Wall clock time and date at job start Wed Apr 1 2020 03:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30835 * 125.89266 * 2 1 4 4 N 1.40091 * 108.20438 * 180.02562 * 3 2 1 5 5 H 0.96998 * 126.03935 * 179.97438 * 4 3 2 6 6 C 1.34946 * 107.92110 * 0.02562 * 4 3 2 7 7 C 1.50699 * 126.12207 * 180.02562 * 6 4 3 8 8 C 1.35307 * 107.74977 * 359.97438 * 6 4 3 9 9 C 1.50705 * 126.04206 * 180.26642 * 8 6 4 10 10 H 1.08997 * 109.46689 * 359.71242 * 9 8 6 11 11 C 1.52996 * 109.47053 * 119.71724 * 9 8 6 12 12 C 1.50703 * 109.47188 * 239.71980 * 9 8 6 13 13 O 1.21285 * 119.99962 * 359.97438 * 12 9 8 14 14 N 1.34773 * 120.00053 * 180.02562 * 12 9 8 15 15 C 1.46497 * 120.00007 * 179.97438 * 14 12 9 16 16 H 1.08998 * 115.55603 * 9.31250 * 15 14 12 17 17 C 1.53029 * 117.50311 * 223.58219 * 15 14 12 18 18 C 1.52818 * 117.50340 * 154.99655 * 15 14 12 19 19 C 1.53188 * 117.71279 * 359.86180 * 18 15 14 20 20 C 1.53349 * 108.76967 * 158.88847 * 19 18 15 21 21 N 1.46841 * 108.81655 * 51.30459 * 20 19 18 22 22 C 1.36933 * 120.38147 * 123.12056 * 21 20 19 23 23 H 1.08001 * 120.00124 * 208.88601 * 22 21 20 24 24 C 1.38817 * 120.00022 * 28.88916 * 22 21 20 25 25 N 1.31619 * 120.00005 * 17.84606 * 24 22 21 26 26 Si 1.86804 * 119.99826 * 197.85103 * 24 22 21 27 27 H 1.48489 * 109.47223 * 59.99954 * 26 24 22 28 28 H 1.48508 * 109.46756 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.46880 * 299.99467 * 26 24 22 30 30 C 1.46844 * 119.23286 * 303.10008 * 21 20 19 31 31 C 1.53182 * 117.71825 * 215.09915 * 18 15 14 32 32 H 1.09003 * 109.47247 * 269.96986 * 1 2 3 33 33 H 1.08997 * 109.47856 * 29.97584 * 1 2 3 34 34 H 1.09005 * 109.46724 * 149.97910 * 1 2 3 35 35 H 1.08999 * 109.47332 * 269.97272 * 7 6 4 36 36 H 1.08997 * 109.47507 * 29.97315 * 7 6 4 37 37 H 1.09005 * 109.46953 * 149.96882 * 7 6 4 38 38 H 1.08995 * 109.47274 * 60.00353 * 11 9 8 39 39 H 1.09006 * 109.46922 * 180.02562 * 11 9 8 40 40 H 1.09000 * 109.47300 * 299.99631 * 11 9 8 41 41 H 0.97001 * 119.99786 * 359.97438 * 14 12 9 42 42 H 1.09006 * 117.50358 * 359.97438 * 17 15 14 43 43 H 1.09002 * 117.50678 * 145.04463 * 17 15 14 44 44 H 1.09003 * 109.58403 * 278.67039 * 19 18 15 45 45 H 1.09001 * 109.58979 * 39.09768 * 19 18 15 46 46 H 1.08998 * 109.57635 * 291.50150 * 20 19 18 47 47 H 1.09000 * 109.57636 * 171.10534 * 20 19 18 48 48 H 0.96994 * 119.99848 * 179.97438 * 25 24 22 49 49 H 1.09002 * 109.58068 * 297.10392 * 30 21 20 50 50 H 1.09000 * 109.57628 * 176.70560 * 30 21 20 51 51 H 1.09005 * 109.58593 * 320.90333 * 31 18 15 52 52 H 1.08999 * 109.58804 * 81.32694 * 31 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2740 1.0599 0.0000 4 7 3.6087 0.6343 -0.0006 5 1 4.3907 1.2081 -0.0011 6 6 3.6142 -0.7152 -0.0015 7 6 4.8351 -1.5986 -0.0019 8 6 2.3272 -1.1329 -0.0009 9 6 1.8600 -2.5657 0.0041 10 1 2.7245 -3.2297 0.0020 11 6 1.0212 -2.8242 1.2571 12 6 1.0241 -2.8258 -1.2226 13 8 0.8267 -1.9353 -2.0220 14 7 0.4950 -4.0477 -1.4309 15 6 -0.3180 -4.3004 -2.6230 16 1 -0.3194 -3.5052 -3.3684 17 6 -1.6093 -5.1012 -2.4410 18 6 -0.4025 -5.7405 -3.1274 19 6 0.3703 -6.8129 -2.3533 20 6 -0.2421 -8.1839 -2.6648 21 7 -0.3315 -8.3426 -4.1219 22 6 0.2716 -9.4045 -4.7412 23 1 0.6176 -9.3103 -5.7599 24 6 0.4383 -10.6023 -4.0596 25 7 -0.2702 -10.8482 -2.9780 26 14 1.6685 -11.8651 -4.6774 27 1 3.0276 -11.2672 -4.6899 28 1 1.6567 -13.0480 -3.7796 29 1 1.2992 -12.2838 -6.0534 30 6 -1.0757 -7.3496 -4.9070 31 6 -0.4801 -5.9618 -4.6412 32 1 -0.3634 -0.0005 1.0277 33 1 -0.3635 0.8901 -0.5134 34 1 -0.3633 -0.8899 -0.5142 35 1 5.1294 -1.8113 -1.0296 36 1 5.6512 -1.0908 0.5121 37 1 4.6077 -2.5328 0.5118 38 1 0.1568 -2.1603 1.2591 39 1 0.6836 -3.8607 1.2610 40 1 1.6258 -2.6362 2.1444 41 1 0.6526 -4.7599 -0.7914 42 1 -1.8536 -5.4404 -1.4343 43 1 -2.4606 -4.8328 -3.0667 44 1 1.4164 -6.8019 -2.6594 45 1 0.2982 -6.6149 -1.2838 46 1 -1.2390 -8.2462 -2.2286 47 1 0.3900 -8.9690 -2.2499 48 1 -0.1540 -11.6853 -2.5020 49 1 -2.1243 -7.3602 -4.6098 50 1 -0.9923 -7.5858 -5.9679 51 1 -1.1165 -5.1990 -5.0898 52 1 0.5201 -5.9050 -5.0705 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016879531.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:10 Heat of formation + Delta-G solvation = 49.624378 kcal Electronic energy + Delta-G solvation = -31132.877981 eV Core-core repulsion = 27133.901737 eV Total energy + Delta-G solvation = -3998.976243 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.47106 -40.97943 -39.64997 -37.07857 -35.31856 -34.47557 -34.16397 -33.09311 -31.70340 -31.10260 -29.81341 -28.96049 -27.65081 -26.21279 -25.45502 -24.01403 -23.25525 -22.50404 -21.39848 -21.11853 -20.13342 -19.74125 -18.65375 -18.19968 -17.57454 -17.03261 -16.74819 -16.18894 -16.06464 -15.63825 -15.43264 -15.19677 -15.00236 -14.84179 -14.58689 -14.53478 -14.13232 -14.09188 -13.71904 -13.68619 -13.46790 -13.33376 -13.28280 -13.17250 -13.03997 -12.95639 -12.85166 -12.54053 -12.53362 -12.41323 -12.27699 -12.23143 -11.94573 -11.74815 -11.34172 -11.30364 -11.20862 -10.76360 -10.58591 -10.43272 -10.15446 -9.55343 -9.31966 -8.58248 -7.83486 -5.29194 0.92154 1.48928 1.50557 1.57515 1.66107 1.71849 2.00266 2.32152 2.54088 3.02372 3.31043 3.66803 3.69248 3.76850 3.78886 3.89906 3.93593 4.05895 4.18667 4.21184 4.26385 4.29036 4.43589 4.56810 4.57080 4.69858 4.73726 4.75322 4.75795 4.81762 4.90389 4.92396 4.95834 5.01891 5.03931 5.06603 5.13632 5.14866 5.18146 5.25815 5.26380 5.35921 5.37323 5.40993 5.57206 5.63592 5.69138 5.74945 5.83768 6.44312 6.47972 6.65945 6.77315 7.20067 7.36731 7.92275 8.43043 9.21205 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017435 B = 0.002348 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.548739 B =11923.463611 C =12627.551454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.096 3.904 3 N -0.340 5.340 4 N -0.475 5.475 5 H 0.448 0.552 6 C 0.099 3.901 7 C -0.095 4.095 8 C -0.237 4.237 9 C -0.023 4.023 10 H 0.122 0.878 11 C -0.141 4.141 12 C 0.519 3.481 13 O -0.569 6.569 14 N -0.689 5.689 15 C 0.090 3.910 16 H 0.121 0.879 17 C -0.170 4.170 18 C -0.118 4.118 19 C -0.086 4.086 20 C 0.179 3.821 21 N -0.608 5.608 22 C -0.264 4.264 23 H 0.061 0.939 24 C -0.047 4.047 25 N -0.931 5.931 26 Si 0.963 3.037 27 H -0.279 1.279 28 H -0.293 1.293 29 H -0.278 1.278 30 C 0.146 3.854 31 C -0.087 4.087 32 H 0.090 0.910 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.057 0.943 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.411 0.589 42 H 0.102 0.898 43 H 0.105 0.895 44 H 0.049 0.951 45 H 0.074 0.926 46 H -0.001 1.001 47 H 0.056 0.944 48 H 0.250 0.750 49 H 0.017 0.983 50 H 0.049 0.951 51 H 0.077 0.923 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.908 19.208 11.319 23.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.070 4.070 3 N -0.164 5.164 4 N -0.184 5.184 5 H 0.294 0.706 6 C -0.031 4.031 7 C -0.154 4.154 8 C -0.249 4.249 9 C -0.045 4.045 10 H 0.140 0.860 11 C -0.198 4.198 12 C 0.307 3.693 13 O -0.448 6.448 14 N -0.339 5.339 15 C -0.016 4.016 16 H 0.138 0.862 17 C -0.209 4.209 18 C -0.120 4.120 19 C -0.126 4.126 20 C 0.054 3.946 21 N -0.332 5.332 22 C -0.395 4.395 23 H 0.078 0.922 24 C -0.243 4.243 25 N -0.577 5.577 26 Si 0.791 3.209 27 H -0.205 1.205 28 H -0.219 1.219 29 H -0.204 1.204 30 C 0.020 3.980 31 C -0.126 4.126 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.113 0.887 37 H 0.120 0.880 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.248 0.752 42 H 0.120 0.880 43 H 0.123 0.877 44 H 0.068 0.932 45 H 0.093 0.907 46 H 0.017 0.983 47 H 0.074 0.926 48 H 0.059 0.941 49 H 0.035 0.965 50 H 0.068 0.932 51 H 0.096 0.904 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.795 20.986 10.849 24.583 hybrid contribution 0.750 -1.731 -0.331 1.915 sum 7.545 19.255 10.518 23.202 Atomic orbital electron populations 1.20302 0.86664 1.03296 1.02980 1.22325 0.97418 0.90409 0.96840 1.77199 0.87733 1.23260 1.28252 1.46114 1.06998 1.05220 1.60055 0.70600 1.21377 0.97560 0.85200 0.98916 1.20663 0.91873 0.98462 1.04363 1.19297 0.91712 0.94945 1.18902 1.19555 0.99029 0.93109 0.92838 0.85981 1.21846 0.99840 1.02737 0.95425 1.21092 0.79203 0.81366 0.87630 1.90677 1.61019 1.44978 1.48085 1.45384 1.51547 1.12815 1.24201 1.21592 0.95233 0.94390 0.90401 0.86165 1.23592 0.92282 1.02553 1.02440 1.21800 1.01629 0.92920 0.95642 1.21521 0.98212 0.94679 0.98144 1.20570 0.96555 0.94030 0.83491 1.44235 1.60068 1.25618 1.03230 1.19442 1.30863 0.90383 0.98768 0.92175 1.25734 1.00965 0.98476 0.99109 1.70165 1.41080 1.24766 1.21681 0.85416 0.79631 0.78356 0.77489 1.20479 1.21890 1.20437 1.20970 0.93299 0.88884 0.94808 1.21502 1.00677 0.97444 0.92954 0.89178 0.91845 0.90598 0.89692 0.88739 0.88006 0.92376 0.90418 0.90170 0.75177 0.87961 0.87700 0.93177 0.90749 0.98321 0.92585 0.94059 0.96530 0.93219 0.90417 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.63 8.57 71.24 0.61 -1.02 16 2 C 0.10 2.39 6.53 43.10 0.28 2.67 16 3 N -0.34 -8.83 12.70 -47.39 -0.60 -9.43 16 4 N -0.47 -8.96 7.36 -48.01 -0.35 -9.31 16 5 H 0.45 5.39 8.96 -213.33 -1.91 3.48 16 6 C 0.10 1.73 7.21 41.40 0.30 2.03 16 7 C -0.10 -0.86 10.07 71.24 0.72 -0.14 16 8 C -0.24 -5.00 4.36 -20.14 -0.09 -5.09 16 9 C -0.02 -0.40 2.89 -12.28 -0.04 -0.43 16 10 H 0.12 1.54 6.79 -2.39 -0.02 1.52 16 11 C -0.14 -1.83 8.95 71.98 0.64 -1.18 16 12 C 0.52 12.28 6.19 87.66 0.54 12.82 16 13 O -0.57 -18.06 13.41 -3.05 -0.04 -18.10 16 14 N -0.69 -15.12 5.24 -442.78 -2.32 -17.44 16 15 C 0.09 2.35 6.14 44.94 0.28 2.63 16 16 H 0.12 3.47 7.40 -2.39 -0.02 3.45 16 17 C -0.17 -4.35 9.86 30.55 0.30 -4.05 16 18 C -0.12 -3.58 1.94 -52.17 -0.10 -3.69 16 19 C -0.09 -2.94 5.37 30.77 0.17 -2.77 16 20 C 0.18 8.21 5.40 86.43 0.47 8.68 16 21 N -0.61 -29.99 2.94 -698.92 -2.05 -32.04 16 22 C -0.26 -14.42 9.54 84.04 0.80 -13.62 16 23 H 0.06 3.24 7.89 -2.91 -0.02 3.22 16 24 C -0.05 -2.60 4.89 84.86 0.41 -2.18 16 25 N -0.93 -53.86 11.23 21.65 0.24 -53.62 16 26 Si 0.96 44.18 29.59 68.60 2.03 46.21 16 27 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 28 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 29 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 30 C 0.15 5.99 6.51 86.43 0.56 6.55 16 31 C -0.09 -2.87 5.83 30.77 0.18 -2.69 16 32 H 0.09 1.55 7.91 -2.39 -0.02 1.53 16 33 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.08 1.82 5.29 -2.38 -0.01 1.80 16 35 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.10 0.65 7.14 -2.38 -0.02 0.64 16 38 H 0.06 0.85 6.17 -2.39 -0.01 0.84 16 39 H 0.08 0.79 7.56 -2.38 -0.02 0.77 16 40 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.41 7.35 6.54 -92.71 -0.61 6.75 16 42 H 0.10 2.44 8.14 -2.38 -0.02 2.42 16 43 H 0.10 2.52 8.14 -2.39 -0.02 2.51 16 44 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.07 2.04 6.75 -2.39 -0.02 2.02 16 46 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 47 H 0.06 2.93 5.93 -2.39 -0.01 2.92 16 48 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 49 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.05 2.03 7.92 -2.39 -0.02 2.01 16 51 H 0.08 2.17 8.10 -2.38 -0.02 2.15 16 52 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -73.89 404.14 1.38 -72.52 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: -1.57 Total: 22.69 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: 6.04 Total: -1.47 kcal Atomic # 7 Polarization: -116.76 SS G_CDS: -5.08 Total: -121.84 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -0.04 Total: -18.10 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -73.89 1.38 -72.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016879531.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.142 kcal (2) G-P(sol) polarization free energy of solvation -73.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds