 -14.40 16 18 C -0.26 -6.83 9.48 -15.06 -0.14 -6.97 16 19 H 0.06 1.63 7.89 -52.49 -0.41 1.22 16 20 C 0.01 0.23 4.85 -17.43 -0.08 0.15 16 21 N -0.90 -25.10 11.62 55.49 0.64 -24.45 16 22 Si 0.90 20.96 29.59 -169.99 -5.03 15.93 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 C 0.15 2.98 6.52 -3.67 -0.02 2.96 16 27 C -0.10 -1.61 5.83 -26.46 -0.15 -1.77 16 28 C 0.21 2.69 10.96 -90.37 -0.99 1.70 16 29 N -0.49 -7.05 11.25 -10.87 -0.12 -7.17 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 32 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 33 H 0.17 1.26 7.29 -52.49 -0.38 0.88 16 34 H 0.09 0.42 7.93 -51.93 -0.41 0.01 16 35 H 0.08 0.40 8.00 -51.93 -0.42 -0.02 16 36 H 0.07 0.52 7.79 -51.93 -0.40 0.11 16 37 H 0.07 0.57 7.87 -51.93 -0.41 0.16 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.49 7.30 -51.93 -0.38 0.11 16 40 H 0.40 3.63 6.02 -40.82 -0.25 3.38 16 41 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.04 0.57 6.75 -51.93 -0.35 0.22 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.08 1.95 6.35 -51.93 -0.33 1.62 16 47 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 49 H 0.06 1.12 7.92 -51.93 -0.41 0.71 16 50 H 0.05 0.76 8.10 -51.92 -0.42 0.34 16 51 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 52 H 0.20 2.17 8.04 -52.49 -0.42 1.75 16 LS Contribution 411.24 15.07 6.20 6.20 Total: -1.00 -33.13 411.24 -10.55 -43.68 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -8.74 Total: 3.13 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -2.55 Total: -1.77 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: -0.50 Total: -58.84 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: 0.09 Total: -8.33 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.13 -10.55 -43.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016682371.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.579 kcal (2) G-P(sol) polarization free energy of solvation -33.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds