Wall clock time and date at job start Wed Apr 1 2020 03:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30835 * 125.89266 * 2 1 4 4 N 1.40091 * 108.20438 * 180.02562 * 3 2 1 5 5 H 0.96998 * 126.03935 * 179.97438 * 4 3 2 6 6 C 1.34946 * 107.92110 * 0.02562 * 4 3 2 7 7 C 1.50699 * 126.12207 * 180.02562 * 6 4 3 8 8 C 1.35307 * 107.74977 * 359.97438 * 6 4 3 9 9 C 1.50705 * 126.04206 * 180.26642 * 8 6 4 10 10 H 1.08997 * 109.46689 * 359.71242 * 9 8 6 11 11 C 1.52996 * 109.47053 * 119.71724 * 9 8 6 12 12 C 1.50703 * 109.47188 * 239.71980 * 9 8 6 13 13 O 1.21285 * 119.99962 * 359.97438 * 12 9 8 14 14 N 1.34773 * 120.00053 * 180.02562 * 12 9 8 15 15 C 1.46497 * 120.00007 * 179.97438 * 14 12 9 16 16 H 1.08998 * 115.55603 * 9.31250 * 15 14 12 17 17 C 1.53029 * 117.50311 * 223.58219 * 15 14 12 18 18 C 1.52818 * 117.50340 * 154.99655 * 15 14 12 19 19 C 1.53188 * 117.71279 * 359.86180 * 18 15 14 20 20 C 1.53349 * 108.76967 * 158.88847 * 19 18 15 21 21 N 1.46841 * 108.81655 * 51.30459 * 20 19 18 22 22 C 1.36933 * 120.38147 * 123.12056 * 21 20 19 23 23 H 1.08001 * 120.00124 * 208.88601 * 22 21 20 24 24 C 1.38817 * 120.00022 * 28.88916 * 22 21 20 25 25 N 1.31619 * 120.00005 * 17.84606 * 24 22 21 26 26 Si 1.86804 * 119.99826 * 197.85103 * 24 22 21 27 27 H 1.48489 * 109.47223 * 59.99954 * 26 24 22 28 28 H 1.48508 * 109.46756 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.46880 * 299.99467 * 26 24 22 30 30 C 1.46844 * 119.23286 * 303.10008 * 21 20 19 31 31 C 1.53182 * 117.71825 * 215.09915 * 18 15 14 32 32 H 1.09003 * 109.47247 * 269.96986 * 1 2 3 33 33 H 1.08997 * 109.47856 * 29.97584 * 1 2 3 34 34 H 1.09005 * 109.46724 * 149.97910 * 1 2 3 35 35 H 1.08999 * 109.47332 * 269.97272 * 7 6 4 36 36 H 1.08997 * 109.47507 * 29.97315 * 7 6 4 37 37 H 1.09005 * 109.46953 * 149.96882 * 7 6 4 38 38 H 1.08995 * 109.47274 * 60.00353 * 11 9 8 39 39 H 1.09006 * 109.46922 * 180.02562 * 11 9 8 40 40 H 1.09000 * 109.47300 * 299.99631 * 11 9 8 41 41 H 0.97001 * 119.99786 * 359.97438 * 14 12 9 42 42 H 1.09006 * 117.50358 * 359.97438 * 17 15 14 43 43 H 1.09002 * 117.50678 * 145.04463 * 17 15 14 44 44 H 1.09003 * 109.58403 * 278.67039 * 19 18 15 45 45 H 1.09001 * 109.58979 * 39.09768 * 19 18 15 46 46 H 1.08998 * 109.57635 * 291.50150 * 20 19 18 47 47 H 1.09000 * 109.57636 * 171.10534 * 20 19 18 48 48 H 0.96994 * 119.99848 * 179.97438 * 25 24 22 49 49 H 1.09002 * 109.58068 * 297.10392 * 30 21 20 50 50 H 1.09000 * 109.57628 * 176.70560 * 30 21 20 51 51 H 1.09005 * 109.58593 * 320.90333 * 31 18 15 52 52 H 1.08999 * 109.58804 * 81.32694 * 31 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2740 1.0599 0.0000 4 7 3.6087 0.6343 -0.0006 5 1 4.3907 1.2081 -0.0011 6 6 3.6142 -0.7152 -0.0015 7 6 4.8351 -1.5986 -0.0019 8 6 2.3272 -1.1329 -0.0009 9 6 1.8600 -2.5657 0.0041 10 1 2.7245 -3.2297 0.0020 11 6 1.0212 -2.8242 1.2571 12 6 1.0241 -2.8258 -1.2226 13 8 0.8267 -1.9353 -2.0220 14 7 0.4950 -4.0477 -1.4309 15 6 -0.3180 -4.3004 -2.6230 16 1 -0.3194 -3.5052 -3.3684 17 6 -1.6093 -5.1012 -2.4410 18 6 -0.4025 -5.7405 -3.1274 19 6 0.3703 -6.8129 -2.3533 20 6 -0.2421 -8.1839 -2.6648 21 7 -0.3315 -8.3426 -4.1219 22 6 0.2716 -9.4045 -4.7412 23 1 0.6176 -9.3103 -5.7599 24 6 0.4383 -10.6023 -4.0596 25 7 -0.2702 -10.8482 -2.9780 26 14 1.6685 -11.8651 -4.6774 27 1 3.0276 -11.2672 -4.6899 28 1 1.6567 -13.0480 -3.7796 29 1 1.2992 -12.2838 -6.0534 30 6 -1.0757 -7.3496 -4.9070 31 6 -0.4801 -5.9618 -4.6412 32 1 -0.3634 -0.0005 1.0277 33 1 -0.3635 0.8901 -0.5134 34 1 -0.3633 -0.8899 -0.5142 35 1 5.1294 -1.8113 -1.0296 36 1 5.6512 -1.0908 0.5121 37 1 4.6077 -2.5328 0.5118 38 1 0.1568 -2.1603 1.2591 39 1 0.6836 -3.8607 1.2610 40 1 1.6258 -2.6362 2.1444 41 1 0.6526 -4.7599 -0.7914 42 1 -1.8536 -5.4404 -1.4343 43 1 -2.4606 -4.8328 -3.0667 44 1 1.4164 -6.8019 -2.6594 45 1 0.2982 -6.6149 -1.2838 46 1 -1.2390 -8.2462 -2.2286 47 1 0.3900 -8.9690 -2.2499 48 1 -0.1540 -11.6853 -2.5020 49 1 -2.1243 -7.3602 -4.6098 50 1 -0.9923 -7.5858 -5.9679 51 1 -1.1165 -5.1990 -5.0898 52 1 0.5201 -5.9050 -5.0705 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016879531.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:11 Heat of formation + Delta-G solvation = 70.492336 kcal Electronic energy + Delta-G solvation = -31131.973078 eV Core-core repulsion = 27133.901737 eV Total energy + Delta-G solvation = -3998.071341 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.67527 -39.87531 -38.39139 -35.47372 -34.47837 -33.55935 -32.96501 -31.47745 -30.34907 -30.10190 -28.22355 -28.14483 -26.98342 -24.69139 -24.32087 -22.46035 -22.14265 -21.00812 -20.33987 -20.27216 -19.26090 -18.21267 -17.69627 -16.69320 -16.56620 -15.85270 -15.36257 -15.20511 -14.79744 -14.43390 -14.09925 -14.02522 -13.80499 -13.57378 -13.49941 -13.37174 -13.11765 -13.00682 -12.71843 -12.63253 -12.59300 -12.48619 -12.28045 -12.23629 -11.82265 -11.70035 -11.58195 -11.46608 -11.30866 -10.92325 -10.72129 -10.52719 -10.50430 -10.28191 -9.97631 -9.71987 -9.67807 -9.56613 -9.34064 -9.32021 -8.54063 -8.45946 -8.37944 -6.63866 -5.79604 -3.22242 1.68663 2.53292 2.67436 2.69730 3.28676 3.37492 3.43166 3.44831 4.21693 4.37632 4.46539 4.49380 4.61272 4.76107 4.92268 4.99131 5.03791 5.10162 5.17059 5.18430 5.21075 5.27008 5.38834 5.47870 5.50665 5.53225 5.55066 5.58439 5.64833 5.79807 5.90574 5.94676 5.95923 6.01062 6.07491 6.12353 6.17058 6.29523 6.46045 6.54668 6.58236 6.63131 6.68967 6.73561 6.84615 7.00858 7.12476 7.33879 7.57844 7.61488 7.64390 7.79181 8.32976 8.46200 9.21662 9.85319 10.42138 11.28201 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017435 B = 0.002348 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.548739 B =11923.463611 C =12627.551454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.114 3.886 3 N -0.303 5.303 4 N -0.479 5.479 5 H 0.436 0.564 6 C 0.093 3.907 7 C -0.096 4.096 8 C -0.213 4.213 9 C -0.031 4.031 10 H 0.100 0.900 11 C -0.144 4.144 12 C 0.519 3.481 13 O -0.531 6.531 14 N -0.696 5.696 15 C 0.071 3.929 16 H 0.130 0.870 17 C -0.183 4.183 18 C -0.099 4.099 19 C -0.103 4.103 20 C 0.174 3.826 21 N -0.589 5.589 22 C -0.253 4.253 23 H 0.064 0.936 24 C 0.002 3.998 25 N -0.902 5.902 26 Si 0.901 3.099 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.283 1.283 30 C 0.149 3.851 31 C -0.097 4.097 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.401 0.599 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.060 0.940 45 H 0.044 0.956 46 H 0.018 0.982 47 H 0.089 0.911 48 H 0.254 0.746 49 H 0.019 0.981 50 H 0.054 0.946 51 H 0.052 0.948 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.681 18.587 10.319 22.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.052 4.052 3 N -0.126 5.126 4 N -0.187 5.187 5 H 0.279 0.721 6 C -0.036 4.036 7 C -0.155 4.155 8 C -0.225 4.225 9 C -0.053 4.053 10 H 0.118 0.882 11 C -0.201 4.201 12 C 0.305 3.695 13 O -0.407 6.407 14 N -0.346 5.346 15 C -0.034 4.034 16 H 0.147 0.853 17 C -0.221 4.221 18 C -0.100 4.100 19 C -0.143 4.143 20 C 0.047 3.953 21 N -0.312 5.312 22 C -0.382 4.382 23 H 0.082 0.918 24 C -0.196 4.196 25 N -0.546 5.546 26 Si 0.731 3.269 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.209 1.209 30 C 0.023 3.977 31 C -0.137 4.137 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.236 0.764 42 H 0.110 0.890 43 H 0.114 0.886 44 H 0.079 0.921 45 H 0.062 0.938 46 H 0.036 0.964 47 H 0.107 0.893 48 H 0.064 0.936 49 H 0.037 0.963 50 H 0.073 0.927 51 H 0.071 0.929 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.560 20.342 9.844 23.272 hybrid contribution 1.143 -1.587 0.019 1.956 sum 6.703 18.756 9.863 22.226 Atomic orbital electron populations 1.20331 0.86973 1.04261 1.02074 1.22029 0.96795 0.89754 0.96671 1.77287 0.86315 1.22302 1.26679 1.46058 1.07379 1.04595 1.60664 0.72052 1.20795 0.96661 0.85155 1.00964 1.20510 0.92841 0.98395 1.03723 1.19028 0.91192 0.94533 1.17712 1.19525 0.98615 0.93452 0.93730 0.88181 1.21836 1.00193 1.02089 0.96007 1.20536 0.79695 0.82034 0.87262 1.90686 1.59663 1.43848 1.46550 1.45437 1.51975 1.12433 1.24717 1.21840 0.95129 0.96391 0.90080 0.85270 1.23517 0.92474 1.04033 1.02116 1.21941 0.99519 0.92029 0.96514 1.21797 0.99203 0.97252 0.96029 1.20745 0.97994 0.92074 0.84441 1.43961 1.59429 1.25415 1.02352 1.19156 1.30958 0.89449 0.98662 0.91849 1.25039 0.99290 0.96664 0.98625 1.70023 1.39662 1.24462 1.20501 0.86395 0.81675 0.80776 0.78088 1.21065 1.21664 1.20885 1.20857 0.93579 0.87770 0.95535 1.21677 1.01117 0.99230 0.91669 0.91036 0.91123 0.89551 0.89912 0.90989 0.89432 0.91618 0.91793 0.91442 0.76385 0.88960 0.88614 0.92140 0.93787 0.96436 0.89265 0.93615 0.96269 0.92729 0.92926 0.91923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.87 8.57 36.01 0.31 -0.56 16 2 C 0.11 1.46 6.53 -82.41 -0.54 0.92 16 3 N -0.30 -3.98 12.70 33.67 0.43 -3.55 16 4 N -0.48 -4.82 7.36 33.47 0.25 -4.57 16 5 H 0.44 2.91 8.96 -182.61 -1.64 1.27 16 6 C 0.09 0.91 7.21 -82.27 -0.59 0.31 16 7 C -0.10 -0.58 10.07 36.01 0.36 -0.22 16 8 C -0.21 -2.42 4.36 -105.05 -0.46 -2.88 16 9 C -0.03 -0.30 2.89 -92.92 -0.27 -0.57 16 10 H 0.10 0.81 6.79 -51.93 -0.35 0.46 16 11 C -0.14 -1.13 8.95 37.16 0.33 -0.80 16 12 C 0.52 6.62 6.19 -10.99 -0.07 6.56 16 13 O -0.53 -8.67 13.41 5.55 0.07 -8.60 16 14 N -0.70 -8.50 5.24 -53.88 -0.28 -8.78 16 15 C 0.07 1.01 6.14 -68.01 -0.42 0.59 16 16 H 0.13 1.98 7.40 -51.93 -0.38 1.60 16 17 C -0.18 -2.56 9.86 -26.80 -0.26 -2.83 16 18 C -0.10 -1.58 1.94 -154.49 -0.30 -1.88 16 19 C -0.10 -1.82 5.37 -26.45 -0.14 -1.96 16 20 C 0.17 3.94 5.40 -3.68 -0.02 3.92 16 21 N -0.59 -14.36 2.94 -172.27 -0.51 -14.86 16 22 C -0.25 -6.80 9.54 -15.06 -0.14 -6.94 16 23 H 0.06 1.69 7.89 -52.49 -0.41 1.27 16 24 C 0.00 0.06 4.89 -17.43 -0.09 -0.02 16 25 N -0.90 -25.57 11.23 55.49 0.62 -24.95 16 26 Si 0.90 21.29 29.59 -169.99 -5.03 16.26 16 27 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 28 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 29 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 30 C 0.15 3.07 6.51 -3.68 -0.02 3.04 16 31 C -0.10 -1.67 5.83 -26.46 -0.15 -1.83 16 32 H 0.07 0.64 7.91 -51.93 -0.41 0.23 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.09 1.05 5.29 -51.93 -0.27 0.77 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.09 0.45 7.14 -51.93 -0.37 0.08 16 38 H 0.06 0.55 6.17 -51.93 -0.32 0.23 16 39 H 0.06 0.43 7.56 -51.93 -0.39 0.04 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.40 4.23 6.54 -40.82 -0.27 3.97 16 42 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.04 0.65 6.75 -51.93 -0.35 0.30 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.09 2.28 5.93 -51.93 -0.31 1.97 16 48 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 49 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.05 1.11 7.92 -51.93 -0.41 0.70 16 51 H 0.05 0.79 8.10 -51.93 -0.42 0.37 16 52 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 404.14 15.07 6.09 6.09 Total: -1.00 -33.31 404.14 -10.51 -43.81 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -9.68 Total: 4.29 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -2.47 Total: -5.15 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: 0.51 Total: -56.72 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.07 Total: -8.60 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.31 -10.51 -43.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016879531.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.307 kcal (2) G-P(sol) polarization free energy of solvation -33.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds